LOC110530498 (LOC106569327)


Basic Information

Item Value
gene id LOC110530498
gene name LOC106569327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72494045 ~ 72496970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613638.2
AGCCTGTTGATGTTGTTTGGGAGTTCCACTGACACCACTCTACATTATCTCAGATAAGACCACCATACGTCCAGGCTGCAGCCAAGATGAGAGAGTTCAAGAGCAAGGCATTCTGGAGGGCTGTACTAGCCGAGCTTGTTGGGATGACCATGTTCATATTTCTCAGCATCTCAGCTGCTATTGGGAACTCAAACAACACCGCTCCTGACCAGGAGGTGAAGGTTTCTCTGACCTTTGGTCTGGCCATCGCCACTCTGGCCCAGAGTTTGGGCCACATCAGTGGAGCCCACCTGAACCCAGCTGTGACACTGGGCATGCTGGCCAGCTGCCAGATCAGCGTGTTCAAGGGGATGATGTACATAGTGGCTCAGATGCTGGGCTCTGCTCTGGCCAGTGCTATTGTCTACGGAACCCGGCCAGAGGCAAATACTGCACTGGGGGTCAATGCTCTAAATGGTGTCAGTGCCAGCCAAGGCGTTGGCATCGAGCTCCTGGCTACCTTCCAGCTGGTCCTGTGTGTCATAGCAGTAACTGATAAAAGGCGGCGTGATATCACCGGCTCTGCCCCCCTGGCCATCGGGCTCTCTGTCGCTCTGGGACACTTGGCAGCCATCAGCTACACAGGCTGTGGTATCAACCCGGCCCGATCCTTTGGACCAGCTTTGATCATGAATGATTATACAAATCACTGGGTGTACTGGGTGGGGCCAATGACTGGAGGTGTGGCAGCTGCTCTGGTCTATGACTTCCTCCTGTACCCCAAATCTGAGGACTTCCCTGAACGTATGAAGGTCCTTGTTAGTGGCCCGGTGGGAGACTATAATGTTAATGGTGAGGAGTCTGCAGCTGTGGAAATGTCATCAACAAAGTAGTGTTGTCATAGCAACACCATATAGTGTATAGGACTTTAGATTgtctacctacagtacagtctaccTACAGTCTACCTACTCCTGTAAAGCATTGACATTTCCTTTAGAATGGCAGCAGTTGAATTGTTATTTCAAAATAATGATAAAGAATTTCAAATAAGAGGGGCATTTTTATTTTGTTGTGAAGTGTTAGGCCTGTTTCATTGAAAATCACACTACTGAACTGCCGATTTAGTAGACAAATTGTCACTTGactatcacaggaggttggtggcaccttaattggggaggacgggctcgtggtaatggctggaccgaaatgagtggaatggtatcaaatacatcaaacgaatggtttccatgtgtttgataccatacCATTTTCTcttttccagccattattatgagtcgtcctcccctccGCAGCAGCTTCTACTGTTGAGTATTCACTTCAATTTCTAAACGTCTTTAACAAGAGTTGTTGGAACATCTTGCTCTTTGTTCAAATATTTCCCATATCAGTATTCTATATAGAGCTATTTGTTTTTGTATATTTTCTATGTACCTGTTTATGGAATAACTTTTTATTTCTTGATGTATATGTATTTCTGTGTGCACTCTTGAATTGTATTTCACTTTTGTACGTAAATAAAACACCAGATGTTAACAGAC

Function

NR:

description
aquaporin FA-CHIP-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K09864 AQP1; aquaporin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613638.2 True 1544 mRNA 0.46 4 72494045 72496970

Neighbor

gene id symbol gene type direction distance location
LOC110530496 LOC100136504 coding upstream 148391 72341496 ~ 72345654 (+)
LOC110529137 LOC106569331 coding upstream 274598 72191167 ~ 72219447 (+)
LOC110530494 LOC106569334 coding upstream 338615 72146353 ~ 72155430 (+)
LOC110530489 iba57 coding upstream 391525 72097392 ~ 72103866 (+)
wnt9a wnt9a coding upstream 560184 71907559 ~ 71934937 (+)
LOC118965654 NA coding downstream 4339 72501309 ~ 72501364 (+)
LOC110530499 aqp1 coding downstream 10728 72507698 ~ 72510508 (+)
LOC110530976 LOC106569323 coding downstream 45085 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 coding downstream 137268 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 coding downstream 282515 72779485 ~ 72872336 (+)
G744152 NA non-coding upstream 136609 72357159 ~ 72357436 (+)
G744149 NA non-coding upstream 138788 72354813 ~ 72355257 (+)
G744148 NA non-coding upstream 140783 72350840 ~ 72353262 (+)
G744128 NA non-coding upstream 169144 72324167 ~ 72324901 (+)
G744017 NA non-coding upstream 242016 72251712 ~ 72252029 (+)
G744264 NA non-coding downstream 14416 72511386 ~ 72511590 (+)
G744267 NA non-coding downstream 15896 72512866 ~ 72513246 (+)
G744625 NA non-coding downstream 232738 72729708 ~ 72730086 (+)
G742860 NA other upstream 778429 71695602 ~ 71715616 (+)
G742095 NA other upstream 1867301 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2955769 69536400 ~ 69538276 (+)
G739708 NA other upstream 3488929 69004337 ~ 69005116 (+)
G739670 NA other upstream 3587080 68903365 ~ 68906965 (+)
G744696 NA other downstream 365286 72862256 ~ 72864703 (+)
G744697 NA other downstream 370131 72867101 ~ 72868382 (+)

Expression


Co-expression Network