LOC110530541 (ipp)


Basic Information

Item Value
gene id LOC110530541
gene name ipp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73924309 ~ 73931497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613709.2
CTTCCACTTAAGACCGTACAGTCGATCCAGAAAAAAGATTGACAGATCTGTTTGCGGAAGTTGCCTGCTGGAAATTAACTAACTTGAAAACTTAATGTGGACTAAAAAGCAACTGTACAGTCAGATGATGTGTCCACTTGAAGAGTCCTGCACCATGAAGCTGCAGTAAGGGTAGACCGTGTCTGTGACACCGCCCCCGTCTCTTTCCCTCCCTGTGACTGAGCCACCATGTCCTCGGTGATGTTTCCACCTCGCTCCCCACCTGGGAGCAGTGGCTCTGGCGGCGGTGACATACCTGCAACTAGTGTGACGACCCAGTCCGCTGAGCAGGCTCTGTTTGCATCGGACCGCTACGCCCGACTCATCCTGGCCCAGATGAACAAGATGCGCCTCCGGACAGATTTCTGTGACGTAAGGCTGCGGCTGGGAGGCCGTGTGTTCAGTGTCCACAAGCTGGTCCTGGCTGCAAGCAGCCCCTACTTCTCCGCTCTCTTCTCTGGGGGGATGAGCGAGGCAGACAAGGAAGAGGTCCAGATCCTGGGGGTGGAGGCACCAGTGTTTGAGGTCCTGCTGGAGTTCATATACACAGGTATGATTAACGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGCAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGGGCCACATGGACCCGTCCAACTGTGTGGGGGTATACCAGTTCCTTGAGCAGATCGCCTGCATGGACATGCTGGCGTTCACTGAGAACTACATCCAGGTCCACTTTCTGGAGGTGTGTGTGTCGGACGAGTTCTGGGGCCTGTCCAAGGGCCAGCTGGTGAAGCTGCTGCGGAGCGAGGAGCTGCGAATCGAGGATGAGTACCAGGTGTTCACGGCGGCCATGGACTGGGTCCTACAGGACGTGACCAAAAGGAAGAAGCATGTGGTGGAGgtgctggacccagtcaggtTCCCCCTGCTCTCCCCACAGAGACTCTTCAAGTACATCGAAGGCATTTCTGACTTCAGCCTGCGGGTGGCGCTGCAGACACTGCTGAGGGAATACACAGAGGTCAGCAAGTCTCCCAAAGAGAATAAGGTGTACAGCCTGTTACAGCCAGCCAAGATGAGGCCAAGGAGAAAGGCCAGGAAATACCTCTATGCCATAGGAGGCTACACTCGGCTGCAGGGCGGCCGTTGGAGTGACAGCCGGGCCCTGAGCTGCGTGGAACGCTTTGACTCATTCAGCCAGTACTGGACCACTGTGTCCTCCCTGCACCAGGCCCGTAGCGGGCTGGGAGTGGCTGTGCTGGAGGGCATGATCTATGTCGTTGGAGGGGAGAAGGACTCCATGATATTTGACTGCACAGAGAGATACGACCCGGTGACTAAGCAGTGGGCAGCTGTGGCCTCTCTCAATTTCCCTCGATGTGGTGTCGGGGTCTGCCCCTGTCACGGGGCTCTCTACGCACTGGGTGGTTGGGTTGGATCAGAGATAGGGAAGACAATGGAGCGCTATGACCCGACAGAGAATAAGTGGGAGATCATTGGAAGCATGGCAGTGCCTCGGTATTACTTTGGATGTTGCGAGTTACAGGGCTTCATCTATGTGATCGGGGGGATTAGTGATGAGGGGATGGAGCTGCGTTCTGCAGAGGTGTACGACCCCATTTCCCGGCGCTGGAGTGCCCTGCCCGTCATGGTGACCCGGCGGGCCTACGTGGGCGTGGCCTGCCTCAACAACTGCATCTACGCTGTGGGGGGCTGGAACGAGGCACTGGGCTCCCTGGAGACGGTAGAGAAATACTGCCCTGAAGAGGAGAAATGGGTGGAGGTGGCCCCCATGGCAGTGGCGAGGGCCGGGGTGTCCGTGTCAGCCGTTAACGGACTACTGTACGCCGTGGGGGGACGGGCCTCCAGCAGAGACTTCTCGGCCCCCGTGACGGTGGACTCTGTGGAGATTTACGACCCCCACCTGGACACCTGGACGGAGATTGGCAACATGATCACCAGTCGCTGTGACGGGGGCGTGGCCGTGCTCTGAGATTGAGCCGTAGTAGAACCAAGGGAGGTGGTTCGGTGAACCGCGAAACCTGATGAGTAGCCGTTTTCTTTTTTTCTGGAACAAATCTCATTCTCAGACGAGAATACGGTTTTATGTCTGGCACCGTGAGATTAcatgatgagtaaccttgctTGAGATCTGGATACTTGAGTTAGCTACAGAGCTATAAATGCCAAAATGGCTTTCGCTTCGGGGCAATTCCATGGTATCAGaagactcagatttttcactttaaaatgtatgccaaacaaatcaaatcatattgtatttgtcacatgcgccaaatacaacaggtgtagaccttcgtgaaatgcttacttacgggcccttaaccaac
>XM_021613708.2
ACCGTACAGTCGATCCAGAAAAAAGATTGACAGATCTGTTTGCGGAAGTTGCCTGCTGGAAATTAACTAACTTGAAAACTTAATGTGGACTAAAAAGCAACTGTACAGGGCGACGGTACACTAGTAGCCAGACTAGTGGGACACACCAATCCATCTGATGATGCTGCTATACTTTTTATTTTGGTCTGGTTGCTAGTAAGTGAGAGTCAGATGATGTGTCCACTTGAAGAGTCCTGCACCATGAAGCTGCAGTAAGGGTAGACCGTGTCTGTGACACCGCCCCCGTCTCTTTCCCTCCCTGTGACTGAGCCACCATGTCCTCGGTGATGTTTCCACCTCGCTCCCCACCTGGGAGCAGTGGCTCTGGCGGCGGTGACATACCTGCAACTAGTGTGACGACCCAGTCCGCTGAGCAGGCTCTGTTTGCATCGGACCGCTACGCCCGACTCATCCTGGCCCAGATGAACAAGATGCGCCTCCGGACAGATTTCTGTGACGTAAGGCTGCGGCTGGGAGGCCGTGTGTTCAGTGTCCACAAGCTGGTCCTGGCTGCAAGCAGCCCCTACTTCTCCGCTCTCTTCTCTGGGGGGATGAGCGAGGCAGACAAGGAAGAGGTCCAGATCCTGGGGGTGGAGGCACCAGTGTTTGAGGTCCTGCTGGAGTTCATATACACAGGTATGATTAACGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGCAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGGGCCACATGGACCCGTCCAACTGTGTGGGGGTATACCAGTTCCTTGAGCAGATCGCCTGCATGGACATGCTGGCGTTCACTGAGAACTACATCCAGGTCCACTTTCTGGAGGTGTGTGTGTCGGACGAGTTCTGGGGCCTGTCCAAGGGCCAGCTGGTGAAGCTGCTGCGGAGCGAGGAGCTGCGAATCGAGGATGAGTACCAGGTGTTCACGGCGGCCATGGACTGGGTCCTACAGGACGTGACCAAAAGGAAGAAGCATGTGGTGGAGgtgctggacccagtcaggtTCCCCCTGCTCTCCCCACAGAGACTCTTCAAGTACATCGAAGGCATTTCTGACTTCAGCCTGCGGGTGGCGCTGCAGACACTGCTGAGGGAATACACAGAGGTCAGCAAGTCTCCCAAAGAGAATAAGGTGTACAGCCTGTTACAGCCAGCCAAGATGAGGCCAAGGAGAAAGGCCAGGAAATACCTCTATGCCATAGGAGGCTACACTCGGCTGCAGGGCGGCCGTTGGAGTGACAGCCGGGCCCTGAGCTGCGTGGAACGCTTTGACTCATTCAGCCAGTACTGGACCACTGTGTCCTCCCTGCACCAGGCCCGTAGCGGGCTGGGAGTGGCTGTGCTGGAGGGCATGATCTATGTCGTTGGAGGGGAGAAGGACTCCATGATATTTGACTGCACAGAGAGATACGACCCGGTGACTAAGCAGTGGGCAGCTGTGGCCTCTCTCAATTTCCCTCGATGTGGTGTCGGGGTCTGCCCCTGTCACGGGGCTCTCTACGCACTGGGTGGTTGGGTTGGATCAGAGATAGGGAAGACAATGGAGCGCTATGACCCGACAGAGAATAAGTGGGAGATCATTGGAAGCATGGCAGTGCCTCGGTATTACTTTGGATGTTGCGAGTTACAGGGCTTCATCTATGTGATCGGGGGGATTAGTGATGAGGGGATGGAGCTGCGTTCTGCAGAGGTGTACGACCCCATTTCCCGGCGCTGGAGTGCCCTGCCCGTCATGGTGACCCGGCGGGCCTACGTGGGCGTGGCCTGCCTCAACAACTGCATCTACGCTGTGGGGGGCTGGAACGAGGCACTGGGCTCCCTGGAGACGGTAGAGAAATACTGCCCTGAAGAGGAGAAATGGGTGGAGGTGGCCCCCATGGCAGTGGCGAGGGCCGGGGTGTCCGTGTCAGCCGTTAACGGACTACTGTACGCCGTGGGGGGACGGGCCTCCAGCAGAGACTTCTCGGCCCCCGTGACGGTGGACTCTGTGGAGATTTACGACCCCCACCTGGACACCTGGACGGAGATTGGCAACATGATCACCAGTCGCTGTGACGGGGGCGTGGCCGTGCTCTGAGATTGAGCCGTAGTAGAACCAAGGGAGGTGGTTCGGTGAACCGCGAAACCTGATGAGTAGCCGTTTTCTTTTTTTCTGGAACAAATCTCATTCTCAGACGAGAATACGGTTTTATGTCTGGCACCGTGAGATTAcatgatgagtaaccttgctTGAGATCTGGATACTTGAGTTAGCTACAGAGCTATAAATGCCAAAATGGCTTTCGCTTCGGGGCAATTCCATGGTATCAGaagactcagatttttcactttaaaatgtatgccaaacaaatcaaatcatattgtatttgtcacatgcgccaaatacaacaggtgtagaccttcgtgaaatgcttacttacgggcccttaaccaac

Function

symbol description
ipp Predicted to enable actin binding activity. Orthologous to human IPP (intracisternal A particle-promoted polypeptide).

NR:

description
actin-binding protein IPP isoform X1

GO: NA

KEGG:

id description
K13956 IPP, KLHL27; actin-binding protein IPP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613709.2 False 2410 mRNA 0.55 10 73924309 73931497
XM_021613708.2 True 2496 mRNA 0.55 11 73924321 73931497

Neighbor

gene id symbol gene type direction distance location
LOC110530540 LOC106569403 coding upstream 6311 73909778 ~ 73917998 (+)
LOC110530535 LOC106569400 coding upstream 62103 73844648 ~ 73862206 (+)
LOC110530534 LOC106569406 coding upstream 86934 73834830 ~ 73837375 (+)
si:ch1073-82l19.1 LOC106569408 coding upstream 130489 73770882 ~ 73793820 (+)
LOC110530531 LOC106569411 coding upstream 162577 73754013 ~ 73761732 (+)
LOC110530543 gpbl1 coding downstream 8597 73940094 ~ 73951207 (+)
prdx1 nkef coding downstream 43159 73974656 ~ 73981179 (+)
zte38 LOC106569397 coding downstream 51211 73982708 ~ 73991211 (+)
LOC110530564 LOC106569383 coding downstream 296614 74228111 ~ 74230113 (+)
LOC110530563 LOC106569381 coding downstream 312904 74244401 ~ 74247287 (+)
G745568 NA non-coding upstream 32268 73891638 ~ 73892041 (+)
G745557 NA non-coding upstream 41859 73870430 ~ 73882450 (+)
G745534 NA non-coding upstream 112887 73809963 ~ 73811422 (+)
G745501 NA non-coding upstream 170444 73753604 ~ 73753865 (+)
G745594 NA non-coding downstream 1998 73933495 ~ 73933754 (+)
G745595 NA non-coding downstream 3811 73935308 ~ 73935597 (+)
G745589 NA non-coding downstream 5012 73936509 ~ 73936859 (+)
G745590 NA non-coding downstream 5451 73936948 ~ 73937684 (+)
G745585 NA non-coding downstream 6843 73938340 ~ 73939164 (+)
G745489 NA other upstream 203659 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 329071 73593637 ~ 73595238 (+)
G745083 NA other upstream 673813 73249424 ~ 73250496 (+)
G744697 NA other upstream 1055927 72867101 ~ 72868382 (+)
G744696 NA other upstream 1059606 72862256 ~ 72864703 (+)
G746052 NA other downstream 1021188 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 1083147 75014644 ~ 75033896 (+)
G746936 NA other downstream 1396275 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1418711 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1448005 75379450 ~ 75383243 (+)

Expression


Co-expression Network