LOC110530564 (LOC106569383)


Basic Information

Item Value
gene id LOC110530564
gene name LOC106569383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74228111 ~ 74230113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613752.2
CCGTAGGAAATCATATGATCAGGCGCTCCTCCCCTCCGTTTGTTTTCGCGGAAGTAAAAACTATCAAtgtggtagctagctaactaacatttgTCTTTCCGACTGAAAATTATCTTTAGAAACATAACACTAGTCAGATAAAATGTTGTTCCAGGAGAATATGACTAATTGTGTTACTTTTCAAACCAAATTAAGCTCAGTTATGGATGTGTTGGCCAAAACTGCGGTGGCAGAAATAAGTAAAATGTTCGATGATGGGTTTGCTGTTTTACGCTTGGAAATGTGCAGAAGAGAAAATGAAATTGAAACCTTGAAAAGACAATTATTGTTTATGGAGAACGAACGGCAAACGACGAGGTCCAAAACGCAAGAAGCAGGCTGTTCTTCTACATGCTCGTCCTCTTCCAGCCGAACGGAGGAGGGACAGGGGTCCAAGGGGTCTGATGAGGATGCTAGTGAAAGGACTTCTTTTGAGCAGAACGCCAGAGAGAAAAATGACCAACTGGATCGAAATAGACCACAGCCACATGCAGAAGAAGTAGAGGGGCTTGATGAACAGTACAGGTCTGGCCACAGAGAGAAGGGTAGTGGACTAGAGTTAGTGAAGAGAGAGCAAGTGGAGGAGTATGATGTTATTTCACTACATTCATCAGGAAGTGAACATGGCACAGAGAGTTCAGATCATGAGGAAACTGAGTTTGctgtggatgagagagagagtcagctctgGGCGTCTTTAACAGAGCGCAACTGTGACTCGGAGGGTCCAGATTACCATAAGTGCACAGAACAATATCCACTGGATCAAGATACAGACATACAGCTCATTCAAAGTGCAGTGGAGGGTCTCGATAGCATTCAATCGTCCGAGATGGATGACATTAACAGAGTTATGAAAGAAGAGATGCGAGCACAGTCTGTTTGGAATGACAGAAGGACCCCTACAGATTTGGTTCAGGCACAGCCAGGACAGCACAGAGAAACCATGCACCCAGAGAGAAACCAGGATGGGACAACTACCAGAGTGCCATCAGACAAACAAACACTAGCCAATGAGGGTGCAGGATATTCCAATGTTTGGCTAAACAGTGTATTTTCGCTTGCCCCAAATAGTTTTCACTCAGCAAAGGTATCCCCAATGAGAACCCCAGCAAGAGAGAAGTGGTTTGTTTGCTCCTTCTGTGGAAAGAGCTTTGACCGGTTTGGTCACCTGGAGATGCATCAGCGGATTCATACGGGAGAGAAACCGTACAGCTGTGTCACGTGCGGGAGGTGTTTCGCTCAGCAGAGTAATCTCCGCACACACCAGCGAGTACACAGGGCCCTCAGAACAAACCAAACTGTCTACTGATCCATCACCATGACGAGACAATTTAGAGCATCCTGGAGAAACCAGAAGCCCATCCCACACGTTATGAAACACAACCTCATTGACAAACATTTTCTAATGAGAAGACCATCAAGACACTTGCAGAAAGCAGCAGTGTGTTACTTTTGTCTTCCCATTCTATAAAGTGAGAGCAGTGAGACCCTACCACAACTGTTGCACTAGTGGTGCTTATATACTGTAGTGAGGGATCAGAGTTGCAGGTTTACAGCTTCCTGCTTGTAACCTTTTAAGGACCGCTTAAGAGGAGGATCTCCATCATCTTTAGGTTTTTGTAGACCTATGCCAGACTAACACTACAATGGACATGCTTTTGTCAATGCATACATTTTTATGAATAAATGTGAATTCTCTCAAACTT

Function

NR:

description
gastrula zinc finger protein XlCGF48.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613752.2 True 1748 mRNA 0.45 2 74228111 74230113

Neighbor

gene id symbol gene type direction distance location
zte38 LOC106569397 coding upstream 238196 73982708 ~ 73991211 (+)
prdx1 nkef coding upstream 246932 73974656 ~ 73981179 (+)
LOC110530543 gpbl1 coding upstream 276904 73940094 ~ 73951207 (+)
LOC110530541 ipp coding upstream 296614 73924309 ~ 73931497 (+)
LOC110530540 LOC106569403 coding upstream 310113 73909778 ~ 73917998 (+)
LOC110530563 LOC106569381 coding downstream 14288 74244401 ~ 74247287 (+)
LOC118965552 NA coding downstream 45213 74275326 ~ 74279768 (+)
si:dkeyp-66d1.7 LOC106569375 coding downstream 138024 74368137 ~ 74376776 (+)
ftr66 LOC106569374 coding downstream 146734 74376847 ~ 74382998 (+)
ltb4r2b LOC106569372 coding downstream 178272 74408385 ~ 74413205 (+)
G745737 tep1 non-coding upstream 8157 74218598 ~ 74219954 (+)
G745689 tep1 non-coding upstream 17061 74209489 ~ 74211050 (+)
G745646 LOC106600394 non-coding upstream 27402 74074951 ~ 74200709 (+)
G745655 LOC106569384 non-coding upstream 113097 74105268 ~ 74115014 (+)
G745645 LOC106569384 non-coding upstream 126233 74053099 ~ 74101878 (+)
G745746 LOC106569380 non-coding downstream 18240 74248353 ~ 74249745 (+)
G745795 LOC106569378 non-coding downstream 72993 74303106 ~ 74308955 (+)
G745796 NA non-coding downstream 81871 74311984 ~ 74312241 (+)
G745799 NA non-coding downstream 83402 74313515 ~ 74313778 (+)
G745800 NA non-coding downstream 84461 74314574 ~ 74315358 (+)
G745489 NA other upstream 507461 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 632873 73593637 ~ 73595238 (+)
G745083 NA other upstream 977615 73249424 ~ 73250496 (+)
G744697 NA other upstream 1359729 72867101 ~ 72868382 (+)
G744696 NA other upstream 1363408 72862256 ~ 72864703 (+)
G746052 NA other downstream 722572 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 784531 75014644 ~ 75033896 (+)
G746936 NA other downstream 1097659 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1120095 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1149389 75379450 ~ 75383243 (+)

Expression


Co-expression Network