LOC110530467 (ub2v2)


Basic Information

Item Value
gene id LOC110530467
gene name ub2v2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70841507 ~ 70844898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613547.2
GTGTGCCATGGTGACCGGTAGTTTACACTTTggaatactgtatattattttaaaGACCTTTCTCAGCAGTCGGGTGTTAGTTACCCTGCATAGACCAAAAAGAGCAAGCAAAAACTCCCTAAATTTAGTCTTGAGTGGTccatcctcttctggctgtatcaGCTGAGGTCCTGTGTATATACTCAGCATTATTCTTCAGCTTATTTTGTAGCTGTGTAATGCGCACCTCCTGCTATTGACCACCTTGTCAGCCACATGCATCTTAAAATATTGTACAGAATCTAGTAGTGTATAGTCGAATACGAGGAAGGAACCGGTGGGAGCGTTTTCTGCAGACACCTAACCTGACACACCCCTCGTTTATGGCACTTTTTGTGTGCTTCTGGATTTGGCTGAAGAAGATGGCGGCCTCCTCAGGAGTTAAAGTTCCACGTAATTTTCGCTTGTTGGAAGAGCTTGAAGAGGGTCAGAAAGGTGTTGGAGATGGGACAGTCAGCTGGGGCCTTGAAGATGATGAAGATATGACGCTAACACGGTGGACAGGCATGATCATCGGACCGGCACGAGTAAGTGTGACCGCAGCAGGAACTAATTATGAGAACAGGATATACAGTCTGAAAGTGGAATGTGGTCCTAAATATCCTGAATCACCTCCAATTGTTAGATTTGTAACAAAAGTTAGCATGAATGGCATAAACAATTCCAATGGGATGgtggatACACGTAGCATACCAATTCTATCTAAATGGCAAACCTCTTATAGCATTAAAGTTGTTCTTCAAGAGTTAAGGCGTCTAATGATGTCCAAAGAGAATATGAAGCTTCCACAACCACCAGAAGGACAAACCTACAGTAATTAACTGTTGTTTACTTTTGACCCCTATTGTCTTAAATCGTATTCTCCTTGAAATGATTGTGTAGGCCATCACAATCGTGATGATTCTCACTCCACTATTTTAAGAATTTAGACTGAGCAAGATTGGACATTCCTTTTAGTTAGCCTATGGTCATTCTAGAACGTCCCCACTGCgagtgaaattatgtttttaaGACCACAAGTGTACACAGTTATTTCTCTTCTATTGAAGTTAGTGTGACCATTCACTTTATGATTGTGAGATGTATCAAGTTGGCTTTACAAGAGAAGAATGGCACCAAGTGTAtacccaagtcaaacaatttatGTTTCGAATGGCAGgtgactaaaataaataattgaaatgTGTGTATGATGGCATGCTTTAACAAATAAATAGTTGACCAAAAGCTACATTTAAATTGTAATTTAGTCAAATGTAGGAGGTATGTTGACATATCATGCAGATGAAGATTAACCAATGGCTTTAGGCCAGAAGTAGTGTCACAAGTTTTGAAGGATTTAAAAAAGTATATCTGTATTTGACACGATTCCAATAATGTTTCTGTTCTGCAGCTCTTTGAATTGTAACGTATGTTCAAGCCTGTTCTGTTCTGAAAAAAATACCCCATGTATTTAACTTCTAAAGAAAATTACAAGTTTATGACATTGCGATTTCTCTGACATTAAAATCACTGTCTTGAGAAATA
>XM_021613548.2
GTGTGCCATGGTGACCGGTAGTTTACACTTTggaatactgtatattattttaaaGACCTTTCTCAGCAGTCGGGTGTTAGTTACCCTGCATAGACCAAAAAGAGCAAGCAAAAACTCCCTAAATTTAGTCTTGAGTGGTccatcctcttctggctgtatcaGCTGAGGTCCTGTGTATATACTCAGCATTATTCTTCAGCTTATTTTGTAGCTGTGTAATGCGCACCTCCTGCTATTGACCACCTTGTCAGCCACATGCATCTTAAAATATTGTACAGAATCTAGTAGTGTATAGTCGAATACGAGGAAGGAACCGGTGGGAGCGTTTTCTGCAGACACCTAACCTGACACACCCCTCGTTTATGGCACTTTTTGTGTGCTTCTGGATTTGGCTGAAGAAGATGGCGGCCTCCTCAGGAGTTAAAGTTCCACGTAATTTTCGCTTGTTGGAAGAGCTTGAAGAGGGTCAGAAAGGTGTTGGAGATGGGACAGTCAGCTGGGGCCTTGAAGATGATGAAGATATGACGCTAACACGGTGGACAGGCATGATCATCGGACCGGCACGAACTAATTATGAGAACAGGATATACAGTCTGAAAGTGGAATGTGGTCCTAAATATCCTGAATCACCTCCAATTGTTAGATTTGTAACAAAAGTTAGCATGAATGGCATAAACAATTCCAATGGGATGgtggatACACGTAGCATACCAATTCTATCTAAATGGCAAACCTCTTATAGCATTAAAGTTGTTCTTCAAGAGTTAAGGCGTCTAATGATGTCCAAAGAGAATATGAAGCTTCCACAACCACCAGAAGGACAAACCTACAGTAATTAACTGTTGTTTACTTTTGACCCCTATTGTCTTAAATCGTATTCTCCTTGAAATGATTGTGTAGGCCATCACAATCGTGATGATTCTCACTCCACTATTTTAAGAATTTAGACTGAGCAAGATTGGACATTCCTTTTAGTTAGCCTATGGTCATTCTAGAACGTCCCCACTGCgagtgaaattatgtttttaaGACCACAAGTGTACACAGTTATTTCTCTTCTATTGAAGTTAGTGTGACCATTCACTTTATGATTGTGAGATGTATCAAGTTGGCTTTACAAGAGAAGAATGGCACCAAGTGTAtacccaagtcaaacaatttatGTTTCGAATGGCAGgtgactaaaataaataattgaaatgTGTGTATGATGGCATGCTTTAACAAATAAATAGTTGACCAAAAGCTACATTTAAATTGTAATTTAGTCAAATGTAGGAGGTATGTTGACATATCATGCAGATGAAGATTAACCAATGGCTTTAGGCCAGAAGTAGTGTCACAAGTTTTGAAGGATTTAAAAAAGTATATCTGTATTTGACACGATTCCAATAATGTTTCTGTTCTGCAGCTCTTTGAATTGTAACGTATGTTCAAGCCTGTTCTGTTCTGAAAAAAATACCCCATGTATTTAACTTCTAAAGAAAATTACAAGTTTATGACATTGCGATTTCTCTGACATTAAAATCACTGTCTTGAGAAATA
>XM_036986098.1
TAAGGTTCATGACTGTTAGGATGATCTCTTATTTATGAACTTTCATGGGGTCAGATAGGGAAGATCATGCCAGGTCAGACTGATGTTTTACCATCAGTGTACAGTTGAAATGGTACCCTGCATTGACATCACCCATTAGAAGAGTTAAAGTTCCACGTAATTTTCGCTTGTTGGAAGAGCTTGAAGAGGGTCAGAAAGGTGTTGGAGATGGGACAGTCAGCTGGGGCCTTGAAGATGATGAAGATATGACGCTAACACGGTGGACAGGCATGATCATCGGACCGGCACGAGTAAGTGTGACCGCAGCAGGAACTAATTATGAGAACAGGATATACAGTCTGAAAGTGGAATGTGGTCCTAAATATCCTGAATCACCTCCAATTGTTAGATTTGTAACAAAAGTTAGCATGAATGGCATAAACAATTCCAATGGGATGgtggatACACGTAGCATACCAATTCTATCTAAATGGCAAACCTCTTATAGCATTAAAGTTGTTCTTCAAGAGTTAAGGCGTCTAATGATGTCCAAAGAGAATATGAAGCTTCCACAACCACCAGAAGGACAAACCTACAGTAATTAACTGTTGTTTACTTTTGACCCCTATTGTCTTAAATCGTATTCTCCTTGAAATGATTGTGTAGGCCATCACAATCGTGATGATTCTCACTCCACTATTTTAAGAATTTAGACTGAGCAAGATTGGACATTCCTTTTAGTTAGCCTATGGTCATTCTAGAACGTCCCCACTGCgagtgaaattatgtttttaaGACCACAAGTGTACACAGTTATTTCTCTTCTATTGAAGTTAGTGTGACCATTCACTTTATGATTGTGAGATGTATCAAGTTGGCTTTACAAGAGAAGAATGGCACCAAGTGTAtacccaagtcaaacaatttatGTTTCGAATGGCAGgtgactaaaataaataattgaaatgTGTGTATGATGGCATGCTTTAACAAATAAATAGTTGACCAAAAGCTACATTTAAATTGTAATTTAGTCAAATGTAGGAGGTATGTTGACATATCATGCAGATGAAGATTAACCAATGGCTTTAGGCCAGAAGTAGTGTCACAAGTTTTGAAGGATTTAAAAAAGTATATCTGTATTTGACACGATTCCAATAATGTTTCTGTTCTGCAGCTCTTTGAATTGTAACGTATGTTCAAGCCTGTTCTGTTCTGAAAAAAATACCCCATGTATTTAACTTCTAAAGAAAATTACAAGTTTATGACATTGCGATTTCTCTGACATTAAAATCACTGTCTTGAGAAATAC

Function

NR:

description
ubiquitin-conjugating enzyme E2 variant 2 isoform X1

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613547.2 False 1566 mRNA 0.39 4 70841507 70844897
XM_021613548.2 False 1545 mRNA 0.39 4 70841507 70844897
XM_036986098.1 True 1291 mRNA 0.37 4 70842926 70844898

Neighbor

gene id symbol gene type direction distance location
LOC110530465 LOC106569128 coding upstream 157 70830711 ~ 70841350 (+)
LOC110530464 mapre2 coding upstream 69947 70758004 ~ 70771560 (+)
LOC110530463 dtna coding upstream 98024 70705074 ~ 70743483 (+)
rpe65a LOC106569137 coding upstream 315559 70516488 ~ 70525948 (+)
LOC110530455 LOC106569138 coding upstream 348409 70463848 ~ 70493098 (+)
LOC110530469 LOC106569124 coding downstream 91506 70936404 ~ 70975314 (+)
LOC110530474 LOC106569352 coding downstream 290484 71135382 ~ 71412296 (+)
asic1c LOC106569349 coding downstream 636066 71480964 ~ 71640255 (+)
atg9b LOC106569346 coding downstream 814210 71659108 ~ 71682417 (+)
LOC110530483 obscn coding downstream 882890 71727788 ~ 71818121 (+)
G742195 NA non-coding upstream 28342 70812948 ~ 70813165 (+)
G742154 NA non-coding upstream 67145 70725119 ~ 70774362 (+)
G742131 NA non-coding upstream 162610 70678694 ~ 70678897 (+)
G742130 NA non-coding upstream 164833 70675587 ~ 70676674 (+)
G742120 NA non-coding upstream 183055 70658249 ~ 70658452 (+)
G742220 NA non-coding downstream 24671 70869569 ~ 70869813 (+)
G742222 NA non-coding downstream 25671 70870569 ~ 70870774 (+)
G742224 NA non-coding downstream 27955 70872853 ~ 70873079 (+)
G742228 NA non-coding downstream 31605 70876503 ~ 70876781 (+)
G742241 NA non-coding downstream 45480 70890378 ~ 70890861 (+)
G742095 NA other upstream 214763 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 1303231 69536400 ~ 69538276 (+)
G739708 NA other upstream 1836391 69004337 ~ 69005116 (+)
G739670 NA other upstream 1934542 68903365 ~ 68906965 (+)
G739648 NA other upstream 1982754 68858383 ~ 68858753 (+)
G742860 NA other downstream 850704 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 1697828 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 1789986 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2015510 72779485 ~ 72872336 (+)
G744696 NA other downstream 2017358 72862256 ~ 72864703 (+)

Expression


Co-expression Network