XLOC_002588 (osbp2)


Basic Information

Item Value
gene id XLOC_002588
gene name osbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7916720 ~ 7974155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004817
ATGACCGAGCTGGTGGTGCGGACTCTTCCGTCTCCTTCAGGTGTCCAAGGTCCCGGTCCGGACACTTATAAAGGATGGCTCTTTAAATGGACCAACTACCTGAAGGGGTACCAGCGCCGGTGGTTCGTGCTGAGCAACGGCCTCCTGTCCTACTACAGGACTCAAGCGGAGATGGCACACACCTGCCGTGGCACAATTACCTTGGCGACGGTGCACATAGAAGTGGGCGACACCTGTCACTTTGTGTTGACGAGTGGTGGGCGGAGCTACCACCTCAAGGCCTATTCAGAGGGCGAGTGCCAGCGCTGGGTTTCAGCTCTGCAACAGGCCAAAGCAAACGCCACCCATATGATGCCCCATTCAGATGACTCAGGAGACGAGGGTCCTCTAGCCCAGCCAGACCGTGCTCTTATCCAGGGGGCGCTCAAGACTCTGGTCAGCAAGCTTGAAGATCTCAGCACCTGCAACGAGCTGATAGGGAAGCACGGTGCAGCTCTCCAGCGCTCCCTCAGTGAACTTGAAGACCTGCGCGCTCCCACCGACGGTACCGATAAACTGAAAACAGTCAACGAGAGGGCCACACTCTTCCGCATCACTTCCAATGCTATGATCAATGCCTGTCAGGACTTTGTGGATCTAGCAGAGGGACACAGCCGGCGGTGGCAGCGTGCATTGCAGTATGAAAGGGAACAGCGCCACCACCTGGAGGAGACAATTGAGCAGCTAGCCAAACAGCACAACAGTCTGGAGAGAGCCTGGAGAGAGTCCCCCAGCACACTCAACCAAGCAGCAGAGGGAACACTGGAGGGAGAATCCAGTGAAGAGAATGAAGACATAGAGTTCTTTGATGCCATGGAAGATTCTCCAGCCTTCATCACAGTGCCTGCGGACAATCACTCACAGCACAGaCTCTTGAGCAGTAACCAGAGCGTGACCAGTGGAAGTTTATCTAGTAACTGGAGCCAGGACGACAATGTGACAGATAGTTTTGTCTGTTCACAGGACGGTTCTGGTAGTTACCTGCGCAGAGGGAGACGCCGCCGCATCCCGGATAAACCCAACTACTCTCTCAACCTGTGGAGCATCATGAAGAACTGCATTGGCAAAGAGCTCTCCAAAATACCCATGCCTGTGAACTTCAACGAGCCACTGTCGATGCTGCAGCGTTTGACAGAGGATCTGGAGTACAGTGAGCTGCTGGACCGAGCGGCCCGCTGCGACTCGTCTCTGGAGCAGATGTGTTTAGTGGCCGCTTTCTCCGTCTCGTCCTATTCAACCACTGTCCACCGCATAGGGAAGCCCTTCAACCCTCTGCTGGGAGAGACCTATGAGCTGGACCGGCTGGAGGAGTATGGATACCGCTCCATCTGTGAACAGATCAGTCATCATCCTCCAGCGGCGGCACATCACGTCATTTCACAGCGAGGCTGGACTCTGTGGCAGGAGATCACCATCGACAGCAAATTTCGTGGCAAATACATCTCCATCATGCCATTAGGCAACATTCACCTTAAGTTCCACACCAGCGGGAATCATTATGTGTGGAGCAAGGTGACCTCCACCGTGCACAATATTATCGTGGGCAAGCTATGGATTGATCAATCTGGAGACATTATAATAGTGAACCACCGGAGCAAGGACACGTGCCACCTCAAATTCTCCCCTTACAGCTATTTTTCCAGAGATGTTCCCCGCAAGGTCACAGGCGTTGTGACGGATGGTGAAGGCAGCGCACACTACATTCTCTCCGGAACGTGGGATGAGAAAATGGAGAGTGCAAAGATCATAGAGAGCAGCCACGCCTGTGGAGGATCTGAAGGCAAACAGAAAACTGTCTATCAGACTCTCCCACCAAAACTACTGTGGAAGAAATACCCTCTCCCTGAGAATGCAGAGAACATGTATTACTTCTCTTCTCTGGCGTTGACTTTGAATGAGCTGGAGGACGGTATAGCCCCCACTGACAGCCGTCTGCGGCCAGACCAGCGGCTGATGGAGGCTGGGTTGTGGGATGAAGCGAACACCGAGAAACAGCGTCTGGAGGAGCGTCAGAGACTAGAAAGAAGGAAGAGAGATGCACAGGCCAACCTCGCACTCGAAGAGGGTAAGGAGGTGGAGACCTACCAGCCCATCTGGTTTATGAAAAGGACTGACCTAGAGACAGGTGAGAGCAGCTTCATGTACAAAGGAGGCTACTGGGAAGCCAAAGACAGACAGGACTGGAGTCAGTGTCCAGCCATCTTCTAAAGCCTCTCTCCTCAGCCAGGACCAGCCTGCCATTCCAATAATCCTTGAAAACTGCTTTCCAATGTTTTCCAAGGATCTCAAACATGCacagaatatacacattttgtcTTCTAAGGCACCctcgtgtatataaatatatatcttaatTTGCTGTTAGCCTGTATTGAAGCAGGAAAACTTATATTGCATGAACAAAAAAGCACAATAGGTGGCAGCACTTTATAAATGTCCCAGTGACACACACTTATAATGTTAATGATCTGAGGAATGTAACACTTCACCAGGCAAAAGACTCTTCCTCATGCCTGGTTCGCTTCAGGTCAACTGTATAACATCCACCATTGTGTGATAAAAGACGTTCAGCGCATTTATGAAGCATTAGGATCGAGGGCCCTCAAGACCGTGTTCCTCCATTGAGCTGTAGAATAGATAGTAGTAACGCTCCATAAACAACCTAGATAGACTCTAGATCAGTGAATCGATGttgcttttacaaaaaaaaaaaaattactatcaAAGCTGATTTATTCAATAGTAATGTGAGAGTTCTACTCTAGCTGCCCGTTTAGTTATTTAGCACAAGCGTTATGTAAATGTCATTGTGTCGGTGATGAATTAAGGCTTAATTGAGATTCTCCATATACAGTCATGACTAAATGTTtgcaaacatgatacacttgcacaattatttatttatttttggacagATGAGCTATTGCAGGTCATTCAAAATGACTCATCTGCATGCAGTGCAGATTTGTTGAATTATGCAAATTAAGCATGCACTTGGACAGATATGCTAATGGAGTATTCGTCTAACACTGCATCAGGTCACCTTTTGGGTTGTTTGCGAACCTTTGGCTgttgctgtgtttttaatatttgtgGTGGCAATACTTTGTTATTTCCAATATTAGCTGCTAAAGTACATATATGCTACATATGTCATTCACGATGCAAGGAACAGTGGAATATTGACCGTAAACTGTAACCAAAATGAGGGTGAAGGTTAACTCGTATTTGGGCATTAAAAGCAGTTAGGTAAAGTGTATATCATGGAATATTGTAGTACAGTATGTTAAGGACTGATTGAACATGATGTTTATTAATGACtgtgtttgaggttttttttaACCAAAGGTAACGTGTTGTGTGTTTGGAACCACAAGCAATGCAAAAATTACACTTTCCAATGTACTCTGTATTAATCAGACACTAAAAGATGAGTATTAGGATTAGATCACTTGATTATGATGTTGAATATGCTGGATATTGCAATCTAAAGACTTTTAAAATTC
>TCONS_00004818
ATGACCGAGCTGGTGGTGCGGACTCTTCCGTCTCCTTCAGGTGTCCAAGGTCCCGGTCCGGACACTTATAAAGGATGGCTCTTTAAATGGACCAACTACCTGAAGGGGTACCAGCGCCGGTGGTTCGTGCTGAGCAACGGCCTCCTGTCCTACTACAGGACTCAAGCGGAGATGGCACACACCTGCCGTGGCACAATTACCTTGGCGACGGTGCACATAGAAGTGGGCGACACCTGTCACTTTGTGTTGACGAGTGGTGGGCGGAGCTACCACCTCAAGGCCTATTCAGAGGGCGAGTGCCAGCGCTGGGTTTCAGCTCTGCAACAGGCCAAAGCAAACGCCACCCATATGATGCCCCATTCAGATGACTCAGGAGACGAGGGTCCTCTAGCCCAGCCAGACCGTGCTCTTATCCAGGGGGCGCTCAAGACTCTGGTCAGCAAGCTTGAAGATCTCAGCACCTGCAACGAGCTGATAGGGAAGCACGGTGCAGCTCTCCAGCGCTCCCTCAGTGAACTTGAAGACCTGCGCGCTCCCACCGACGGTACCGATAAACTGAAAACAGTCAACGAGAGGGCCACACTCTTCCGCATCACTTCCAATGCTATGATCAATGCCTGTCAGGACTTTGTGGATCTAGCAGAGGGACACAGCCGGCGGTGGCAGCGTGCATTGCAGTATGAAAGGGAACAGCGCCACCACCTGGAGGAGACAATTGAGCAGCTAGCCAAACAGCACAACAGTCTGGAGAGAGCCTGGAGAGAGTCCCCCAGCACACTCAACCAAGCAGCAGAGGGAACACTGGAGGGAGAATCCAGTGAAGAGAATGAAGACATAGAGTTCTTTGATGCCATGGAAGATTCTCCAGCCTTCATCACAGTGCCTGCGGACAATCACTCACAGCACAGaCTCTTGAGCAGTAACCAGAGCGTGACCAGTGGAAGTTTATCTAGTAACTGGAGCCAGGACGACAATGACGGTTCTGGTAGTTACCTGCGCAGAGGGAGACGCCGCCGCATCCCGGATAAACCCAACTACTCTCTCAACCTGTGGAGCATCATGAAGAACTGCATTGGCAAAGAGCTCTCCAAAATACCCATGCCTGTGAACTTCAACGAGCCACTGTCGATGCTGCAGCGTTTGACAGAGGATCTGGAGTACAGTGAGCTGCTGGACCGAGCGGCCCGCTGCGACTCGTCTCTGGAGCAGATGTGTTTAGTGGCCGCTTTCTCCGTCTCGTCCTATTCAACCACTGTCCACCGCATAGGGAAGCCCTTCAACCCTCTGCTGGGAGAGACCTATGAGCTGGACCGGCTGGAGGAGTATGGATACCGCTCCATCTGTGAACAGATCAGTCATCATCCTCCAGCGGCGGCACATCACGTCATTTCACAGCGAGGCTGGACTCTGTGGCAGGAGATCACCATCGACAGCAAATTTCGTGGCAAATACATCTCCATCATGCCATTAGGCAACATTCACCTTAAGTTCCACACCAGCGGGAATCATTATGTGTGGAGCAAGGTGACCTCCACCGTGCACAATATTATCGTGGGCAAGCTATGGATTGATCAATCTGGAGACATTATAATAGTGAACCACCGGAGCAAGGACACGTGCCACCTCAAATTCTCCCCTTACAGCTATTTTTCCAGAGATGTTCCCCGCAAGGTCACAGGCGTTGTGACGGATGGTGAAGGCAGCGCACACTACATTCTCTCCGGAACGTGGGATGAGAAAATGGAGAGTGCAAAGATCATAGAGAGCAGCCACGCCTGTGGAGGATCTGAAGGCAAACAGAAAACTGTCTATCAGACTCTCCCACCAAAACTACTGTGGAAGAAATACCCTCTCCCTGAGAATGCAGAGAACATGTATTACTTCTCTTCTCTGGCGTTGACTTTGAATGAGCTGGAGGACGGTATAGCCCCCACTGACAGCCGTCTGCGGCCAGACCAGCGGCTGATGGAGGCTGGGTTGTGGGATGAAGCGAACACCGAGAAACAGCGTCTGGAGGAGCGTCAGAGACTAGAAAGAAGGAAGAGAGATGCACAGGCCAACCTCGCACTCGAAGAGGGTAAGGAGGTGGAGACCTACCAGCCCATCTGGTTTATGAAAAGGACTGACCTAGAGACAGGTGAGAGCAGCTTCATGTACAAAGGAGGCTACTGGGAAGCCAAAGACAGACAGGACTGGAGTCAGTGTCCAGCCATCTTCTAA
>TCONS_00004819
CCAAGCCGGACGAAGGATGAGAAGGAAAGAAGGAGGGTGGGAGAGAAGAAAAACAGGAGCGAGAGGGATGGGAAGGTGACTGAGGAGACGTTGCTTTATACGCTTTCAGCCTAAATCACTGAAACATCACAGTCACAGCACTCACGCTTGCTTTGTGTTTAGCTGTGATTTGTTCTGGTGGAAAAAAGATGACTCAGGAGACGAGGGTCCTCTAGCCCAGCCAGACCGTGCTCTTATCCAGGGGGCGCTCAAGACTCTGGTCAGCAAGCTTGAAGATCTCAGCACCTGCAACGAGCTGATAGGGAAGCACGGTGCAGCTCTCCAGCGCTCCCTCAGTGAACTTGAAGACCTGCGCGCTCCCACCGACGGTACCGATAAACTGAAAACAGTCAACGAGAGGGCCACACTCTTCCGCATCACTTCCAATGCTATGATCAATGCCTGTCAGGACTTTGTGGATCTAGCAGAGGGACACAGCCGGCGGTGGCAGCGTGCATTGCAGTATGAAAGGGAACAGCGCCACCACCTGGAGGAGACAATTGAGCAGCTAGCCAAACAGCACAACAGTCTGGAGAGAGCCTGGAGAGAGTCCCCCAGCACACTCAACCAAGCAGCAGAGGGAACACTGGAGGGAGAATCCAGTGAAGAGAATGAAGACATAGAGTTCTTTGATGCCATGGAAGATTCTCCAGCCTTCATCACAGTGCCTGCGGACAATCACTCACAGCACAGaCTCTTGAGCAGTAACCAGAGCGTGACCAGTGGAAGTTTATCTAGTAACTGGAGCCAGGACGACAATATAGTTTTGTCTGTTCACAGGACGGTTCTGGTAGTTACCTGCGCAGAGGGAGACGCCGCCGCATCCCGGATAAACCCAACTACTCTCTCAACCTGTGGAGCATCATGAAGAACTGCATTGGCAAAGAGCTCTCCAAAATACCCATGCCTGT

Function

symbol description
osbp2 Enables cholesterol binding activity. Predicted to be involved in sterol transport. Predicted to act upstream of or within spermatid development. Predicted to be located in apical dendrite. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Biomarker of cholangiocarcinoma.

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-091113-18 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP2 (oxysterol binding protein 2).

Ensembl:

ensembl_id ENSDARG00000053487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004817 False 3545 mRNA 0.47 14 7916720 7974155
TCONS_00004818 False 2220 mRNA 0.54 14 7918018 7974155
TCONS_00004819 True 950 processed_transcript 0.52 6 7929771 7959838

Neighbor

gene id symbol gene type direction distance location
XLOC_002587 slc35e4 coding downstream 3129 7901012 ~ 7913591 (-)
XLOC_002585 BX294661.1 coding downstream 24036 7870627 ~ 7892684 (-)
XLOC_002586 NA coding downstream 30680 7883753 ~ 7886040 (-)
XLOC_002584 inpp5ja coding downstream 58167 7831439 ~ 7858553 (-)
XLOC_002583 mat2aa coding downstream 95034 7810455 ~ 7821686 (-)
XLOC_002589 ewsr1a coding upstream 1430 7975585 ~ 7988417 (-)
XLOC_002590 NA coding upstream 6964 7981119 ~ 7983744 (-)
XLOC_002591 atp6v0a2a coding upstream 14591 7988746 ~ 8033468 (-)
XLOC_002592 nfkbil1 coding upstream 60533 8034688 ~ 8041948 (-)
XLOC_002593 zgc:136254 coding upstream 71209 8045364 ~ 8046764 (-)
XLOC_002575 BX537303.2 non-coding downstream 404597 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 662822 7238244 ~ 7253898 (-)
XLOC_002571 NA non-coding downstream 855183 7050325 ~ 7061537 (-)
XLOC_002602 NA non-coding upstream 644563 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 664766 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 701735 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 867543 8841698 ~ 8858568 (-)

Expression


Co-expression Network