LOC110530454 (LOC106569140)


Basic Information

Item Value
gene id LOC110530454
gene name LOC106569140
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70451007 ~ 70460534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613521.2
AACCAATCAGGTGCCAGTTTAGCGATGCCCTGTCAAGATGTTCACCATCAAAACAAGATTGTTTTATCCAGGTAGTGCGTCAGATCAATTTACGACTGCACAGAAATGTAAACCATTTTGGTAAGGTTTATATTATATTGGTCGTGGTACTAGAAGTGAGTTGATTTATAGTTTATACTGACTGTACACCATATTTTGCTGTGTAGTAACGTTATCTCGAAATCGCCATTTTAACTTGGTTGTGCGGCCGCTGTCAGGTAGCTAGCTCAGCTGGAActgtaacgttagttagctaaccgCTGGGTAACGTTAGCTCACTATTTCAGACGTTGACCTAGCTAGTACTACGAGTTTTCAAAATAGTATGCTACTATAATTGTCTAATATGCTTAGTTACCATACGTGATTGGCAGTTCGTTGTAGCTAGCCTGTTTTAAAGTTACAAAGTAAGCTAACTAGCCTAGTTGGCGGAACCAATCAGCTTATCAACACTAACgctactggctaacgttagctaaaggACGTTATTTACAACAACCAAACTGGACAAAACGTTGGATTTGGTCGGGTTTAAGTCGGGCTCAGCGGGTTCGCTGACCCcacagaagaagatgaagaagaggaaggagctTAATGCATTGATCGGACTTGGGGACAGTAAAAGGAAGAAAACCAAGAAGGGGTCCGGCCACAGGCTCCTACGAACCGAGCCCCCAGACTCAGAATCCGAATCAAGTTCAGATGAAGAGGAATTCAGCAACCTTGGTACTGTCGCTGCTTTCGGGAAGATAAGTTACGTGCAGTGTTGCAATGTCTGCTATCCCTTGATCCTGTTCATCATACTGGCTGCCTGTGTTATGGCTTGTGCCGGGCTGCTATGGATGCAGATTGCTCTGAAAGAAGACCTTGACTCCCTCAAAGAAAAGCTGCATACTATGGAATCCAGCCAGAAAGTGTCATCACATGAAATACCAAAACTAAGTGAAGATCTGAAGATGAAACAGAGAAAGCTGGAGGATATTGAAAGTGGAGACAAGGGTCTGAACAAACTGTGGTCCAACCTTACGGAGATGAACAGAAAGATCAGTTTGCTGGACTCTGCAGTGAACCACCTAAAGGCCAACATCAAATCAGCCTCAGACTTGATCAACCTTCCAACTACAGTTGAAGAGCTCCAAAAGagTGTAGCTACAATCGGCAGCACGTTAACCAGTGTGCAACATGATGTCCAGACAATGCAGACAACCCTTGCGGACCAGAAGAAAGAAATGGATGATCTAAAGATGACTATGGACGTAACTCACCTGAGAGAGGTTGTGAGCGAGGTTAACACGACCCAGACACTGTACCACGCATGGACCGGTGACCAGATCCACAGTCTCCACACCTCTGTGTCCAACCTCACTCAGAGGGTGTCTTTTATAGAGCAGGGCTCTGCCCAAACAACACAATTCAGTGACCTTGTGGAGGTCGTTGAACCAGTGCCCGTCAGTGGAGATGCAACCGTACCAGTAAAGGACCCAGTTACAGAGCGAGACACCAATGCAGATGGAATTAACGCAGCAACTTCAGAAGCTACACATGGTTCAAAGCCAACAAGACGTCCACGGTTTTTGACATCAAATCGCTCCAAGAGAGAGTCTGGAATAGAAAACTTTAAAACTGTGTCATTTCCTGGAGTTAACTCTTTGAAAGATCTCAATGAGCTCTTTGAGCACACAGGGACCGACCCCACCTCTCAGGGAATGTCTTACCAAGTCCTGAGGAAACTCTTTGACACCGCAACACCAGACCACCGTAGCCTGGAACGCTACGACAAAGACGGGGACCAGAGGTTCTCACTGGCTGAACTAAAAGCTGCTGCAGGTCTGTGAGAAGAACTGGCTGAGGCTGCAGAGCACAGTATTGAACAGGGAGAGGTCATCTCTGTTGTTTGTGTATGTGCCTCACAGTAATGATGGCTGCACTTTTATTGAACTGAGTATTTAATAACAAGCTGAATGTGGAACAGTGGAACTGGCATGCTCCCCTACACACTTAAGCTACAGTCAGCTACCCAGATAGGTTTGTTTCTTATTATTTGGCAAAACAGTTTACAAAATGTACATTTCCGAAATCACATTTTTTGATTGATGACAAGTGAAGTTGATGTGAAATGAATGGTTGAATAGGGACATCATGACTTAACCAAAATATAACTTATCAGAATCTAGTACCTACCACAAACTTTCCCATTTAGGTAAGTTCAGTTAGTCTTTGCTTATTGCTTGTTTTGTTTAGTGTCTTGAGTTATTTTCTGCATTTTATTGTAACACCGAGACTAAACGTATCCTTAACCCATTTTTTATTAAGTCTGCAAAATTCTAAGGGCTATAAACATGCTCTTTTAACTAGTTTGAGTCACCTTGAAATATTAACTCCTGAAGCATATGTAGAAATAATACAATGTTAATGGATTCATACAAGTGGAGTGTTAGCTTCAATTTGCTGTATATTAGTGTTGTGTGTAGTACAGATGAAGAGACAGAAGTAGGCACCCCTGGTTGTGATAATGTAACAGGTAGTTATAGAAGCACTGATCTCTCTCAACTTAACCTTGTTCTTTTGTGTGGGCCGTTACATTCTAAAATGCAAATGTACAAATCAGGACATGTCTACTCACTCAACACTGTTGTATTATGTAAATATGGTAGACTTTTTAATATGGCATCCTGTAAGATTGACCTGTTTGGGGGGGGGCTGCATAGAGGTCTGTAGAAAATCCTCAGCATAGTACTTTAATGGAAATGATTGTATTAAGTTGTGCTTTGCATGTTGCTAATAATATAACTGTCTAATGTATCGATTTTAACATAGAGGACTGTTTGAGGGTAATTTGGCTCTGCAGGATAATCGGGTGGAGTTCTGGAACAAAAAATTAGGGCAAACAGATTTAGAATTGCCATTTTGGTTTCCGACAGGAATATTGTTCCTATAAAGCTATGTGCTTTGGGGATACTGTGGGGATTTTATGAACGTGTTGTGTGAGCACTAATTAAAGTGAAAATGTGGATTACAAGGA

Function

NR:

description
EF-hand calcium-binding domain-containing protein 14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613521.2 True 3061 mRNA 0.42 9 70451007 70460534

Neighbor

gene id symbol gene type direction distance location
LOC110530450 LOC106569144 coding upstream 264535 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 302077 70135455 ~ 70148930 (+)
wrnip1 wrnip1 coding upstream 323557 70103165 ~ 70127450 (+)
LOC110530442 foxc1 coding upstream 723533 69725327 ~ 69727474 (+)
foxf2a foxf2 coding upstream 747689 69699633 ~ 69703318 (+)
LOC110530455 LOC106569138 coding downstream 3314 70463848 ~ 70493098 (+)
rpe65a LOC106569137 coding downstream 55954 70516488 ~ 70525948 (+)
LOC110530463 dtna coding downstream 244540 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 297470 70758004 ~ 70771560 (+)
LOC110530465 LOC106569128 coding downstream 370177 70830711 ~ 70841350 (+)
G741665 NA non-coding upstream 15633 70435165 ~ 70435374 (+)
G741547 NA non-coding upstream 175297 70271748 ~ 70275710 (+)
G741499 NA non-coding upstream 277226 70173285 ~ 70173781 (+)
G741494 NA non-coding upstream 282873 70167463 ~ 70168134 (+)
G741455 NA non-coding upstream 343942 70106153 ~ 70107065 (+)
G741653 NA non-coding downstream 47316 70507850 ~ 70515932 (+)
G741704 NA non-coding downstream 68124 70528658 ~ 70532557 (+)
G741748 LOC106569134 non-coding downstream 143942 70604476 ~ 70606732 (+)
G742087 NA non-coding downstream 158580 70619114 ~ 70619350 (+)
G742094 NA non-coding downstream 164613 70625147 ~ 70625422 (+)
G740827 ripk1 other upstream 912731 69536400 ~ 69538276 (+)
G739708 NA other upstream 1445891 69004337 ~ 69005116 (+)
G739670 NA other upstream 1544042 68903365 ~ 68906965 (+)
G739648 NA other upstream 1592254 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2528385 67904516 ~ 67924427 (+)
G742095 NA other downstream 165687 70626221 ~ 70626744 (+)
G742860 NA other downstream 1235068 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2082192 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2174350 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2399874 72779485 ~ 72872336 (+)

Expression


Co-expression Network