wrnip1 (wrnip1)


Basic Information

Item Value
gene id wrnip1
gene name wrnip1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70103165 ~ 70127450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613514.2
TGACCCCGTCCTAGGCAGACAGAAATGGTTCACATGCTGCAAGTGAACACAAATCTTAAGTGttctttttcattttttaaactgctataataaatgtaaaatattatatttttataAAGTGTCGGTGTTATGGTCACGTGGTGAGGTCAAGTTTAGCGGGAAAGAAAACATGGCGAGCGAAGTAGAAGGTAGCGTTGCGGAGCCAGTACAATGTCCCGTTTGTTTTAAGGATTTCGCGGCGTCAGAAATCAATGCCCATCTGGACAGATGTTTGTTAAACAATGACAGTTGTCCGACATCAACCAGTAAAGAAATGAACGGACCACCTCTCAAGAAACCTCGCATTTCTAGCGAAGCGTCTAGTCCAACAGTCAATACGACAGAGTCGTCAGAGGCGAGGAAAAGTACCACGCCGCCCTCTCCGATTTTCAGGATGTTTCAGACCAACATAAATAagggtccagttcaaagtgaacgaAATACATTTTTATCGAATAAACCGATTGCCAGCACTGCTGTCAGCAAAGGAACGAAACGTCATTCACCGGACGAGATGGGGACAGGTAAGGCGATGGGACAGTTTTGCATCGAGCCCCCTGCATCGAACACACTGATAAAGACCCCGCGTGATACAACACCTGTGCGCGCACTGCTGAATATCGATAAGCCACTGGCGGATAAACTGCGACCAACAACGCTAGAGGAATATTTCGGCCAAAACAAAGTAGTAGGAGAACACACCCTTCTCAGGTCGCTGTTGGATTCTCAGGAGATACCGTCATTGATCCTATGGGGACCACCTGGATGTGGGAAGACCACCCTGGCCCACATCATAGCCAGCGGCAATAAGAAGAGGGGCACGGCCCGCTTCGTTTCTCTCTCTGCCACCAGCACATCCACCAATGAGGTGCGAGAGGTCATTAAGCAGGCCCAGAATGAGTTAAAACTGATGAAGAGGAAGACCATCCTCTTTATAGATGAGATCCATCGCTTCAACAAGTCACAACAGGATACCTTCCTCCCTCATGTGGAGTGTGGGACAGTGACTCTGATCGGGGCAACCACGGAGAACCCTTCGTTCCAGGTGAACGCGGCTCTGCTTAGCAGGTGCAGGGTCCTGGTTCTGGACAAGCTGTCTGTGGAGGCAATGGGGTCGATCCTGCTCAGGGCCGTCGCTATGCTGGGGATCAGTGTACTGGGAGAAGATCTCAACGACCGCATAGATCAAGACGAGTTAGACCCAACCAAGCTCAGATCAGAACCAAAGGTCTATATTGAGCAGAAGGCTCTGGACACCATAGGACACCTGTGTGACGGCGACGCCCGGGCGGGGCTCAACGGACTCCAGCTGGCTGTCCAGGCCCGGGTGGGTGCAGCCCGCCCTGGCCAATCAGGATCTGGCAGTACCTCAcgtgacattgtggtgcaggagGAGCATGTGAAGGAGGGCCTTCAGAGGTCCCATATCCTCTACGACAAAGCAGGTGAGGAGCACTATAACTGCATCTCAGCGCTGCACAAATCAATGAGGGGCTCCCACGAGAACGCTTCCCTCTACTGGCTGGGCCGCatgctggagggaggagaggacccCTTGTACGTGGCTCGCAGACTAGTCCGCTTCTCTAGTGAAGACGTGGGTATGGCAGATCCCTCTGCCCTTCCTCAGGCTGTATCTGCCTTCCAGGCCTGCCACTTCATCGGGATGCCAGAGTGTGAGGTGATCTTGGCTCAGTGTGTGGTGTACCTGGCCAGGGCTCCTAAGTCGGTAGAAATCTACAAGGCGTACGGTAACGTGAAGGCCAGTCTGAGGAACCATAAGGGCCCCCTACCCTCTGTTCCCCTGCACCTTCGCAACGCCCCCACCAAGCTCATGAAGGACCTGGGCTACGCTGAGGGCTACAAGTACAACCCTGCCTTCAGTGCCCCTGTGGAGCAGGACTACCTGCCTGAGGAGCTCCGAGGAATGGACTTCTTCACCTGGAACCCCTCTGACCTATAACCTTTGAGGTTGACCCATGACCTCTGGCATCTGAGGTGAAGGTTACTGTGAGGGTTATAATGCTAAAGATCAATTTTTGTGCTATGAGGACCTCTGAAAATGCTGCTGGATCTAACACAAATAGAACACTTAAGTATAAGACCAATTTTGAGTTCAATGATATCActttgttaaataaatgtaatctTGTATTGTAGATTGTTACCATTATGTTGATATATTTTGTTCAATAGACTTATAAATAAACAGAGGGA

Function

symbol description
wrnip1 Predicted to enable enzyme activator activity and single-stranded DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and regulation of DNA repair. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be active in nucleus. Orthologous to human WRNIP1 (WRN helicase interacting protein 1).

NR:

description
ATPase WRNIP1

GO: NA

KEGG:

id description
K07478 ycaJ; putative ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613514.2 True 2256 mRNA 0.50 7 70103165 70127450

Neighbor

gene id symbol gene type direction distance location
LOC110530442 foxc1 coding upstream 375691 69725327 ~ 69727474 (+)
foxf2a foxf2 coding upstream 399847 69699633 ~ 69703318 (+)
LOC110530440 foxq1 coding upstream 409203 69692289 ~ 69693962 (+)
LOC100499175 LOC106569154 coding upstream 512126 69578994 ~ 69591039 (+)
dusp22b LOC106569155 coding upstream 526349 69562986 ~ 69576816 (+)
dhx30 dhx30 coding downstream 8005 70135455 ~ 70148930 (+)
LOC110530450 LOC106569144 coding downstream 44981 70172431 ~ 70186472 (+)
LOC110530454 LOC106569140 coding downstream 323557 70451007 ~ 70460534 (+)
LOC110530455 LOC106569138 coding downstream 336398 70463848 ~ 70493098 (+)
rpe65a LOC106569137 coding downstream 389038 70516488 ~ 70525948 (+)
G741425 NA non-coding upstream 40805 70055936 ~ 70062360 (+)
G741417 NA non-coding upstream 54797 70048141 ~ 70048368 (+)
G741369 NA non-coding upstream 101968 70000866 ~ 70001197 (+)
G741162 NA non-coding upstream 255731 69847173 ~ 69847434 (+)
G741161 NA non-coding upstream 257568 69845381 ~ 69845597 (+)
G741494 NA non-coding downstream 40013 70167463 ~ 70168134 (+)
G741499 NA non-coding downstream 45835 70173285 ~ 70173781 (+)
G741547 NA non-coding downstream 144298 70271748 ~ 70275710 (+)
G741665 NA non-coding downstream 307715 70435165 ~ 70435374 (+)
G741654 ccd16 non-coding downstream 314021 70441471 ~ 70463579 (+)
G740827 ripk1 other upstream 564889 69536400 ~ 69538276 (+)
G739708 NA other upstream 1098049 69004337 ~ 69005116 (+)
G739670 NA other upstream 1196200 68903365 ~ 68906965 (+)
G739648 NA other upstream 1244412 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2180543 67904516 ~ 67924427 (+)
G742095 NA other downstream 498771 70626221 ~ 70626744 (+)
G742860 NA other downstream 1568152 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2415276 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2507434 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2732958 72779485 ~ 72872336 (+)

Expression


Co-expression Network