LOC110530440 (foxq1)


Basic Information

Item Value
gene id LOC110530440
gene name foxq1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69692289 ~ 69693962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613504.2
CTATAAACAGGTCACCAGACGAGCTAGTGAACCCAAAGGTATGAGGACGGTGACTTCATCAGGTACTTCTAGGATATTTTGACAGAAAGCGGTCTACGTTTTGACACATTTACGCACAAGACAAGACTTCATCTGAGGACGTGCCTGTTTTTACTTGAGATTCGGATacaatttggatagaaaactagCAGTAGGCtataggataaataataatagaCAACATGAAACTTGAAGTATTCTGTGGAAACCACCACAACGAGGTGAAATCTTTGCAGGAGCTGTGCAGCGATGCCGAGGGCAGCGTCCGCTCGCCTCTCTCCGGTGAGGAAGAGTTGGGTTCGGATGGGGACTGCGTGGCGCACAGCCCGCCACCTGTCACACCCGGCGTAGACGGCATAGGCATTGGCAAACCGTACATACGGAGACCAAAACCTCCGTACTCTTACATCGCACTGATTGCCATGGCTATCCGTGACTCAACATCTGGTCGTCTGACTCTGGCAGAGATCAATGACTATCTGATGAAAAAGTTTCCATTTTTCCGGGGCAGCTACACTGGTTGGAGAAATTCGGTGCGCCACAACTTGTCACTTAACGACTGTTTTCTAAAGGTCCTCCGGGACCCGTCCAGACCCTGGGGAAAAGACAACTACTGGATGCTGAATCCTCACAGCGAGTACACCTTCGCTGACGGAGTGTTCCGACGCAGGAGAAAGCGCATCAATAAAAAGACAGGCAAAGAGCAAAACGTCTCCGACCATGCTGCCGACGAGAACGCGCAAGTCACCATCACATCCACACCCCCTACCACTAAAACCGGACCCAGCAGTGCCAAGTTCTCCAGTTCCTTCGCTATAGACAGTATCCTCAGCAAACCGTTCAAGAGACAGGAGTGGGCAGAGGATTCTCCCACCGTTGCTGCATTACCGTGGCCCGGTTACACTCAGATGATGCCACACATTATGAGAGGATCACCTGTCGCCTTGCCACATCACGCCCAGTCGATGTTCCATGTGGACTCATACGCTGCGCATGTGCTGAGGGCATACGGTGGTGGATTTTATTCAGAGAGGGTCAATCGCAAAGACAGTTACCCCGCAGAATATTATTCAAAGGCATAATCAGTTTACCAGAAAATCTCTACAGTACCATCGCCAACTACTTAAAAAAAACTGACGCTTACCACCTATTAGAAATAGAACGTTTGTTGTCGTAATGGACCCGAGGAGTGTAGCAAATGGAATGAAAACACTGGGTTTGCACTTGTGTACTTTAGTTATTATTGTGTATCAACTAAatgcattttattgcattaccTTAAATGTGGACAACCAGTCACCTACACAGGGCGTCGTATTATTTCATCAGGACATTTTAGTATGGACATTTAGTGTGGGAAGGAGTAGGCTTTATGTCATTCCTTTGAGGTTCTGTGGTAATTTCCCTTTAAATCAAGGGCATTTTTTTGTGCTATACAGTGTACAGTTTATGATGTATAGATTATAGGCTATTTATGTCGTTGGTTTGTTGAAAAGTTGTTACTTTCGACAATCAGTTGAGCTTCAGAACATGCTGTTTATAACATTTGGCATGTCATTTGTGCTAGTCGAGctgtttgtatgtttttattttaaaaaacacgATTAATATTTGTAATAAAGAGAAACTTTAACG

Function

symbol description
foxq1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of neuron apoptotic process. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
forkhead box protein Q1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613504.2 True 1674 mRNA 0.45 1 69692289 69693962

Neighbor

gene id symbol gene type direction distance location
LOC100499175 LOC106569154 coding upstream 101250 69578994 ~ 69591039 (+)
dusp22b LOC106569155 coding upstream 115473 69562986 ~ 69576816 (+)
opn7a LOC106569157 coding upstream 171919 69507655 ~ 69520370 (+)
LOC110530434 LOC106569160 coding upstream 257723 69355850 ~ 69434566 (+)
LOC110530432 LOC106569162 coding upstream 337596 69263522 ~ 69354693 (+)
foxf2a foxf2 coding downstream 5671 69699633 ~ 69703318 (+)
LOC110530442 foxc1 coding downstream 31365 69725327 ~ 69727474 (+)
wrnip1 wrnip1 coding downstream 409203 70103165 ~ 70127450 (+)
dhx30 dhx30 coding downstream 441493 70135455 ~ 70148930 (+)
LOC110530450 LOC106569144 coding downstream 478469 70172431 ~ 70186472 (+)
G740840 NA non-coding upstream 138258 69553785 ~ 69554031 (+)
G740839 ripk1 non-coding upstream 138618 69551452 ~ 69553671 (+)
G740790 NA non-coding upstream 186327 69505749 ~ 69505962 (+)
G740789 NA non-coding upstream 186746 69505257 ~ 69505543 (+)
G740783 NA non-coding upstream 189959 69502115 ~ 69502330 (+)
G741094 NA non-coding downstream 45161 69739123 ~ 69739334 (+)
G741104 NA non-coding downstream 51128 69745090 ~ 69745594 (+)
G741109 NA non-coding downstream 70121 69764083 ~ 69764429 (+)
G741118 NA non-coding downstream 81025 69774987 ~ 69775199 (+)
G741119 NA non-coding downstream 81320 69775282 ~ 69775497 (+)
G740827 ripk1 other upstream 154013 69536400 ~ 69538276 (+)
G739708 NA other upstream 687173 69004337 ~ 69005116 (+)
G739670 NA other upstream 785324 68903365 ~ 68906965 (+)
G739648 NA other upstream 833536 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1769667 67904516 ~ 67924427 (+)
G742095 NA other downstream 932259 70626221 ~ 70626744 (+)
G742860 NA other downstream 2001640 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2848764 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2940922 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 3166446 72779485 ~ 72872336 (+)

Expression


Co-expression Network