LOC110530455 (LOC106569138)


Basic Information

Item Value
gene id LOC110530455
gene name LOC106569138
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70463848 ~ 70493098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613522.2
AAGCGGAAGATGGTAGATGGTCTTTTCACCACTGAGGAATTAAGAACGCTTTTCAATCGGAAGGTTTCTAATCTTGCGAGCAAACGTTAGCAAGCAAACTACCGCACTGCAAGATGCAATTGGGACATTTTGAAACGAATTTTATCAAGGATGTCGCCGAATAATTTGGTATTTTCATTCTTAATCGTGTGTTAACGATCTTGAGAGTATCTTTTCCAGTTGTTTTGTTTTTACGTGTGTGTTGTTTCTGTTGTAACACCCACATCCATTATATGGTTGAAAAACTGCAATCTAGCTAGGTTAGGCAAATAGATAGCTATTAAGGTAGCTATTGCAGCTGTCATTGACAACCATAGTCAACATAATACAATATTCATCTGAAGTAGCTAGTCTCCTTGCTGGCTAGTAACGTTAAATCATGACAGGGGAAAAGATTCGCACATTGCGGAAAGACCATAACAACAAGCCTAGTAAGGATGGGTCTATAACGTTAATGGAAACATTTGATGAATCTACAAATGGAACAATAACCTCTCCAACCCCCAACGGTACCGCCATCACGTACAAATCAAACAAGAACCATAACAAGACGGTGAAACCTATGGCACTGCAGCAGCAGCTATCGAATATCAATGCAAACAATACCAATGCCAATCAATCAGTTGGTACTATCATCGATGACTATAACAAGAATCCCATCATTCTAACCAATGGTAATGAGGACTTGAATTTGGAATTCCCTGTTCACGAATGTGTGTTCAGAGGAGATGTGCGTCGCTTGTCCTCACTCATTCGGACCCAGAACATCTCCCAGAAAGATGTGCATGgaAACACACCTCTTCACGTAGCTGTGATGATGGGTCACAAAGAGTGTGCCCTCCTACTCCTGGCCCATAATGCCCCTGTGAAGGTGAAGAATGCCCAGGGCTGGAGCCCCCTGGCAGAGGCCATCAGCTATGGAGACCGACAGATGATCACAGCCATACTGCGAAAGCTGAAGCAGCAGTCCAGAGAGAGTGTGGCGGACAAGAGGCCCAAGCTGCTGAGAGCGCTGAAGGAGCTTGGTGACTTCTACTTTGAGCTTCACTGGGACTTTCAAAGTTGGGTGCCCTTGCTCTCCCGTATTTTGCCATCTGATAACTGCAAGATCTACAAGCAGGGGATCAACATCAGACTGGACACAACTCTGATAGACTTCTCAGATATGAAGTGTCAGAGAGGAGACCTCAGCTTCATCTTTAATGGAGATGCTCCGCCCTCCAAGTCCTTCTATGTCCTGGATAATGAGCAGAAGGTGTACCAGCGGATACACCACGAGGAGTCTGAGATGGAGACTGAGGAGGAGGTGGACATCCTGATGAGCAGTGATGTCTATTCTGCCACCCTGTCCACCAAGTCTATCACCTTCTCCCGCAGTCAGATCGGCTGGCTCTTCAGGGAGGACAAGACGGAGAGAGTTGGTAACTTCCTGGCTGACTTCTACTCTGTGAACGGCCTGGTGCTGGAGTCCAGGAAACGGCGGGAGCATCTGAGTGAGGAGGACGTCCTGAGGAACAAGGCCATCATGGAGAGCCTGAGCAAAGGAGGGAACCTGGTGGAGCAGAACtatgagCCTCAGAGAAGGCTGTCCCTCACGGCTCCAGACCCCAACACTATCTCCTGGGAGGAGTACATTTCTGCAGAGCACGGAAAGGCACCTCATCTTGGGAGGGAGCTTGTGTGTAAGGAGAGCAAGAAGAACTTCAAAGCGACCGTAGCCATGAGCCAGGACTTCCCTCTGGGCATTGAGTCGTTACTGAATGTGTTGGAGGTCATAGCCCCATTCAAACATTTCAACAAACTAAGAGAATTTGTTCAAATGAAGCTTCCTCCTGGGTTTCCAGTCAAGCTTGACATCCCTGTGTTCCCCACTATCACAGCGACGGTCACCTTCCAAGAGTTTCGCTACGATGACTTTGAAGAGTCCATCTTCTCCATCCCAGCGGACTACAAGGAGGACCCCAGTCGcttccctgacctctgacctggttGTCATAGCAAGCAGAGGTGCCCCCGTCCCACCCGCTCGGAAACTGACAAACAGCCTCTACCTACCTACATTATTAAAAGGAAAATAACCAACTTAAGTTGAGACAAAATTAGAATGTGCCATCTTATTGTttgatgtctgtctgtgtgttctgatGGAAAAAAAAGGGAATTATCTCTTGGCCCTGAGTGTTCAATTTGTAGATATGTCCTCATAGCAAACCAATGCAAACAGGACTCGCATTGCACCACAACCATGTTCATATGTGTAGCAATAACAGCACAAGGTCCCCCAAAAATATTTGATATCATCTGCTTAACAACTTCATTAACCTACTACATGATCACTGCTCTGAAAAGTTATGGAGTTGACTGTGACATCTCCAACGTGCACTTCTCCAGGCTTAGCACTCACTGCATCTAGCGTCTACCCTTTGGAGACTACCCTTTTCTTATAAACTAAGTGTTCGAAAAATAGAGATGTCATAACTGAACTGAGCATAAGTTTATCATATTTAAATTATGTAGATTATATAGGCCTAGTAAAAAGGGCCAACACTGTGTAGCAATACATTTTCAGTACATAAGAATGTTATTTATAAACCTGCTGGtttaaacagcattcttacacagATCAATACCCAAGCctttcgctcgctcgctctcagGATGCAAACACCTGTATTTTCAGGTTAGCTCATCTATCTTACCTCCTGGCTATCACCGTCTGTTTCAAGTGATCGTGTGAATTTGGGGCTCTGTTCAATCCGTAGCGCTGAAGATCCGCTTTATAGTGCGATTGACAATTATAGCCAATTTTCCTGTGGtcgcagagactgcattcacggtaaatgctgtcggctcaatcggaaattacctttacattttaaTGCAGATCTTCCGTGATatggattgaatccagcccttaatgtgttttgtgtgtgacaGAGGACTGTTGTACTGTActttaaaggtgtgtgtgtgagggaaccCAGATGGGGTTTCAGGAAAGCTGTTCTAGTTTGATACTGCACTGACGTTAAGTACATTTTATTGCATGCCATGTTGACCCAATTGGATTACTTATGTCCTCGAGTGTATATTTCCTACACACTTGTTATACCTGCTGCCATCTCTTCAAATTATTCAGGAAGACCAACTTCTACCATATAAATATTGTAACCACACTAAAACCCTTTGGTCGCATGCTGACCTGGTGCTTTTAGGTGCTTTTACCACAAGATTATTTCCTGTCCGTAGTACACTACTACATTACATTTCAATGAGAGCTTATACAGTTGGACTATCAACCTGTAAAATCCATATGGTTTTTGAGATATGACCAGCAGTAGGTAACAGTTTGAGTCATAAGAATGTATATCTGGCTTGAGCCTACTGGTATTTAGAAATGTATTGCAGCTTTTCCCATTCCTTTAAATAAATCACCAGCATCATG

Function

NR:

description
ankyrin repeat domain-containing protein 13C-like

GO: NA

KEGG:

id description
K21437 ANKRD13; ankyrin repeat domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613522.2 True 3484 mRNA 0.44 13 70463848 70493098

Neighbor

gene id symbol gene type direction distance location
LOC110530454 LOC106569140 coding upstream 3314 70451007 ~ 70460534 (+)
LOC110530450 LOC106569144 coding upstream 277376 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 314918 70135455 ~ 70148930 (+)
wrnip1 wrnip1 coding upstream 336398 70103165 ~ 70127450 (+)
LOC110530442 foxc1 coding upstream 736374 69725327 ~ 69727474 (+)
rpe65a LOC106569137 coding downstream 23390 70516488 ~ 70525948 (+)
LOC110530463 dtna coding downstream 211976 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 264906 70758004 ~ 70771560 (+)
LOC110530465 LOC106569128 coding downstream 337613 70830711 ~ 70841350 (+)
LOC110530467 ub2v2 coding downstream 348409 70841507 ~ 70844898 (+)
G741654 ccd16 non-coding upstream 269 70441471 ~ 70463579 (+)
G741665 NA non-coding upstream 28474 70435165 ~ 70435374 (+)
G741547 NA non-coding upstream 188138 70271748 ~ 70275710 (+)
G741499 NA non-coding upstream 290067 70173285 ~ 70173781 (+)
G741494 NA non-coding upstream 295714 70167463 ~ 70168134 (+)
G741653 NA non-coding downstream 14752 70507850 ~ 70515932 (+)
G741704 NA non-coding downstream 35560 70528658 ~ 70532557 (+)
G741748 LOC106569134 non-coding downstream 111378 70604476 ~ 70606732 (+)
G742087 NA non-coding downstream 126016 70619114 ~ 70619350 (+)
G742094 NA non-coding downstream 132049 70625147 ~ 70625422 (+)
G740827 ripk1 other upstream 925572 69536400 ~ 69538276 (+)
G739708 NA other upstream 1458732 69004337 ~ 69005116 (+)
G739670 NA other upstream 1556883 68903365 ~ 68906965 (+)
G739648 NA other upstream 1605095 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2541226 67904516 ~ 67924427 (+)
G742095 NA other downstream 133123 70626221 ~ 70626744 (+)
G742860 NA other downstream 1202504 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2049628 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2141786 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2367310 72779485 ~ 72872336 (+)

Expression


Co-expression Network