wnt9a (wnt9a)


Basic Information

Item Value
gene id wnt9a
gene name wnt9a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71907559 ~ 71934937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613613.2
TAATGGGAGGAGCGCAAATGTCCTCTCTCTATAAGAAGTGCCGAACGTACAACAAGGGATTTTATACAGCTACTCAGGAGAAACGAAATGATCTGCCCTGGAGCCGCAGCAAAATGCTGGATGGACACCTACTCCTGGGATGGTTATCGTTCACAGTTATAGTGTACCTTTTCAATTTGCCCGGACCGACAACAGCTTATTTCGGACTGACAGGTAATGAACCCCTGTCCATCCTACCGCTGAGCTCCCAACCCGAGGAGAACGTGGGCAGGGCCCACTACAAGCTGTGCGACCGGCTCAAACTGGAGAAAAAGCAGAGGCGGATGTGTCGACGAGACCCGGGTGTGGCCGAGACCCTCATGGAGGCCATCAGCATGAGCGCCCTGGAGTGCCAGTACCAGTTCCGCTTCGAGAGGTGGAACTGCTCTTTAGAGGGCCGCTACAGAGCCAACATTTTAAAGAGAGgTTTTAAGGAGACAGCCTTCCTGTATGCCGTCTCCTCAGCAGGCTTGACTCACGCCATGGCCAAGGCGTGTAGCGCCGGGCGGATGGAGCGTTGCACCTGTGATGAAGCACCAGACCTGGAGAACCGCAAGGCCTGGCAGTGGGGCGGCTGTGGAGACAACCTGAAGTACAGCAACAAGTTTGTCAAGGACTTCCTGGGCAAACGCTCCAACAAGGACCTGCGTGCCCGCGTGGACATGCACAACACTAATGTGGGCATGAAGGTGATCAAAGCCGGGGTAGAGACTACCTGCAAATGTCATGGCGTCTCAGGCTCCTGCACCGTCCAGACATGCTGGAGGCAGCTCTCGCCCTTCCATGAGATCGGCAAGCAGCTGAAACAGCGCTACGAGGCCTCTCTGAAGGTGGGCAGCTCCACCAACGAGGCCACGGGGGAGGGGGAAATCTCCCAGGCCCGGCCCCAGCAGCAGCCCTTACCAGGCCCCAGCAATGACCCAATCCCACGCACCATGGACCTGCTCCACATCGAGGACTCGCCCAGCTTCTGCCGGCCCAGCAAGTACTCGCCAGGCACCTCGGCCAGGAAGTGCTACAAGGACAAGAACTGCGATGCCATCTGCTGCGGCAGGGGCCACAATACCCAGAGCCGCGTGGTGACCCGGCCATGCCAGTGTCAGGTGCGCTGGTGCTGCTACGTCGAATGCAAGCAGTGCACGCAGAGAGAGGAGGTCTACACCTGTAAAGGGTAGGCCAGTCTTagaggagagagcaagacaaTGGAGTTGGAGGACCTTTATAAGCACTTTGAGGGATTTTCTGTCGTGTGGGTTTGGTTCTAATGCCCTGTGGCCCCAGCCAATGGGGGTTGGGGTTGCAGCAGGAGATTGGCCATGTCTGACAACCGGGTCAACACGTGTCTCATGCTTTCTGGTTGCAGAGTTAGAGCCTTGGATAAAGGCTACCTCGCCTATTCAACATCCAGTCAGATGTGTCAGTGAGAAAACGCAGCACTTGGCAGCTGTCTCCGGCTAGCATGCTGTTAATGAGGATCCAATAGAATGACTGTAATGGTAAAAGACTGGCTTTTGGGCCTTGCCCAATGTAGAAATGTGTGTGTTGGCGGCGAGTGAGGGTGCAGGGGAGTCAAATGACAACTCATATGGCAATCATGGCAACCATATTCTGAAACTGTTAAGAAGACAGGGTGTAAGATTTATTATACGCACACATATTTACACTCGCACACCAATGTGTGTATGCATATGTATGTAAATAAATTAAATTGTATTATAATGATATTATATACACTTGCCACTTCTCTGAATATGTTTAAACAAACCACTAACTacacaaatgtattgttgttTGTGTGTTCTCGCTCTCTTTTGCTTTATAATTTCTTTTGACAAGGCCCTTTGGAAAGCAGCACATTTGTGTCCTTTGTGTCTCTCTGTGGATCATTTATGGACCCTTTGGGACTACTCCTTCCCGAGGAGAGGAAACACGCTCATTTGTCTTTGATTCTTTTTCGCTAGAGTGAAATTGTTGGTGAATACATTTCTGAGTAcagaaattatatattttttgccagTAATTTTAGGCTACTTTTGGGCGAACTCAACTAATGTTCAGGGAATAACTGAAACCACTATACTTATTTAGAAAGAGTAAAAAGAAAAACTGAAAATCTGCATGTAATTGAAAGTTCAATGAGAGAATGGCCTTGCTTTTCTGAGTCTAGTGTCTATTACTGTCACCATGACAACAGGAGACCGACCACTTGACCAATAGAGAATGCATCTTCCAATCAGCTGACTAATGCTCTAAGTAATAGTAACCCAACTATGTCACCTTGCTTCTTGGTACTTAGTTAGCACTCTGTTTAAAAAGGAAAAGCCAATCTTGCTAGTAATACTACTATAAAGTAAAGAAAACAGCAAACTATGGGTACAGGAGAAATGTAACCCCTATTTCTATACATACACTCTCatatccttccttcctctctctagaGTGCACCATTTGATTGACAAGGATAAATGGTTGAGGTTGAAAATGAACAGTATGATGCTATGGAAACTAAAATCCATCTTGACATGTCTGCAAAATGGCTTCAAAATTAACACCCTGAGGCAAATGCGGTCTTTTACAGATAGTCCTGCTGAAGCTTAAGGTGTATTATGGTGACAAAATGTGTTTGCGACAACAAAGCAAATGTATGCTCTAGCTGTAGCCTATGCATTTTCTATCCATTGTTTGGGGCATAGCTAACAGAACTCCGTGACTGCAAAGGTACAATCTCCCTTTGTGTTGTTTTGACAGTAATTTTCTTTAAGGCAGGTTACCATTATGTTGTACAGTAAGATTTGTATGACTAACATTTAATATTGACTGGTGGCAAAGGCAGAGCCAACCCTGTAAACAGCTACAATAACTCGTCAGATGCAAAGTCATCTTTAGATTCCCTTTAGGTATACCGTCTTTGCCTTGTTTTAAGTGGGTGAGAATGAACTACTGAGTGAGGAACCCAACATTGTAAGATAGCCCCATTTACGCACTGAAGCCCCAGAAGCCCTTTATAATTTCCCTTTAAAGTATTTAAAGACCTTGTATTtatgaatatatacagtgcagATGTTTTTGTTTATTGTAAAAAGCAGTGGTTTATTCTCCTGTGGTATAGAGACAAGAATGAGGCACATGGTACAATCTCACAGACAATTAAAGAGGAAGTTGGTAGCAATAAGGAGGTTAGGACCAAGACATTTGATGCTGGGAAGGCAAgtggtaaaatataaaatataaggCTAAACCATGAATATGGAATACAATGCTGCTGTAAACTTTTGATTGTAAGTGATCATCAGTAAGTGAAAAACAAGTGCCAAACGAGTACCAAGTAAATAGCATGCCAATACCCTCGAAAATAGCTTTGACCACCGACTATGATAGATAGACTACAGTTCGCCCACAGTTTTAAATCAGTGACGCTCACAGGATTTCTATCTGATTTGACCCACCATGATTTATCCAGAAAAGGCAGCATGCTCTCAGAAGGGAGTCTAGCCTAACGAAGGTTGGTTGGTTCATCCTCTAGAGCTGAATTCCAAACATTTTGAAAATGAGCAGTCATGCCAAATAAagaatggtcaaaacatatacatAGAACTTTGCACGCTACATGGAAACCATAATGGCTCTGCTGAAAACCTGAGCATAAATGCCTGCTTCCCACAGCTTCCACACTCCCCTGCCCAAGACTGTGGTTCTCTACAGTGGTCATTTATT
>TU843460
GAGAAATGTAACCCCTATTTCTATACATACACTCTCatatccttccttcctctctctagaGTGCACCATTTGATTGACAAGGATAAATGGTTGAGGTTGAAAATGAACAGTATGATGCTATGGAAACTAAAATCCATCTTGACATGTCTGCAAAATGGCTTCAAAATTAACACCCTGAGGCAAATGCGGTCTTTTACAGATAGTCCTGCTGAAGCTTAAGGTGTATTATGGTGACAAAATGTGTTTGCGACAACAAAGCAAATGTATGCTCTAGCTGTAGCCTATGCATTTTCTATCCATTGTTTGGGGCATAGCTAACAGAACTCCGTGACTGCAAAGGTACAATCTCCCTTTGTGTTGTTTTGACAGTAATTTTCTTTAAGGCAGGTTACCATTATGTTGTACAGTAAGATTTGTATGACTAACATTTAATATTGACTGGTGGCAAAGGCAGAGCCAACCCTGTAAACAGCTACAATAACTCGTCAGATGCAAAGTCATCTTTAGATTCCCTTTAGGTATACCGTCTTTGCCTTGTTTTAAGTGGGTGAGAATGAACTACTGAGTGAGGAACCCAACATTGTAAGATAGCCCCATTTACGCACTGAAGCCCCAGAAGCCCTTTATAATTTCCCTTTAAAGTATTTAAAGACCTTGTATTtatgaatatatacagtgcagATGTTTTTGTTTATTGTAAAAAGCAGTGGTTTATTCTCCTGTGGTATAGAGACAAGAATGAGGCACATGGTACAATCTCACAGACAATTAAAGAGGAAGTTGGTAGCAATAAGGAGGTTAGGACCAAGACATTTGATGCTGGGAAGGCAAgtggtaaaatataaaatataaggCTAAACCATGAATATGGAATACAATGCTGCTGTAAACTTTTGATTGTAAGTGATCATCAGTAAGTGAAAAACAAGTGCCAAACGAGTACCAAGTAAATAGCATGCCAATACCCTCGAAAATAGCTTTGACCACCGACTATGATAGATAGACTACAGTTCGCCCACAGTTTTAAATCAGTGACGCTCACAGGATTTCTATCTGATTTGACCCACCATGATTTATCCAGAAAAGGCAGCATGCTCTCAGAAGGGAGTCTAGCCTAACGAAGGTTGGTTGGTTCATCCTCTAGAGCTGAATTCCAAACATTTTGAAAATGAGCAGTCATGCCAAATAAagaatggtcaaaacatatacatAGAACTTTGCACGCTACATGGAAACCATAATGGCTCTGCTGAAAACCTGAGCATAAATGCCTGCTTCCCACAGCTTCCACACTCCCCTGCCCAAGACTGTGGTTCTCTACAGTGGTCATTTATTGAATGGATACAAATGGTCAACAGAGTCATGGAGAGAGGAATACAGTATGCACATTGCATGTATTTTGTATGTTTTATATTCTACGTTTTTCAAGACAAAGGACGGCATCATACAATGGTTGTTCTTCAATGTCATTGTCTTAGTCCTTCATATTCTATTTTTGAACTCATAGCTCTGCACTGTGTAGTTGTCAGAGGATCATGtataaaaaaatctattttataggAAAAATGAAAATAACAGAAAGAtaaattattttaaaatatattatgAGCATGTGTTCAATGTAAATAACATTAAGTCAAAACTGATTTTATATACTTGTATTTTTTACTCAGTTTATTTTCTTGAGGCTTGTATGGGGTTTTGGCTTCTTTGCGGTGGAGGCTTCAAGAGACAGTGAATACTGTAAAGTCAGCATAATTGTTCTTAAAGATAACTCTAACATTTGCCGTTCCTAAGCACAAAACAAATCCTAACAAATTTAGAAAATCAACAATTCTCTTCCCCTTTTCAactgttttatatacagtacaacacatcgaAAGGCAACTCTAAAGGCTATTAAAGGGATCATGATCAGCTGTTTTATGTCATTGACATTGCACAATACTTACCAAGTATTTTTGTAGCATCCCGATTTGTAGCATGACCCATTTGTTTGAGGGGTTGGTGAGGGGTATATGGGTTCTGTCTGTACCCAGTAACATAGCCATCTGTGCAGATAAACACACTGACCAAACACAAGTAGTATTGGTGCGAACTCATTCAATTTTTGGTATACTCTGATGTTCTTGCAAAGGATCACAACAAATGATATTTAGAGGGTCACAATCACCGTGTACATTTTTGTTAGGATTTGTGCTGTGCTTgctaataacaaaacaaacatgtattacCCTTTGTGATAATACTATACCAACAAAGCTTTGTCCATGTTCACTTATTCATGTCTTATGGGAACGTAAATGATTTTCCTCTACCTCATGTGTATAGCTTGTAGGTATAAACAGATCACGAATGACTGGTAAGAATGTATTTAAGTTATTTAACATCTTTGTAAAAACAAAGGCAAG

Function

symbol description
wnt9a Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within hematopoietic stem cell differentiation; pharyngeal system development; and skeletal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including gut; head; nervous system; pectoral fin; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human WNT9A (Wnt family member 9A).

NR:

description
PREDICTED: protein Wnt-9a

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613613.2 False 3753 mRNA 0.46 4 71907559 71933861
TU843460 True 2411 lncRNA 0.37 1 71932527 71934937

Neighbor

gene id symbol gene type direction distance location
c8h1orf35 cssa14h1orf35 coding upstream 75003 71828037 ~ 71832556 (+)
LOC110530483 obscn coding upstream 89438 71727788 ~ 71818121 (+)
atg9b LOC106569346 coding upstream 225261 71659108 ~ 71682417 (+)
asic1c LOC106569349 coding upstream 267304 71480964 ~ 71640255 (+)
LOC110530474 LOC106569352 coding upstream 495263 71135382 ~ 71412296 (+)
LOC110530489 iba57 coding downstream 163531 72097392 ~ 72103866 (+)
LOC110530494 LOC106569334 coding downstream 212492 72146353 ~ 72155430 (+)
LOC110529137 LOC106569331 coding downstream 257306 72191167 ~ 72219447 (+)
LOC110530496 LOC100136504 coding downstream 407635 72341496 ~ 72345654 (+)
LOC110530498 LOC106569327 coding downstream 560184 72494045 ~ 72496970 (+)
G742904 NA non-coding upstream 63475 71843791 ~ 71844084 (+)
G742573 arf1 non-coding upstream 69795 71833627 ~ 71837764 (+)
G742860 NA non-coding upstream 191943 71695602 ~ 71715616 (+)
G742854 NA non-coding upstream 254125 71653206 ~ 71653434 (+)
G743613 NA non-coding downstream 3570 71937431 ~ 71937872 (+)
G743630 NA non-coding downstream 13830 71947691 ~ 71947980 (+)
G743631 NA non-coding downstream 14551 71948412 ~ 71948695 (+)
G743633 NA non-coding downstream 15222 71949083 ~ 71949294 (+)
G743647 NA non-coding downstream 25733 71959594 ~ 71960167 (+)
G742095 NA other upstream 1280815 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2369283 69536400 ~ 69538276 (+)
G739708 NA other upstream 2902443 69004337 ~ 69005116 (+)
G739670 NA other upstream 3000594 68903365 ~ 68906965 (+)
LOC110530976 LOC106569323 other downstream 608865 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 701023 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 926547 72779485 ~ 72872336 (+)
G744696 NA other downstream 928395 72862256 ~ 72864703 (+)
G744697 NA other downstream 933240 72867101 ~ 72868382 (+)

Expression


Co-expression Network