LOC110530496 (LOC100136504)


Basic Information

Item Value
gene id LOC110530496
gene name LOC100136504
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72341496 ~ 72345654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613635.2
TATAGTACACTCACTATTGTTGGCAGCTCTGCGGGCCAGGGAGGGGGTGAGGATGACACCTGGACTGACAGAATAAAGGGCCCCAGCCCCTACCCAAAGTGTTACCCTCTGCTGTGTTGTTCCTCCTGTGGCTCCTGTGCTTAGTTGTGCATCTCTGTTCTCACAATGGCGCCCAAGAAGAAGGAAGAGCCCAAAGAAGCACCCAAACCCAAGGCCCCAGAGCCTGAGCCCGTCAAGATCCCGGAGTTTAACCCTGCAGAAGTTGTGCTTGAATTCACCCCCGAGCAAATTGAAGATTTCAAGGATGCTTTCCAGCTGTTCGACAGGACACCACTCAATGAGATGAAGATCACGTACGGACAGTGTGGTGATGTGATCAGGGCACTGGGGCAGAACCCCACCAACGCAGAAATCATGTACGTCCTTGGAAAGCCCAAGCCTGAAGAAATGGCGACAAAGATGCTGGACTTCGACAGCTTCCTGCCAATCCACCAACACATTTGCAAAGCCAAGGACCGCGGCACATATGAGGACTTTGTTGAGGGACTGAGGGTGTTCGACAAACTGGGCGATGGCACAGTCATGGGCGCTGAGCTCAGGCACGTCCTGGCATCACTGGGTGAAAAGATGAAGGAGGATGAGGTTGAGCAGCTCATGACAAACCAGGAGGACGCCAACGGCTGTGTAAACTACGAAGCTTTTGTAAAACACGTCATGGCATCTTAAAAAGGCTGCCACTGCCGAGACACCTGATAGTTGAAGACAGATGATTGTTCATATGTTTATGTAACGTCCACACCATGCCTCTCATCTCATGTGTTCATCCCTATGTGCCCAGTTGGATTGCTATTCCATCATGTGACAGGACCGTTCAACTAACTGTTCATTGTTTTTATCGTTCCCCTTCATGTTGACTCAAATAACAAATGTTATTGTATATCCCCACTGTTCATTTGTGGATCAAAACTTGTAATTAAACATAATGATTCATTA

Function

NR:

description
myosin light chain 1, cardiac muscle-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12749 MYL3; myosin light chain 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613635.2 True 993 mRNA 0.49 6 72341496 72345654

Neighbor

gene id symbol gene type direction distance location
LOC110529137 LOC106569331 coding upstream 122049 72191167 ~ 72219447 (+)
LOC110530494 LOC106569334 coding upstream 186066 72146353 ~ 72155430 (+)
LOC110530489 iba57 coding upstream 238976 72097392 ~ 72103866 (+)
wnt9a wnt9a coding upstream 407635 71907559 ~ 71934937 (+)
c8h1orf35 cssa14h1orf35 coding upstream 508940 71828037 ~ 71832556 (+)
LOC110530498 LOC106569327 coding downstream 148391 72494045 ~ 72496970 (+)
LOC118965654 NA coding downstream 155655 72501309 ~ 72501364 (+)
LOC110530499 aqp1 coding downstream 162044 72507698 ~ 72510508 (+)
LOC110530976 LOC106569323 coding downstream 196401 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 coding downstream 288584 72634238 ~ 72714065 (+)
G744128 NA non-coding upstream 16595 72324167 ~ 72324901 (+)
G744017 NA non-coding upstream 89467 72251712 ~ 72252029 (+)
G744006 NA non-coding upstream 101504 72239287 ~ 72239992 (+)
G743860 NA non-coding upstream 130660 72210503 ~ 72210836 (+)
G743859 NA non-coding upstream 131659 72209637 ~ 72209837 (+)
G744148 NA non-coding downstream 5186 72350840 ~ 72353262 (+)
G744149 NA non-coding downstream 9159 72354813 ~ 72355257 (+)
G744152 NA non-coding downstream 11505 72357159 ~ 72357436 (+)
G744264 NA non-coding downstream 165732 72511386 ~ 72511590 (+)
G742860 NA other upstream 625880 71695602 ~ 71715616 (+)
G742095 NA other upstream 1714752 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2803220 69536400 ~ 69538276 (+)
G739708 NA other upstream 3336380 69004337 ~ 69005116 (+)
G739670 NA other upstream 3434531 68903365 ~ 68906965 (+)
LOC110530507 LOC106569317 other downstream 514754 72779485 ~ 72872336 (+)
G744696 NA other downstream 516602 72862256 ~ 72864703 (+)
G744697 NA other downstream 521447 72867101 ~ 72868382 (+)

Expression


Co-expression Network