LOC110530450 (LOC106569144)


Basic Information

Item Value
gene id LOC110530450
gene name LOC106569144
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70172431 ~ 70186472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986882.1
ATGTCGGtaggtgtgtccaaactattatTTTTTTCACAGTTCATTGCAGAGTTTGACTTGCGCTCTGTGCAGTATGAGGTGAAGTCTCCACGCCTCCAAGCAACTGTAGTTGCTGCAAATAGTTCCCCACATCCTCTGGATGACCGACAGAAGCACACCGCAGCAGAAGCTCTAGAACAGCGCAGCACAGCCTCCTTACCACTCACTGAGGAGCTGCGCCTGGAGCTTGCCCGGGCGATCGAAGCAGGCGACAGCCAGGCTGCTGCTCAGCATGCATCTGCTCTGGCTCACCAGAAGGTGGCGCTCACCATCCAACTGTCTGAGAAGAGTTACGCAGAAGGAGAGATACGTTTGGTTGTGGCAGTGGAGGACATTTCCTCTTCCTGTTGCGTCACAGTGAAAGTTTTTCCACACATGACTGTCGCAGCACTCAAGCAGCAGGTGTTTCTGGAGTATGGCTTCCACCCTCGCGTGCAGCGCTGGGTGATAGGGCAGTGTTTGTGCACAAAGCCCAGGTCCCTGGCCTCATATGGAGTCCAGAGGGATGGGGACATGGCCTACCTCTACCTGATCTCAGCCCGCCATGCCCGCCTCACCCGCCAGCTGTTCCAGCAGGACCAGGAGGGCATCCTCCTCACCCCACCTCCGCCGACCAGCAACGGGTCTACGTCCCAGGACTGGAGGGGCTACAACCCCCTGCCCTCCAGGCTCAGCCACAACTCCCAGGGGAGCACCGGACGTGAGGCTGACAGGCTGGGTATGAGCGAGATCAGAGAGGCCCTCAACAATAAACCTGATCAACCCTGCAAAGCCAGTAAAACACAGACAGAATGGGTTTGTCCCTCTTGCACCTTTATCAACAATCGTTCCCGACCAGGCTGTGAGATCTGCAGTACAGCCAGACCTGACTCGGGAGCACCGCCTCATACAACAGgagaaaggaaggagagtggAGCAGGGGGAGATTGGTGCATTGATCAGTTGACTGCCTTGCAACCTATACCATAGCCTGGATGACTGATCACACACAACTGACACCAACTTACTGCTTCTTAGGTAAAAACCCACTACTGACAAACACTAGAGGTATATGGACGTTGTTGCACACATGGAGCTCCACTTGCAGTGGCTCACAAAAGGAACTACCTGTATAGTCAATGGGAGCTGGCTTTTTGACTCTCCTCTGGACATAATGGCAGTCAGCAACCTTTGCCTTGTGGTAGactttctatttatttattttacattggGGAGGGGTAGAATAGTCCTATATTTATTCCAGAGGGGTGGGTGGTGCTTCCCTTCTCTCTACCTGATATCGCAGATGAGAGAATATGGTATATTTTGAAGTTGGCCAACTGGGATACTTTTGAGTATTGAAAGTGCAGTTTAAAACCAAGGCCTGTATTCAAACTCAGAGTAGGtgtgctggtctaggatcagatgTATTTTAAATCATAATTATATAGAcatgggggacctgatcctagatcagtactcctactctgagatacattgtgaatacaggcccaggtcTTGCTGGTCAATGGGATGAGGGGAATTAGTTGCTATGAGGCAAGTCTGTGGGAGTGACAAGGTTTTAAAGTGATTTTATTGTTGATGCGTTTCACCTATTTGTCATAAGTTTCTCTGTCTGAACTGTGTTAGTGACAGAATGTTATGTTTTGTCAAACATAACTGTATAAAATGGTGTTAGCTGAATAAACATACGTTGATCAA

Function

NR:

description
ranBP-type and C3HC4-type zinc finger-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986882.1 True 1740 mRNA 0.50 8 70172431 70186472

Neighbor

gene id symbol gene type direction distance location
dhx30 dhx30 coding upstream 23501 70135455 ~ 70148930 (+)
wrnip1 wrnip1 coding upstream 44981 70103165 ~ 70127450 (+)
LOC110530442 foxc1 coding upstream 444957 69725327 ~ 69727474 (+)
foxf2a foxf2 coding upstream 469113 69699633 ~ 69703318 (+)
LOC110530440 foxq1 coding upstream 478469 69692289 ~ 69693962 (+)
LOC110530454 LOC106569140 coding downstream 264535 70451007 ~ 70460534 (+)
LOC110530455 LOC106569138 coding downstream 277376 70463848 ~ 70493098 (+)
rpe65a LOC106569137 coding downstream 330016 70516488 ~ 70525948 (+)
LOC110530463 dtna coding downstream 518602 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 571532 70758004 ~ 70771560 (+)
G741494 NA non-coding upstream 4297 70167463 ~ 70168134 (+)
G741455 NA non-coding upstream 65366 70106153 ~ 70107065 (+)
G741425 NA non-coding upstream 110071 70055936 ~ 70062360 (+)
G741417 NA non-coding upstream 124063 70048141 ~ 70048368 (+)
G741369 NA non-coding upstream 171234 70000866 ~ 70001197 (+)
G741547 NA non-coding downstream 85276 70271748 ~ 70275710 (+)
G741665 NA non-coding downstream 248693 70435165 ~ 70435374 (+)
G741654 ccd16 non-coding downstream 254999 70441471 ~ 70463579 (+)
G741653 NA non-coding downstream 321378 70507850 ~ 70515932 (+)
G741704 NA non-coding downstream 342186 70528658 ~ 70532557 (+)
G740827 ripk1 other upstream 634155 69536400 ~ 69538276 (+)
G739708 NA other upstream 1167315 69004337 ~ 69005116 (+)
G739670 NA other upstream 1265466 68903365 ~ 68906965 (+)
G739648 NA other upstream 1313678 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2249809 67904516 ~ 67924427 (+)
G742095 NA other downstream 439749 70626221 ~ 70626744 (+)
G742860 NA other downstream 1509130 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2356254 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2448412 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2673936 72779485 ~ 72872336 (+)

Expression


Co-expression Network