LOC100499175 (LOC106569154)


Basic Information

Item Value
gene id LOC100499175
gene name LOC106569154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69578994 ~ 69591039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613503.2
TTCAAAGAAATGTAGCGCATAGTGCTGCACGCATAAAGTGAATAGGCTCCTCCTAGTCAAGACACCGCCATAAAGATGTGACAATATTTAAGAATAGGTCATCCCATGCTCTCTCTTGAGAACAGTGTCGGTGAGATCGATTTCATTACTTTTCAGAGACGCTCACATGGTTAGAGAGATGAACTTCGAGGGGGACAGCGGCCTGTCAGTGAGCTGCGGCAACGGGAAACTTAGACAGTGGCTGATCGATCAGATTGACAGCAGCATCTATCCCGGACTGGTTTGGGAGAATGAAGAGAAAAGCATTTTCAGGATTCCGTGGAAACATGCGGGCAAACAGGATTACAATCGTGACGAGGATGCTGCACTCTTCAAGGCCTGGGCATTGTTCAAAGGGAAACATAGGGAAGGAGTGGACAAACCAGACCCCCCCACATGGAAGACCAGACTGCGATGTGCTCTGAACAAAAGCAATGACTTTGATGAGCTGGTGGAGCGAAGCCAACTGGACATATCCGATCCTTTCAAAGTCTACAGAATCATACCGGAGGGAGCTAAGAGAGGGATCAAGATGGCAGAGACAACGTCCCACATGAGCTCAGTCAACAGCTACCCTATGCActctctatacccatctctacAGAGCCAGGTGTCTGGCGGATTCATGATTCCtcaggagaggaaggagtggaggGATTACAGCCACGCACTGGACCAGCCTCAGCTTCACCAGCCACCCCACACAGAGCTGCAGTACAGCCAGTGCCACTACCCACAGCCACTCAGCCGACCCTGGCACACCGGGCCACACACAGATAACGaCTTCCGACTGCACGTATCCCTGTTCTACCGTGAGTCTCTGGTCAAGAAGGTAACCACCTCGAGTCCTGAAGGCTGCCGGAtcacctcttcttcctcctcatcttcctctccgTCCTCCCTCTGCCACGAGGACAGGCTGTATAGTGGTGCAGAGACGGTGCAATTCCCCTCCCCTTACCCCCAGTCTcagaggagaggggcagagaagCTAACCAACGTCCTGGAGAGGGGCGTGCTCCTGTGGATGACGTTAGATGGGCTCTATGCCAAGCGGCTGTGCCAGAGCCGAGTGTACTGGGAAGGCCCACTGGCACCCTACACGGACAAACCCAATAAATTGGAGAAAGAACAGACCTGCAAGCTGTTTGACACCCAGCAGTTCCTCACTGAGCTGCAGGGGTATGCCCACCATGGCCGTCCCATGCCcaggcaccaggtggtgctgtgTTTCGGAGACGAGTACCCGGACCCCCAGCGCCAGGCCAAGATGATCACAgcacagGTGGAGCCCATGTTTGCCAGGGGCATGATATACTTCAGCCAGCAGAGCAGCAGTCACTGCCTGAGGGACTATGAGCTACAGGGACACACAGAGATCTCCCTTCCGGCTCCAGGAGTCTACCAGAGGACCCTTCAACAGAACTCCCCTCTAGCTCCAGGAGACTACCAGAGGACCCTTCAACAGAGCTCCCCTTTAGCTCCAGGAGACTACCAGAGGACCCTGCAACAAATGCAGGAGTAACACACAAACAGGCCCCAGGAGCCATGGACATGAATGTAGATTGACCAATGAGCTTTACATCGCTTCTCCTGAGTAGTGTACAGTATACTGAGGTCTTGGACTAAAATACCTTACTGTAATTTCAACGTAAGACTGGACTGTGCCTCCATCGTGAGTGTCAGCAGTTTGAGCCAATGATCAATGTTAAAAATGGGGGCGCTTAAAGAATCTACCCTAGTTTGTACAGCCTTACAATTATTTTTGTAATCAaccatttttttgttgttctaTTAAATGATATGAAAAAGTGAATACCTATCACAAGAGGTGGCGTGTAGGCCTATCACGAGGTGATGTGTGTTACTCGTATTCCTGTGACATCTGTGGGTGCTGATGGGAAAGCTCCTGACCTGTGATAGTGGTGTGGGAGGGAGAACCCCACTACTTagcctctctcgttctcctctctctcattttctttcAACGAGAGGGATCGGAtgcatgtgtatttgtgtgcatGTGACATGGTGACAGTGTATAGGATGTGGTTTGGGGTAGAGGGTTTAGGGTGGGTGATGGGGGACCAATGTGAAGCAGAGAGGGACTGTCAGAAGCAGGAAGCACAAGTCACAGGTGCACAGGAAGAAGAGTAGCCCTTATGAGAAATTAAGACTTGAGAAGGAAGAAGAAGCCAAATGTATACGAATGAAGAATACAAATGGATCATTGATATATTGAAGTGTCTCACACAGAGACAATTTCTGTGTAGTATATTTTCACCCAATTATCAAACAATCTATGAAAGGGGTTCACTCCACTTAAGGCCAGGCACTGAATACAAATCCCTTGACATATTTTGATTATTTATGAACAACAATAGGTAACTTTGATGCAACCTAACTGAATAACGATTATTGTATTCTTCTATTTTCTTGATTATCCGGCTCCATAATCTTCCAATCATATATTTCTATTGTCTACTACTTCACCATCTCACAACTGATTGAAAATAGGCAACCctggtgtacagtgcattcggaaagtagtcagaccccttttctttttccacattttgtaacgttacagccttattctgaaatgttttcaattattatttatttcttatgaatctacacacaatacaaaacagaccctttgctatgacacttgaAATTGGCGAATTGTCTacagtcccacagttgatagtgcatgtcagagtaaaaaccaagccatgaggtcgaaggaattgtcctcaGAGCTCagagaggattgtgtcgaggcacaga
>XM_021613502.2
TCAAAGAAATGTAGCGCATAGTGCTGCACGCATAAAGTGAATAGGCTCCTCCTAGTCAAGACACCGCCATAAAGATGTGACAATATTTAAGAATAGGTCATCCCATGCTCTCTCTTGAGAACAGTGTCGGTGAGATCGATTTCATTACTTTTCAGAGACGCTCACATGGTTAGAGAGATGAACTTCGAGGGGGACAGCGGCCTGTCAGTGAGCTGCGGCAACGGGAAACTTAGACAGTGGCTGATCGATCAGATTGACAGCAGCATCTATCCCGGACTGGTTTGGGAGAATGAAGAGAAAAGCATTTTCAGGATTCCGTGGAAACATGCGGGCAAACAGGATTACAATCGTGACGAGGATGCTGCACTCTTCAAGGCCTGGGCATTGTTCAAAGGGAAACATAGGGAAGGAGTGGACAAACCAGACCCCCCCACATGGAAGACCAGACTGCGATGTGCTCTGAACAAAAGCAATGACTTTGATGAGCTGGTGGAGCGAAGCCAACTGGACATATCCGATCCTTTCAAAGTCTACAGAATCATACCGGAGGGAGCTAAGAGAGGGATCAAGATGGCAGAGACAACGTCCCACATGAGCTCAGTCAACAGCTACCCTATGCActctctatacccatctctacAGAGCCAGGTGTCTGGCGGATTCATGATTCCtcaggagaggaaggagtggaggGATTACAGCCACGCACTGGACCAGCCTCAGCTTCACCAGCCACCCCACACAGAGCTGCAGTACAGCCAGTGCCACTACCCACAGCCACTCAGCCGACCCTGGCACACCGGGCCACACACAGATAACGGTTATCAGTTTACTGGCTCCTTCTGTTCCTACTCTTCCTCAGAGTCTCACCCCACAGCATTTAAAATGGACCACAACATGTCTACCCTTTCTGaCTTCCGACTGCACGTATCCCTGTTCTACCGTGAGTCTCTGGTCAAGAAGGTAACCACCTCGAGTCCTGAAGGCTGCCGGAtcacctcttcttcctcctcatcttcctctccgTCCTCCCTCTGCCACGAGGACAGGCTGTATAGTGGTGCAGAGACGGTGCAATTCCCCTCCCCTTACCCCCAGTCTcagaggagaggggcagagaagCTAACCAACGTCCTGGAGAGGGGCGTGCTCCTGTGGATGACGTTAGATGGGCTCTATGCCAAGCGGCTGTGCCAGAGCCGAGTGTACTGGGAAGGCCCACTGGCACCCTACACGGACAAACCCAATAAATTGGAGAAAGAACAGACCTGCAAGCTGTTTGACACCCAGCAGTTCCTCACTGAGCTGCAGGGGTATGCCCACCATGGCCGTCCCATGCCcaggcaccaggtggtgctgtgTTTCGGAGACGAGTACCCGGACCCCCAGCGCCAGGCCAAGATGATCACAgcacagGTGGAGCCCATGTTTGCCAGGGGCATGATATACTTCAGCCAGCAGAGCAGCAGTCACTGCCTGAGGGACTATGAGCTACAGGGACACACAGAGATCTCCCTTCCGGCTCCAGGAGTCTACCAGAGGACCCTTCAACAGAACTCCCCTCTAGCTCCAGGAGACTACCAGAGGACCCTTCAACAGAGCTCCCCTTTAGCTCCAGGAGACTACCAGAGGACCCTGCAACAAATGCAGGAGTAACACACAAACAGGCCCCAGGAGCCATGGACATGAATGTAGATTGACCAATGAGCTTTACATCGCTTCTCCTGAGTAGTGTACAGTATACTGAGGTCTTGGACTAAAATACCTTACTGTAATTTCAACGTAAGACTGGACTGTGCCTCCATCGTGAGTGTCAGCAGTTTGAGCCAATGATCAATGTTAAAAATGGGGGCGCTTAAAGAATCTACCCTAGTTTGTACAGCCTTACAATTATTTTTGTAATCAaccatttttttgttgttctaTTAAATGATATGAAAAAGTGAATACCTATCACAAGAGGTGGCGTGTAGGCCTATCACGAGGTGATGTGTGTTACTCGTATTCCTGTGACATCTGTGGGTGCTGATGGGAAAGCTCCTGACCTGTGATAGTGGTGTGGGAGGGAGAACCCCACTACTTagcctctctcgttctcctctctctcattttctttcAACGAGAGGGATCGGAtgcatgtgtatttgtgtgcatGTGACATGGTGACAGTGTATAGGATGTGGTTTGGGGTAGAGGGTTTAGGGTGGGTGATGGGGGACCAATGTGAAGCAGAGAGGGACTGTCAGAAGCAGGAAGCACAAGTCACAGGTGCACAGGAAGAAGAGTAGCCCTTATGAGAAATTAAGACTTGAGAAGGAAGAAGAAGCCAAATGTATACGAATGAAGAATACAAATGGATCATTGATATATTGAAGTGTCTCACACAGAGACAATTTCTGTGTAGTATATTTTCACCCAATTATCAAACAATCTATGAAAGGGGTTCACTCCACTTAAGGCCAGGCACTGAATACAAATCCCTTGACATATTTTGATTATTTATGAACAACAATAGGTAACTTTGATGCAACCTAACTGAATAACGATTATTGTATTCTTCTATTTTCTTGATTATCCGGCTCCATAATCTTCCAATCATATATTTCTATTGTCTACTACTTCACCATCTCACAACTGATTGAAAATAGGCAACCctggtgtacagtgcattcggaaagtagtcagaccccttttctttttccacattttgtaacgttacagccttattctgaaatgttttcaattattatttatttcttatgaatctacacacaatacaaaacagaccctttgctatgacacttgaAATTGGCGAATTGTCTacagtcccacagttgatagtgcatgtcagagtaaaaaccaagccatgaggtcgaaggaattgtcctcaGAGCTCagagaggattgtgtcgaggcacaga

Function

NR:

description
interferon regulatory factor 4 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09445 IRF4; interferon regulatory factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613503.2 False 2829 mRNA 0.48 8 69578994 69591039
XM_021613502.2 True 2921 mRNA 0.48 9 69578995 69591039

Neighbor

gene id symbol gene type direction distance location
dusp22b LOC106569155 coding upstream 2178 69562986 ~ 69576816 (+)
opn7a LOC106569157 coding upstream 58624 69507655 ~ 69520370 (+)
LOC110530434 LOC106569160 coding upstream 144428 69355850 ~ 69434566 (+)
LOC110530432 LOC106569162 coding upstream 224301 69263522 ~ 69354693 (+)
LOC110530431 igfbp-3b1 coding upstream 430318 69135571 ~ 69148676 (+)
LOC110530440 foxq1 coding downstream 101250 69692289 ~ 69693962 (+)
foxf2a foxf2 coding downstream 108594 69699633 ~ 69703318 (+)
LOC110530442 foxc1 coding downstream 134288 69725327 ~ 69727474 (+)
wrnip1 wrnip1 coding downstream 512126 70103165 ~ 70127450 (+)
dhx30 dhx30 coding downstream 544416 70135455 ~ 70148930 (+)
G740840 NA non-coding upstream 24963 69553785 ~ 69554031 (+)
G740839 ripk1 non-coding upstream 25323 69551452 ~ 69553671 (+)
G740790 NA non-coding upstream 73032 69505749 ~ 69505962 (+)
G740789 NA non-coding upstream 73451 69505257 ~ 69505543 (+)
G740783 NA non-coding upstream 76664 69502115 ~ 69502330 (+)
G741094 NA non-coding downstream 148084 69739123 ~ 69739334 (+)
G741104 NA non-coding downstream 154051 69745090 ~ 69745594 (+)
G741109 NA non-coding downstream 173044 69764083 ~ 69764429 (+)
G741118 NA non-coding downstream 183948 69774987 ~ 69775199 (+)
G741119 NA non-coding downstream 184243 69775282 ~ 69775497 (+)
G740827 ripk1 other upstream 40718 69536400 ~ 69538276 (+)
G739708 NA other upstream 573878 69004337 ~ 69005116 (+)
G739670 NA other upstream 672029 68903365 ~ 68906965 (+)
G739648 NA other upstream 720241 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1656372 67904516 ~ 67924427 (+)
G742095 NA other downstream 1035182 70626221 ~ 70626744 (+)
G742860 NA other downstream 2104563 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2951687 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 3043845 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 3269369 72779485 ~ 72872336 (+)

Expression


Co-expression Network