rpe65a (LOC106569137)


Basic Information

Item Value
gene id rpe65a
gene name LOC106569137
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70516488 ~ 70525948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613534.2
TCAAAGTCCCATACATAGGGGACTTAACGTTTATAGACCCCAATGTACACAAAGTACTGTATTACTCCATAGAAATGTACATTTAAATAAGCAATACTCAGCCGAGATAAGCATTTACACAGTAACTCTGAATCACTCATGCATATATACAAGTCAAGAGCATAAGGCCCATTTGAAATTTGTGCCTTTTGACTATTGTTAATGTTCTGCCAAATAGTCAATTGAGCAGGAGGGTAAGGGAAATCTATCCCAGTTACAAAATGTAGTCTACAGGAAAGTAGAAAATAATTACATTAATTTAGTGAAATGCCATGAATGTATCTATCTATAGGCTCTCCCTGCTACTTTGGTTTGGTAAATATATAAATGATTGAACAATCACATCTTATGTTATTGCAACACATTTGCCAGGCAAACACAGGCAAAATAAATCCGGTTTTAGAGGGCCACCATTGTGCAACCAAGCTAAGGATATTGGCACAATGGCATTCTTTCTCACGATGCAACCTGATTGGTCAAGAGAAAGGTTACAGCCACTCAGGgtcgagaaagagagaggggctcGATGTATAAAGACGCTAAACCCACTGGGAGCGCCAAGACTTCCAGTTCAGAAGTGATCTGAAGCCACctgtatgtgagtgagtgtgtgtctctgtgctcccACAACAAGGAGGAACCATGGTCAGCCGATTTGAGCACCCTGCTGGTGGCTACAAGAAGATCTTTGAGACAGTTGAGGAGTTATCAGAGCCTGTCCCTGCAACAGTTACAGGTAGGATTCCTTCATTTCTGAAGGGAAGTCTTCTTCGTCTGGGCCCTGGCCTGTTTGAGGTTGGAGATGAGCCTTTCTACCACCTCTTCGATGGCCAGGCCCTCATGCACAAATTCGACTTCAAAAATGGCCAAGTCACCTACTTCAACAAGTATGTTAAAACAGATGCCTATGTGCGTGCCATTACAGAAAAGCGTGTGGTGATCACTGAATTTGGCACCTTCGCCTACCCAGATCCCTGCAAAAACATCTTCTCCAGGTTTTTCACTTACTTCAAGGGTGTTGAGGTGACAGACAATTGTCTGGTGAACGTTTACCCCATCGGTGAAGATTACTACGCCGTCACAGAAACCAATTACATCACTAAAGTCAACACTGACACGCTGGATACACTGAAGAAGGTGGACTTGTGCAACTACGTCAACATCAATGGAGTGACAGCCCACCCACACATTGAGAGAGACGGAACAGTGTTCAACATCGGAAACTGCATGGGGAAAGGAGCATCACTGGCCTACAACGTTGTCAGAATCCCACCCACTCAGAAAGACAAGTCAGACCCCATTGAAAAGTCCAAGGTTGTGGTGCAGTTCCCCAGTGCCGAGAGGTTCAAGCCCTCCTATGTGCACAGCTTTGGCATGTCGGAGAACTACTTTGTCTTTGTGGAGACCCCTGTGAAAATCAACCTGCTGAAGTTCCTCAGTGCCTGGAGCATCCGAGGCTCCAACTACATGGACTGCTTTGAGTCCAACGAGGTTCTCGGGACATTGTTCCACATCGCCAGAAAGGACAttggaggaggacaaggagaataCATTGACCATAAGTTCAGGGCCGCTCCCATCAACCTGTTCCATCACATCAACACTTATGAGGACAATGGTTTCATCGTGGCTGATGTGTGTACATGGAAAGGGTTTGAGTTTGTGTATAACTACCTTTGGCTGGCCAACCTGCGCTCCAACTGGGAGGAGGTGAAGAAGGCAGCCATGATGGCACCTCAGCCAGAGGTCAGGAGATACGTCATCCCACTGGACATCCACAGGGAGGAGCAGGGAAAGAACCTGATATGCCTGCCGTACACCACGGCCACAGCAGTGATGCGTACTGACGGGACAATCTGGCTGGAGCCTGAGGTGCTGTTCTCTGGTCCCCGCCAAGCCTTTGAGTTTCCTCAGATCAACTATGAGAAGCACGGTGGGAAGAACTACTCATATGCCTATGCCCTGGGCCTCAACCACTTCATTCCTGACAGGATCATCAAGCTGAACGTGAAGACCAAGGAGACCTGGGTGTGGCAGGAGCCGGACTCCTACCCCTCAGAGCCTCTCTTTGTGCAGACCCCCGATGGCGTGGATGAGGATGATGGAGTTCTGTTGACCGTTGTAGTATCCCCCGGGGCCCAGAAGTCAGGGTacatgctgatcctcaacgccAAGGACATGTCGGAGATCGCCAGGGCAGAGGTGGACTGCCCTATACCCGTCACCTTCCACGGAATGTACAAGAAATAACATTTCAATAATCCTCCAGGCACAAAGACTAGTAGTCACCATTCCACGGTATTCATACTAAGCATCACATTTCCCTCAGCAATAGAACAAAcaaataaagtaaagtaaagtataGGCTACAAATAACTTGGCTTGTTGTGTCAGCAAAAACGAGACAAGTATCTGATCATCTCCCATCATGATTTAACTTTCTGCCACCTACGATTCAGTATGGTTGGGTGTCCATTTTGATGAAAATGTACCATTTCGTGGTATGAATGGAACCTGCTGGTATCAGGGCATAAGTAGGTTTCCTACAATTATTTCTCAGTGAGCCCACAGCATAACAACATCAGCGGCCTCTCAGTCACGACACCCTGATTGGTTAATACAATTGTTGTGTCAGTGCTGGAAATCAATGAGTTTGTTCACAGTACCATGTCTCTTGAGTACTTCAGGGTTGGAATAATTAAAATATAATCAAAAT

Function

NR:

description
retinoid isomerohydrolase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613534.2 True 2755 mRNA 0.46 13 70516488 70525948

Neighbor

gene id symbol gene type direction distance location
LOC110530455 LOC106569138 coding upstream 23390 70463848 ~ 70493098 (+)
LOC110530454 LOC106569140 coding upstream 55954 70451007 ~ 70460534 (+)
LOC110530450 LOC106569144 coding upstream 330016 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 367558 70135455 ~ 70148930 (+)
wrnip1 wrnip1 coding upstream 389038 70103165 ~ 70127450 (+)
LOC110530463 dtna coding downstream 179126 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 232056 70758004 ~ 70771560 (+)
LOC110530465 LOC106569128 coding downstream 304763 70830711 ~ 70841350 (+)
LOC110530467 ub2v2 coding downstream 315559 70841507 ~ 70844898 (+)
LOC110530469 LOC106569124 coding downstream 410456 70936404 ~ 70975314 (+)
G741653 NA non-coding upstream 556 70507850 ~ 70515932 (+)
G741654 ccd16 non-coding upstream 52909 70441471 ~ 70463579 (+)
G741665 NA non-coding upstream 81114 70435165 ~ 70435374 (+)
G741547 NA non-coding upstream 240778 70271748 ~ 70275710 (+)
G741499 NA non-coding upstream 342707 70173285 ~ 70173781 (+)
G741704 NA non-coding downstream 2710 70528658 ~ 70532557 (+)
G741748 LOC106569134 non-coding downstream 78528 70604476 ~ 70606732 (+)
G742087 NA non-coding downstream 93166 70619114 ~ 70619350 (+)
G742094 NA non-coding downstream 99199 70625147 ~ 70625422 (+)
G742108 NA non-coding downstream 113314 70639262 ~ 70640529 (+)
G740827 ripk1 other upstream 978212 69536400 ~ 69538276 (+)
G739708 NA other upstream 1511372 69004337 ~ 69005116 (+)
G739670 NA other upstream 1609523 68903365 ~ 68906965 (+)
G739648 NA other upstream 1657735 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2593866 67904516 ~ 67924427 (+)
G742095 NA other downstream 100273 70626221 ~ 70626744 (+)
G742860 NA other downstream 1169654 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2016778 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2108936 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2334460 72779485 ~ 72872336 (+)

Expression


Co-expression Network