LOC110529137 (LOC106569331)


Basic Information

Item Value
gene id LOC110529137
gene name LOC106569331
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72191167 ~ 72219447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611273.2
aggagagaggacacccTCTTTCCTCTTCAGCACCCCTCTCTGACCATCAATCATCCAGGGCCATTGTGGTCCTATCCAGGGTAGCCTGCAGCGCAACCACACagcccagccacccagccaggcaggcagaagagaggagaggagaggagagagggggcaacGAGCTGTAGCCTTCAGGGAGAAAGGAAAGTGGAAAATAATGGCAGCCGGGGAACGGCCTtcttcctgtcctcttctccAGCCAGTGATGCTGGGCTTGGAGGCAGCGCTGCTCTCCTTCTGCATCTCCACTGTATTCTCCCAGGTCCCAGACCCAGAGCTTTTACCGACAGATCCCCCAAAGAAGCCAGACCCAGTCACTTCAGAAACAGTCGTGTTCTGGGGACTGCGGTTATGGCAGGTTATTGGCATCTTCTCTATGTTTATTCTAGCAGTCATCATAACCCTATGCTGCATCTTCAAATGCCGTATCCCCAGGACAAAGAAGGAGATTGAGGCGCGACATGCTCAGAGAGTAGCAGCTAAGGACTACGCCAACACACTGGAGACAGTGCCTCCTCTCAACGAGCTCACAGAGATCCCAGGAGCGTTCCTGGACACTGCATCCCTCCCAACGGTCTCTGAGCAGCAGCCAGCTCCCAGTGGTGAGAGAGGAGGTGGTGCTCACTGGTTCCCTCACTCAGCCTGAGACTGGATgactttcctccctccttcttaTCACTCAGCCTGAGACTGGATTACGTCCATCCCTCCGTTTCCTACTTCTTATTGTTTCTTCTCAACTTCCCTCTCTCCACATTCCTATTTATGTTCTGACAAAATGGGAAATCCACTAGAGGGAATATTGGAGCATGAAGCTCAGCATTCAGTAATTCACAAAAAAGGAATGAATAGCTGAATAGAATAGTTCATTGAGTAACTCCGCGTTAGTCATTACTTCCCAGAAAGAATGACTTGGAGATTGTTGAGAATATTGCCGGCTGAAGAGTTACAATTGTAGGTGTTAAGTACTTGAAATGGGTTTTCACTATTTCCTCATCTGCTCTTTGTTGATATACTCATCCTTGTCGATcacacatttttatattttttttaattttaccatcatttaactaggcaagtcagttaaaaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaaccttgtcagctcgggggtttgaacgctctaaccactaggctaccctgtacATTGATTGTACATTGGACACAGAACTGCAAGTTCAGTATCTGGTAGCCAACTGTGGATTATGAAAAAATGTAGATTAATCTTTAAGGCTTCTGTCAGTGATGTTGCATGTCTATTCCTTGTCATTCGTTGtttttccttctcttcctctgactCAATCTGTAAGCTTGGCTTTGAATAA

Function

NR:

description
transmembrane inner ear expressed protein-like

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0007605 sensory perception of sound biological_process
GO:0048884 neuromast development biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23907 TMIE; transmembrane inner ear expressed protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611273.2 True 1423 mRNA 0.47 4 72191167 72219447

Neighbor

gene id symbol gene type direction distance location
LOC110530494 LOC106569334 coding upstream 35737 72146353 ~ 72155430 (+)
LOC110530489 iba57 coding upstream 88647 72097392 ~ 72103866 (+)
wnt9a wnt9a coding upstream 257306 71907559 ~ 71934937 (+)
c8h1orf35 cssa14h1orf35 coding upstream 358611 71828037 ~ 71832556 (+)
LOC110530483 obscn coding upstream 373046 71727788 ~ 71818121 (+)
LOC110530496 LOC100136504 coding downstream 122049 72341496 ~ 72345654 (+)
LOC110530498 LOC106569327 coding downstream 274598 72494045 ~ 72496970 (+)
LOC118965654 NA coding downstream 281862 72501309 ~ 72501364 (+)
LOC110530499 aqp1 coding downstream 288251 72507698 ~ 72510508 (+)
LOC110530976 LOC106569323 coding downstream 322608 72542055 ~ 72555556 (+)
G743843 NA non-coding upstream 4120 72186764 ~ 72187047 (+)
G743818 NA non-coding upstream 44077 72146875 ~ 72147090 (+)
G743815 NA non-coding upstream 47289 72143583 ~ 72143878 (+)
G743813 NA non-coding upstream 50191 72140331 ~ 72140976 (+)
G744006 NA non-coding downstream 19840 72239287 ~ 72239992 (+)
G744017 NA non-coding downstream 32265 72251712 ~ 72252029 (+)
G744128 NA non-coding downstream 104720 72324167 ~ 72324901 (+)
G744148 NA non-coding downstream 131393 72350840 ~ 72353262 (+)
G744149 NA non-coding downstream 135366 72354813 ~ 72355257 (+)
G742860 NA other upstream 475551 71695602 ~ 71715616 (+)
G742095 NA other upstream 1564423 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2652891 69536400 ~ 69538276 (+)
G739708 NA other upstream 3186051 69004337 ~ 69005116 (+)
G739670 NA other upstream 3284202 68903365 ~ 68906965 (+)
LOC110530502 LOC106569321 other downstream 415437 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 640961 72779485 ~ 72872336 (+)
G744696 NA other downstream 642809 72862256 ~ 72864703 (+)
G744697 NA other downstream 647654 72867101 ~ 72868382 (+)

Expression


Co-expression Network