LOC110530442 (foxc1)


Basic Information

Item Value
gene id LOC110530442
gene name foxc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69725327 ~ 69727474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613507.2
TTAACTCCGAAAAAGTATTCTGTAGTGACGGATGCCCAAAGTTCAGACGTTTTTCCATGTGCGCCTCAGCACACAGAGATGGAAACCGCTTATACCTATTAAGACACGGTACAGCGCGTTCCTGATATTATCATTTTTCAAGTGACAGGACAGCACCTCAGCTTTTCAGAAGGAAAAAGTGGAGCTCTCCCGCTGCATACATTGGGAAGTTCGTTTTACGCAGGAGCATAGTTGAGCTGTGGGTAGAAGAAGACATGCAGGCGCGCTACTCCGTCTCGAGCCCCAACTCTCTGGGCGTCGTGCCTTACATTAGTAGCGACCAAAGCTACTACCGGGCCGCTGCTGGTGGAGGATACACCGGGATGCCGGCCCCTATGAGTATGTACTCTCACGCGGCCCACGACCAGTACCCGGCCAGCATGGCGCGAGCCTATGGACCATATACCCCGCAGCCCCAGCCGAAAGATATGGTAAAACCGCCGTACAGTTACATTGCGCTTATTACTATGGCTATCCAGAACTCGCCTGACAAGAAGGTTACCCTGAATGGGATTTATCAGTTTATCATGGAGAGGTTCCCGTTCTACCGAGACAACAAGCAGGGCTGGCAGAACAGCATCAggcacaacctctctctcaacgagtgttttgtcaaagttccCCGTGATGACAAAAAGCCTGGCAAGGGGAGCTACTGGACCCTGGACCCGGACTCATACAACATGTTCGAGAACGGCAGCTTCTTGAGGAGGAGGCGACGGTTCAAGAAGAAAGACGCAATGAAAGACAAGGATGACCGGGGTGCTAAGGAGACACCGTCTAGACAGGGCCGGGACACGGAGCAGCCAATGCAGGGCTCCCAGCCTGTCAGGATTCAGGATATTAAGACCGAGAACGGGAACGCTACACCCCCACAGACCGCCTCGCCCTCCCTGAGCACAGTGCCCAAAGTCGAGAGCCCCGGcagcggcagcagcagcagcatgtcCAGTGGTGGCAGCCCCCACAGCATCCCGTCCAACAGGTCCATTGGCATGGAGAGCTccgagcagcagcagcagcaccaccacAGCCAGGCCCAGGCACAGGGCTTCAGTGTGGACAACATCATGACTTCCCTCCGGGGGTCCCCACAGGGTGCCACAGAGCTTGCCCCATCCCTCGTCGCCTCATCCAGGACAGGTATAACACCGTCTTTGTCCCTAAGTTATTCACCGAACCAGACGTCAGTCTATAGCTCACCCTGTAACCAAAACTCTATCTCCACTACCTCGAATGCGTCCTACCATTGTAATATGCAAGCAATGAGTTTATACGCTGGGGATAGATCTAGCCACCTAGTTCCTACTACCACCGTGGAGGAAACGTTGCCAGATTACTCCATCACTACAACCCCCTCCTCTCTGGCCCACGGCAATCTAAACTCTGCGCAAGAGGGCCACCATCCCCACCAAGGGCGTCTTCCCTCATGGTACCTCAACCAGGCCGGGGACCTGGGCCACCTCGGGGCGACCTACCCCACCCAGCAGCAGAACTTCCACTCCGTGCGCGAGATATTCGAATCTCAAAGAATTGGCTTGAATAATTCTCCAGTGAACGGGAATAACAGCTGTCAAATGTCCTTTCCTTCTAGCCAAGCCATCTACCGCACCCCGGGAGCTTTCGTATATGACTGCAGCAAGTTCTGACCAAAGTTTATTGTATTGATCTTTTTCATAAAAATAACTTGAGTCGTTTCCCCCACCACCTGCCCCAAAAGATGGACTAAAACGAACAGAAAAGGACAGAAAAAAAGACATGATCTTGGTTTGTAAAGAACAGTGTTACTGCAAATAACACGTAAGTCTCTTCTCGCTTTTGTGAAATGTTTAAAAGATATGCTAAAGATATGCCAGTCTTTCATGGACATACTATAACGTGTAAATTGCATATAGTAATTTATTTCTAAACTGTAGCCGGATATTATGGACCAAACACCAAAAAGTGTTTCTAAATTGAATTGCCTTAATTGTCCGAAGATGTTCCATTATAAAAAGCGGAACCTGTATATCGTCCTACTCTTTCAAAGTTTCTCCTTTTGTTGAAAAGTATTCTGAAGGAATTTCATTGTTTGTttaataaattgacattttattTGAGTTAAAGCTA

Function

symbol description
foxc1 Enables DNA binding activity, bending; DNA-binding transcription activator activity, RNA polymerase II-specific; and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cellular response to epidermal growth factor stimulus; odontogenesis of dentin-containing tooth; and positive regulation of cell differentiation. Acts upstream of or within eye development; heart development; and positive regulation of transcription, DNA-templated. Located in cytosol; heterochromatin; and nucleoplasm. Implicated in Axenfeld-Rieger syndrome; Axenfeld-Rieger syndrome type 3; anterior segment dysgenesis 3; and glaucoma. Biomarker of congestive heart failure and invasive ductal carcinoma.

NR:

description
forkhead box C1-A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613507.2 True 2148 mRNA 0.50 1 69725327 69727474

Neighbor

gene id symbol gene type direction distance location
foxf2a foxf2 coding upstream 22009 69699633 ~ 69703318 (+)
LOC110530440 foxq1 coding upstream 31365 69692289 ~ 69693962 (+)
LOC100499175 LOC106569154 coding upstream 134288 69578994 ~ 69591039 (+)
dusp22b LOC106569155 coding upstream 148511 69562986 ~ 69576816 (+)
opn7a LOC106569157 coding upstream 204957 69507655 ~ 69520370 (+)
wrnip1 wrnip1 coding downstream 375691 70103165 ~ 70127450 (+)
dhx30 dhx30 coding downstream 407981 70135455 ~ 70148930 (+)
LOC110530450 LOC106569144 coding downstream 444957 70172431 ~ 70186472 (+)
LOC110530454 LOC106569140 coding downstream 723533 70451007 ~ 70460534 (+)
LOC110530455 LOC106569138 coding downstream 736374 70463848 ~ 70493098 (+)
G740840 NA non-coding upstream 171296 69553785 ~ 69554031 (+)
G740839 ripk1 non-coding upstream 171656 69551452 ~ 69553671 (+)
G740790 NA non-coding upstream 219365 69505749 ~ 69505962 (+)
G740789 NA non-coding upstream 219784 69505257 ~ 69505543 (+)
G740783 NA non-coding upstream 222997 69502115 ~ 69502330 (+)
G741094 NA non-coding downstream 11649 69739123 ~ 69739334 (+)
G741104 NA non-coding downstream 17616 69745090 ~ 69745594 (+)
G741109 NA non-coding downstream 36609 69764083 ~ 69764429 (+)
G741118 NA non-coding downstream 47513 69774987 ~ 69775199 (+)
G741119 NA non-coding downstream 47808 69775282 ~ 69775497 (+)
G740827 ripk1 other upstream 187051 69536400 ~ 69538276 (+)
G739708 NA other upstream 720211 69004337 ~ 69005116 (+)
G739670 NA other upstream 818362 68903365 ~ 68906965 (+)
G739648 NA other upstream 866574 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1802705 67904516 ~ 67924427 (+)
G742095 NA other downstream 898747 70626221 ~ 70626744 (+)
G742860 NA other downstream 1968128 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2815252 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2907410 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 3132934 72779485 ~ 72872336 (+)

Expression


Co-expression Network