LOC110530540 (LOC106569403)


Basic Information

Item Value
gene id LOC110530540
gene name LOC106569403
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73909778 ~ 73917998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613706.2
TGACTGCTACCTCTGCGCGATGAAGTTTGGAGCGGCGCCGACCGGCCATACTGACAGACGTGGCTGGAAATTACTATATTTTTTTTGCAGAACATTTTCTGTGAGTAAATGTATTGAACCAATTACGAGGTTGGCGCAAATGATTTTCTCCGAAGTTGGACTAATGGACAATCCTGCTACTGGCTGTCTAATCTGAAATCGACCACATATGTTCCTAAAACGACTCGCCATTATGATCCTTTCACTCTGGTGCAAGTAAAAGTTGTATTTCTCACGCATCGCAAGACAGGGAAAGATACCTCACAACAAGACGGTTTGCAATATAAACGTTTGGAACGGGATGTTTTATCCCTCTGAAGTCTTATTCTACATGGATCAAGCACCTCCAGCTCTCCCTCCCAGGTCAGCCAAACCTATTACCTCCTTCATGAACGACAACTGCCTAAGGGAAGCCCCAGTATATCCCCTGCAGGATGCCGAGTGGTACTGGGGAGACATTTCCAGGGAGGAAGTCAACGAGAAGCTCCGCGACACACCTGATGGTTCCTTCCTGGTTCGTGACGCTTCCACTAAGATACAAGGAGACTTCACGCTAACGCTGAGAAAAGACGGGCACAGCAAGCTGATTAAGATCTACCACCGTGAGGGGAAGTATGGCTTTTCAGAGCCCCTGACCTTCTGCTCTGTAGTGGAGCTCATCTGGCACTACCAGCACCATCCTCTGGTGGAATACAACGCTGTACTGGACGTCATGCTCACACACCCTGTTTCCCGCTTCCAACAGGATGAGCAGGTGAAAGTGGACAGTGTTGATGTTGCCGGGAGGAAGCTACAGGAGTACCACAGTCAGTACCAGGAGAAGAGTCAACAGTTTGACTGTCTGTACGAGGCCTACACTAAAACCTCACAGGAGATCCAGATGAAGAGAACTGCGATAGAGGCCTTTAACGAGACCATGCTGATCTTCGAGGAGCAGTGTCGCGAGCAGGAGCGTTATGGGGAGGAGTGTGAGAGGAGCATTCGATCTAAGGGAACAGAGAAGGACTTGGAGAGATTCCTGATGAACTATGAGAAGCTAAAGTCTCGGCTGGGGGAGATCTATGACAGTAAGGTCCATCTGGAACAGGACCTGAGGACCCAGGTCCAggactacagagagacagacaggaggatcAACAGCCTCAGGCCTGACCTCATAGAGCTACGCAACATCAGAGACGAGTACCTCAATTGGCTGAATCACGAAGGTGTGCAACAGAAACGCATTAACGATTGGCTGGGGTTCCAAGACAATAGCAGTGACAACACCTACGTGTTGaagggtgagagtgagagactggCGCACCATGACGAGGGGAGCTGGTTCGTGGGCGAGCTGAGCAGGACCCAGGCTGAGGAGATGCTGATGGACAAACCCACCGGAACCTTCCTGATTCGCGAGAGCAGCAAGCAGGGTTGCTACGCCTGTTCCGTAGTTGTTAATGTAGAAGTGAAGCATTGCATGATTTATAGCACGCCACGTGGCTATGGCTTTGCTGAGCCCTACGACCTCCACTGCTCTCTGAAGGAGCTCGTTCTGCACTATCGCCTCAACTCCCTGGCACAGCACAACCAGGCCCTGGACGTCCGGCTGGAGCACCCTGTCCACGTCACTCCTGTCTCGTCAGCCTTCCCACACACAGCCACAGAGGACTGCCTGCTACAACAGACGGAGGAACACCACCTTCTACAGACTCAAACTAAACTACCTGCTGGACTCCCTGCAGCCGCTCCGGAGATGTAGATTAGTCAGCTGTGGGACGTGTTTGCGTACTGTAGCTATCCTACGAGGACTACTTGAGGGTGGACTTGTTTGCGTACTGTAGCTATCCTACGAGGACTACTTGAGGGCGGACGTGTTTGTGTACTGTAGCAACTTGAGGGCGGACATGTTTGCGTACTGAAGCTATCCTACGAGGACAACTTGAGGGCGTTCTTTTCTCAAAGAAGAATGTGTGAAATTTGCACTAGGATGATTCCAACGGATTGGTGAATGTAATTTCACTTAATTGGAACTTTGACCGGAACTTGAATGTCAGCTAGGactttgttttttataagattcTGTTtgctatttgttttttttttgtacccATTTTTCACCTTTTTTTCATGGGATTTGATTTGTTTTAGTGGGCCTGGTCATCCGGGAGATGACTGACTACATATACTATGTCACAATATGTTGGTATTTGTCAGGTGCTGTTTTTTTATTTGGACTTCTAGGGTCCCATTTTGACAACACAAGTACTGGTGCTAATGTAAAATGAGATTGTAATACACCCAATACCTTGGAATTTAGAATTTATTTCAAACATTTTAATTGTTGTGATGTCCATGCACGGAAGATCCTAAAAGTGGAATTAGAATATAATGGTACAGAAAAACGAGATGGCTGACTCAGTGGCATAGCTAGCTGTGGTACACATACCAAACATGTTCTGGGTATTTCAGTACATAGTCATGCAAATATAGGAACTGATGTGGCGCATCGTGTCAGTAgcgctgttttttttgttgtcaaaatATAACCCAGTTACCAGttgatatgtactgtatgtagcataAACAATTTTCTGGATATCCTTCGAATGACATTTTCCATATTGTATCCAATAACCAAAGCACTTGCTATTAGTGATAAAAGTATATATTCCGACCAGAATATTACATTTATGGTGATGGCGGAAAACACACCACACGTGCTTGATCAAAACATAAATTgaagtactgtatattatattctGTTATTCAAAGTATAAGCTTTTTGTATTTTTTGATATGATATATTTTCTGAAATATGCCACAGAAGATGAAAGCTTGAGGAAAGTGCAATCCAACAGTATTTGTAATTTTAGAAATTCATTATTATAATTATGGGGGGTCATCAGCTTTTGCCACAGAAATGCACTAACTTTTAATTGGTGGTGTTATTCATCTGATGACGTGACCTTTTAAGAACATTGTGTGAACTGCCAGAGATGCGGAAGTGTACATTCTGTCTCTATTACTTGAACTGTGGCATTGAGCGGTTAATAAGAGCGATTAATATTTCCTCAAGACATGTAGGCCTACATAGCTTAAGGAAAATAATACATTTTGTTCTTGGCACATATGTCAAGTTTGAGGACAAAAGACACTCTGTATTGAGATACTGTAAAACGTTTGTGGTTGGTTGGATGGAGGGTGTCTTTCTTAAAAACTAGACAGGAGCATTGAGGAAACTCCTGGGACGACTTTAAGCAATGTGAGATTCTTAATTTTTCTTGCTGAAGACAATAAACTGATGAGGGTTTTGTTGAA

Function

NR:

description
phosphatidylinositol 3-kinase regulatory subunit gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613706.2 True 3342 mRNA 0.45 7 73909778 73917998

Neighbor

gene id symbol gene type direction distance location
LOC110530535 LOC106569400 coding upstream 47572 73844648 ~ 73862206 (+)
LOC110530534 LOC106569406 coding upstream 72403 73834830 ~ 73837375 (+)
si:ch1073-82l19.1 LOC106569408 coding upstream 115958 73770882 ~ 73793820 (+)
LOC110530531 LOC106569411 coding upstream 148046 73754013 ~ 73761732 (+)
LOC110530532 LOC106569413 coding upstream 173080 73734827 ~ 73736698 (+)
LOC110530541 ipp coding downstream 6311 73924309 ~ 73931497 (+)
LOC110530543 gpbl1 coding downstream 22096 73940094 ~ 73951207 (+)
prdx1 nkef coding downstream 56658 73974656 ~ 73981179 (+)
zte38 LOC106569397 coding downstream 64710 73982708 ~ 73991211 (+)
LOC110530564 LOC106569383 coding downstream 310113 74228111 ~ 74230113 (+)
G745568 NA non-coding upstream 17737 73891638 ~ 73892041 (+)
G745557 NA non-coding upstream 27328 73870430 ~ 73882450 (+)
G745534 NA non-coding upstream 98356 73809963 ~ 73811422 (+)
G745501 NA non-coding upstream 155913 73753604 ~ 73753865 (+)
G745594 NA non-coding downstream 15497 73933495 ~ 73933754 (+)
G745595 NA non-coding downstream 17310 73935308 ~ 73935597 (+)
G745589 NA non-coding downstream 18511 73936509 ~ 73936859 (+)
G745590 NA non-coding downstream 18950 73936948 ~ 73937684 (+)
G745585 NA non-coding downstream 20342 73938340 ~ 73939164 (+)
G745489 NA other upstream 189128 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 314540 73593637 ~ 73595238 (+)
G745083 NA other upstream 659282 73249424 ~ 73250496 (+)
G744697 NA other upstream 1041396 72867101 ~ 72868382 (+)
G744696 NA other upstream 1045075 72862256 ~ 72864703 (+)
G746052 NA other downstream 1034687 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 1096646 75014644 ~ 75033896 (+)
G746936 NA other downstream 1409774 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1432210 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1461504 75379450 ~ 75383243 (+)

Expression


Co-expression Network