XLOC_002587 (slc35e4)


Basic Information

Item Value
gene id XLOC_002587
gene name slc35e4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7901012 ~ 7913591 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004815
AACACATAATAACACGTGTATGCAGACAAGACGGAATGTTTTTACTGTCTGCTTCCAAAACACACGGTTGCTATACAGCGCGTTAAGACCAGTCATAGCACTGTTTCTAACACATTTCCGACTCGTTTCATGCGCATATCAACAGATTTACTTTGCGAAGTATGTTCGTTGCAGACTTAAGATGTGTTTGCCCCGCAGATGCGAAGATGAAGCGACCATGATCAGCGCCGATGGCCGCTCCGCCAAGCGCGAGGAGACCCGGGACTCCGGCAAGAAGAGCCGGCGAGCTCCAGAAATGCTGCACCTCATGTTCGCCGTGTCCGTGTGGCTCGTGACAGGCACCACCATATCCAGCCTCAACAAATGGATCTTCGCCGTCTACAACTTCAGATACCCGCTGCTGCTTTCGGCCCTGCACATGCTGACGGCGATAGTGGTGGACTACGGGCTGATCAAAAGCAGGGTCGTCCGGCACAAAGGCGTCGGCGAGCAGGACCTGACCACCAGCGCCAAGTGCAAAGTGTTCCTGCTGAGCCTGACGTTTTGCGCCAGCATCGCGTTTGGGAACGTGGGACTCAATTATGTGCAGCTTTCGTTTGCGCAGATGATCTACACCACGACGCCGCTGTTCACGCTGGCGATCTCGGCGCTGATTTTGGGCAAGCAGCACCACTTTCTCAAGTACACCGCGATGATGCCCATCTGCCTCGGGGCGTCATTCAGCATTATGGGCGAGGTGCAGTTCGACCAGACCGGCTGCCTGTTTGTGTTCGCTGCCACTATGCTGAGAGGCGTTAAAACTATTCAGCAAAGCATCTTGCTCCAGGAGGAGAAGATCAACTCTGTCTTCCTGCTGTACCTGATGTCCATCCCCAGCTTCTGCATCCTGGCCGTAGCTGCTCTGGCCTTGGAAAACTGGGCTGCGCTTCAATCCCCCTTCCAGTATGACCACCATCTCTGGGGCTTCATCTTGCTCAGCTGTCTGGGGTCAGTGCTTTATAACTTGGCCAGCTGCTGTGTCATTACCCTGACCTCCGCTGTTACGCTGCACATACTGGGCAACCTGAATGTGGTGGGCAACCTGCTGCTCTCCCAGGTGCTGTTTGGGCATGAGCTGACGGCTCTGAGCTGTGCCGGAGCCGCCCTCACACTGTCGGGCATGATAATCTACCAGAACTCAGAGATCATTGTGGCTTACCTTGATGCCCGGAGAGCCAGAACGCCAGCCGGTGGCGGTGGAGAGGAAGAGCTTCTTGCCAGGGAGAATGACTTGAACATTTCACAGACAACTGCAGAAACGTGTTCAGATGAAGAATCATTTGCAGATGCTCAAGAACCTAATGAGAGGACAGAGATGGAGATTCATGAGAAAACTGATTGAAGGAACGTACCTAAGATGATGTTCCAAAACCTAGTGAGCTGCTGCAGTGTTGACTAGAGGCCAGGAACTAAAGGAGGAAAATGAAAGTAATTGGGATTTGATGTGGTCTCTGGCCCTTAACAACTTAATCAGGGGGGCGAAGCAACTTTTTTTATAGTTTAGTAAAACTAAAATCatgaaaaacatatttatatttggaGCTTATTTCTAAAGCAACATTTCTCATCAACGTGACAATTAAAAAACAAGACTACATGCTAATTAATCATTCAGATATttaccaaaattaaaataaactataaaacattttacaaaatatccataaaaatgtattatagtatGTCAGTATCCAGGACGCTCTTGAAGAAGAGATTACAAATGCTCTGGTAAAATAAacctttgaataaataaattaattaatcaagtaaattaaataataagaatGAATATAAAATGATACGAGCCTAGGCATTCTGTAAATCACAAAACGTTTTTGTGTTCTACAAAAGAACGCCATACGTGACAAATAAAGTTAACTTTGGGTAATCTATTtctttcccagtactgcgttgtggctggaagggcatccgctgcataaaacacatgtcggaatagttggcagttcaatccactgtggcgaccctgataaataagggactaagccaaaggaaaattaataaatggatgaataatcTATTACTTTACGTCAGCTGCATCCGTTTGTGTCGAAGAGATACGCACTTTTCACGCAcaattttaaagcataaaatataACAGGGATCATGCCGTGTCGCTgtcttgtgaaaaaaaaaaaaaa
>TCONS_00004816
ACATCCAGCTTCAGCAGTGCGGGAATACGGTAATAACAAATGAGATTAGGCGAAACCTTCCTCCGTTTCCATCTCAGAGTCACTTTAATCTTGATTGAGATGCGAAGATGAAGCGACCATGATCAGCGCCGATGGCCGCTCCGCCAAGCGCGAGGAGACCCGGGACTCCGGCAAGAAGAGCCGGCGAGCTCCAGAAATGCTGCACCTCATGTTCGCCGTGTCCGTGTGGCTCGTGACAGGCACCACCATATCCAGCCTCAACAAATGGATCTTCGCCGTCTACAACTTCAGATACCCGCTGCTGCTTTCGGCCCTGCACATGCTGACGGCGATAGTGGTGGACTACGGGCTGATCAAAAGCAGGGTCGTCCGGCACAAAGGCGTCGGCGAGCAGGACCTGACCACCAGCGCCAAGTGCAAAGTGTTCCTGCTGAGCCTGACGTTTTGCGCCAGCATCGCGTTTGGGAACGTGGGACTCAATTATGTGCAGCTTTCGTTTGCGCAGATGATCTACACCACGACGCCGCTGTTCACGCTGGCGATCTCGGCGCTGATTTTGGGCAAGCAGCACCACTTTCTCAAGTACACCGCGATGATGCCCATCTGCCTCGGGGCGTCATTCAGCATTATGGGCGAGGTGCAGTTCGACCAGACCGGCTGCCTGTTTGTGTTCGCTGCCACTATGCTGAGAGGCGTTAAAACTATTCAGCAAAGCATCTTGCTCCAGGAGGAGAAGATCAACTCTGTCTTCCTGCTGTACCTGATG

Function

symbol description
slc35e4 Predicted to enable antiporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E4 (solute carrier family 35 member E4).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015297 antiporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050417-407 Predicted to enable antiporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E4 (solute carrier family 35 member E4).

Ensembl:

ensembl_id ENSDARG00000009459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004815 False 2198 mRNA 0.46 2 7901012 7909839
TCONS_00004816 True 766 mRNA 0.56 4 7902345 7913591

Neighbor

gene id symbol gene type direction distance location
XLOC_002585 BX294661.1 coding downstream 8328 7870627 ~ 7892684 (-)
XLOC_002586 NA coding downstream 14972 7883753 ~ 7886040 (-)
XLOC_002584 inpp5ja coding downstream 42459 7831439 ~ 7858553 (-)
XLOC_002583 mat2aa coding downstream 79326 7810455 ~ 7821686 (-)
XLOC_002582 mpx coding downstream 115067 7778870 ~ 7785945 (-)
XLOC_002588 osbp2 coding upstream 3129 7916720 ~ 7974155 (-)
XLOC_002589 ewsr1a coding upstream 61994 7975585 ~ 7988417 (-)
XLOC_002590 NA coding upstream 67528 7981119 ~ 7983744 (-)
XLOC_002591 atp6v0a2a coding upstream 75155 7988746 ~ 8033468 (-)
XLOC_002592 nfkbil1 coding upstream 121097 8034688 ~ 8041948 (-)
XLOC_002575 BX537303.2 non-coding downstream 388889 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 647114 7238244 ~ 7253898 (-)
XLOC_002571 NA non-coding downstream 839475 7050325 ~ 7061537 (-)
XLOC_002602 NA non-coding upstream 705127 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 725330 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 762299 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 928107 8841698 ~ 8858568 (-)

Expression


Co-expression Network