foxf2a (foxf2)


Basic Information

Item Value
gene id foxf2a
gene name foxf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69699633 ~ 69703318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613505.2
CCTTCATCGTTTGGCTGTTGCAGTGTTGACTGCAGTGTCTAAATAAGTTTGATAAATGGTGTAATTGCGTGTATTAGAGTTGTGAGGAGCGGGTGGGAGGAGGTCTCTGTTAGTCCTCTGCTCTGCGCTGTGTTATGTGTGGCTCTTGCTAGAATTATGTCTGGACGGAGGCCAGATCTGGCAGGGGTTGGATCTGGAGATCCTAGCGATTTCTTAGAGGGATTTAGCCGGGATCTATAGGgcagagagagattgaagaaTTGATAGGTGGTCGAGTTTTGTTTGGCCGAGTGGGATATGCGCAGGAAAGTCGAAGAGCTTTATGTTTCCCCTCATAAAGGGTTATTTCCAGAGATGGCCACAGTGAGACGGAGTTGGAGCAGCGGCCACACCGATATACAGCTGTTTTTCCTGATTATAACAGCAATACACGTGCAGTGAATCGCCACTGGACACTAACTTCTCCGATTATCCATTTGGAAACATATTTTCTAGAACGTCTGAAGTAGCTGACTGAAGAGGATTTGGTGTAGCCTACTTCTTAGACATTTCAGGGCAGTATTAGACATTTCAGGTCAGTGGAACAAAAGTCGAGCAAGGCATTGGTCATAGCCTACACGTGTCCTTCTGTGTCTCTAAAGTGGACGCAAACATGACGACTGAGAGCTCACAGCAACATCTGGTCCCGTCTCATCCTCTGAGATGCAGCCCAGCAGCCGGAGTGATGCACGCCACACCGATGAGCGCACAGCCAGTGGCGGAGAGCTCAACAAATGCATCAACCAAAGGGAAAAAGGGCAACTCTGGCTTGAGGCGACCTGAGAAACCGCCCTATTCATACATCGCCCTCATTGTGATGGCTATCCAAAGCTCCCCGACAAAGACGCTTACTCTGGCAGAAATATATCAGTTCCTTCAGGCCCGTTTCCCGTTCTTTATGGGGTCttaccagggctggaaaaactcAGTGAGGCACAACCTGTCTTTAAACGAGTGCTTCATCAAACTGCCTAAGGGCCTCGGCAGACCAGGGAAGGGCCACTACTGGACTATAGACCCGGGCAGCGAGTTTATGTTCGAGGAGGGATCCTTCCGTCGCAGACCTCGCGGATTCCGTAGGAAATGCCAAGCTCTGAAACCAATGTATCGAATGATGAATGGCATCGGTTTTGGAGCGTCGATACTTCCCCAAAACTTTGATTTCCAGAACCCCTCCGCGTCCTTGGCATGTCATGCCAACGGTTACAACCTGGACGTGATGGGGAACACGATGCCAGGGAGCTACGACGGGCTGGGTGGAGGGCATCATGTCCCTCATATGTCACCAAGCCCCGGGTCCACCTACATGGCGGCTTGTCAGGTGGCGTCTAATGGAGACTACTGCCCGGACAGCAGTAGTAGCCCTTTGCACACCTCCCCGGCTGCGATGGCAGTGGGCACTTTGGACTGTCATTCTCCCTACGCCAGTGCTTCTCCCTACGCCAGTGCCCCCTCACACTGGGCATCACCTGGTGTGTCTCCATATATCAAGCAGCAATCCCTGGCCTCAAACAGTCCCACATCCTCCGCCTTGCACTCCAGCATGTCCCCATACTCTCTGGAGCAAAGCTATATCCATCACAACGGAAGGGACTCATCTGACATTTCAGTGGGATTATCTCGATACTCAAGCCCTTCATCGCCAGTGTGTGACaggaaagatttttttttaaactttaacgGAATTTCTTCGTTTCACCCGGCGACTGCCAGTGGATCATACTATCACCAGCTACATCACCATCACCAGAGCGTCTGTCAGGATGTCAAGCCATGCATCATGTGAAATAAACGCAATAAGACCATTGCCATCTTGGATGAAGCTCACATGAACTACACTATATACAAGCTCTACGCTTATACCATTTGTCCCTTGCCAAGTCCGGTACAAATATCTAAGACGAATTAGGGGAATGTAGGCTATGTATACATAACGTATTTGTCTCTGAGAAGGTCTGTGTCACGACACCATTCCGGAGAATTTAAAAACGACTGAGTGCATgaagtaaaaattgaaaaaatgcATGTATTGCCATTGTCCAACACGTCAATCACGGCTCAGACAGCTCGTCCATGCCATGATCTATTCAGAAGTTATTGTATCATTCAATATTGTAGGTTAGTGTGTGAGTACCAGTTATCGACATGGATAAAATGTAATATCCAACCACATTAAATGTGTTTACTTAAAAATACATGCACATTCACCCCGGGTTATCTTTAGCTATTTGCACTTACATCTAGACCCCAgagttttcttttttttaaagatttcgCTGTAGGCTACAGCAAgccaataaatatatatatttgaaaactGTTTGGGTTAGTTTTTATTCAAAGGTAAATGTATACAGCAAGGGAATTATTTCCCAAGATTGCGTTTGAGACAATTTTACCACTTTATGACAATGAGGTGTTTTGGTATGTTGTTTTTGTTATTGCAAACCTTAATATAACTGTCGTTATTGTTATAGCATATTATTTTAATTC

Function

symbol description
foxf2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including genitalia development; regulation of cellular protein metabolic process; and roof of mouth development. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex.

NR:

description
forkhead box protein F2-like

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613505.2 True 2532 mRNA 0.47 2 69699633 69703318

Neighbor

gene id symbol gene type direction distance location
LOC110530440 foxq1 coding upstream 5671 69692289 ~ 69693962 (+)
LOC100499175 LOC106569154 coding upstream 108594 69578994 ~ 69591039 (+)
dusp22b LOC106569155 coding upstream 122817 69562986 ~ 69576816 (+)
opn7a LOC106569157 coding upstream 179263 69507655 ~ 69520370 (+)
LOC110530434 LOC106569160 coding upstream 265067 69355850 ~ 69434566 (+)
LOC110530442 foxc1 coding downstream 22009 69725327 ~ 69727474 (+)
wrnip1 wrnip1 coding downstream 399847 70103165 ~ 70127450 (+)
dhx30 dhx30 coding downstream 432137 70135455 ~ 70148930 (+)
LOC110530450 LOC106569144 coding downstream 469113 70172431 ~ 70186472 (+)
LOC110530454 LOC106569140 coding downstream 747689 70451007 ~ 70460534 (+)
G740840 NA non-coding upstream 145602 69553785 ~ 69554031 (+)
G740839 ripk1 non-coding upstream 145962 69551452 ~ 69553671 (+)
G740790 NA non-coding upstream 193671 69505749 ~ 69505962 (+)
G740789 NA non-coding upstream 194090 69505257 ~ 69505543 (+)
G740783 NA non-coding upstream 197303 69502115 ~ 69502330 (+)
G741094 NA non-coding downstream 35805 69739123 ~ 69739334 (+)
G741104 NA non-coding downstream 41772 69745090 ~ 69745594 (+)
G741109 NA non-coding downstream 60765 69764083 ~ 69764429 (+)
G741118 NA non-coding downstream 71669 69774987 ~ 69775199 (+)
G741119 NA non-coding downstream 71964 69775282 ~ 69775497 (+)
G740827 ripk1 other upstream 161357 69536400 ~ 69538276 (+)
G739708 NA other upstream 694517 69004337 ~ 69005116 (+)
G739670 NA other upstream 792668 68903365 ~ 68906965 (+)
G739648 NA other upstream 840880 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1777011 67904516 ~ 67924427 (+)
G742095 NA other downstream 922903 70626221 ~ 70626744 (+)
G742860 NA other downstream 1992284 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2839408 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2931566 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 3157090 72779485 ~ 72872336 (+)

Expression


Co-expression Network