LOC110530563 (LOC106569381)


Basic Information

Item Value
gene id LOC110530563
gene name LOC106569381
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74244401 ~ 74247287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613751.2
CTCTTTAATGATCATATGACCACTCGTTCCTCCCCTCCGTTTGCTTTCGCGGAAGTAAAATCTGTCAATGAGGTAGCTAACAAAGCAGAGCATCTATTactatttcttgttttttttcagaTTTAAAATCTGTAGAAACATAACACTAGTCAGATAAAATGTTATTCCAGGAAAATATGACAAATTATGTTACTTTTCAGACCAAATTAACCTCCGTTATGGATGTGTTGTCCAAAACTGCGGTGGCAGAAATAAGTAAATTATTCGATGATGGGTTTGCTGTTTTACGCTTGGAAATGTGCAGAAGAGAAAATGAAATAGAAGCCTTAAAAATCAAATTATTGTTTATGGAGAACGAACGGCAAACGACAAGGTCCAAAGCGCGAGAAGCAGGATGTTCTTCCACATGCTCTTCGTCTTccagcagaacagagcaggGGTCCAAAGGCTGTGATGAGGATCCTGGTGAAAGGACTTCATTTGAGCAGAATGCCAGAGAGAAAGACGACCAACTGCATCAAAATAGACCACAGCCACCTGCAGAAGAAGTAGAGGGACTTGAACAGAACAGGTCAGGCCACAGAGAGAAGGATAGTGGACTAGAGTTCGTGAAGACTGAGCAGGAAGAGTATGATGTAATTTCACTACATACATCAGTAAGTGAACATGGCACAGAGAGATCAGATCATGAGGAAACTGAGTTTGctgtggatgagagagagagtcagctctgGGAGTCTTTAACAGAGCGCAACTGTGACTCAGAGGGTCCAGATTACCATAAGTGCACAGAACAATATCCACTGGATCAAGATACAGACATACAGCTCATTCAAAGTGCAGTGGAGGGTCTCAGTAGCGGTCCATCGTCCGAGATGGGTGACATTAACAGAGTTATGAAAGAAGAGATGCGAGCACAGTCTGTTTGGAATGACAGAAGGGCCCCTACAGATTTGGCTCAGGCACAGCCAGGACAGCACAGAGAAACCATGCACCCAGAGAGAACCCAGGATGGGACAACTACCAGAGTGCCATCAGACAAACAAACACTAGCCAATGAGGGTGCAGGATATTCCAATGTTTGGCTAAACAACGTATTCTCACTTGCCCCAAATAGTTCAAATGGTTTCAACTCAGCAAAGGTATCCCCAAGGAGAACCCCAGCAAGAGAGAAGTGGTTTGTTTGCTCCTTCTGTGGAAAGAGCTTTGACCGGTTTGGTCACCTGGAGATGCATCAGCGGATTCATACGGGAGAGAAACCGTACAGCTGTGTCACGTGCGGGAGGTGTTTCGCTCAGCAGAGTAATCTCCGCAGACACCAGCGAGTACACAGGGCCTCACAACAAACCAAACTGTCTACTGATCGTTATCACCATGACTAgacaactaagagcattgtagaACAATATTTTCTAATGACTGAGAACAGAGTTGATAAGACCATCAAGACACTTGCAGAAATCAGCAGTGTGTTACTTTTGTCTTCCCATTCTATAAAGTGAGAGCAGTGAGACCCTACCACAACTGTTGCACTAGTGGTGCTTATATACTGTAGTGAGGGATCAGAGTTGCAGGTTTACAGCTTCCTGCTTGTAACCTTTTAAGGAACGCTTAAGAGGAGGATCTCCATCATCTTTAGGTTTTTGTAGACCTATGCCAGACTAACACTACAATGGACATGCTTTTGTCAATGCATACATTTGTATGAATAAAAATCTGAATTATCCAA

Function

NR:

description
zinc finger protein 165-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613751.2 True 1729 mRNA 0.44 2 74244401 74247287

Neighbor

gene id symbol gene type direction distance location
LOC110530564 LOC106569383 coding upstream 14288 74228111 ~ 74230113 (+)
zte38 LOC106569397 coding upstream 254486 73982708 ~ 73991211 (+)
prdx1 nkef coding upstream 263222 73974656 ~ 73981179 (+)
LOC110530543 gpbl1 coding upstream 293194 73940094 ~ 73951207 (+)
LOC110530541 ipp coding upstream 312904 73924309 ~ 73931497 (+)
LOC118965552 NA coding downstream 28039 74275326 ~ 74279768 (+)
si:dkeyp-66d1.7 LOC106569375 coding downstream 120850 74368137 ~ 74376776 (+)
ftr66 LOC106569374 coding downstream 129560 74376847 ~ 74382998 (+)
ltb4r2b LOC106569372 coding downstream 161098 74408385 ~ 74413205 (+)
sdr39u1 sdr39u1 coding downstream 177160 74424447 ~ 74428142 (+)
G745737 tep1 non-coding upstream 24447 74218598 ~ 74219954 (+)
G745689 tep1 non-coding upstream 33351 74209489 ~ 74211050 (+)
G745646 LOC106600394 non-coding upstream 43692 74074951 ~ 74200709 (+)
G745655 LOC106569384 non-coding upstream 129387 74105268 ~ 74115014 (+)
G745645 LOC106569384 non-coding upstream 142523 74053099 ~ 74101878 (+)
G745746 LOC106569380 non-coding downstream 1066 74248353 ~ 74249745 (+)
G745795 LOC106569378 non-coding downstream 55819 74303106 ~ 74308955 (+)
G745796 NA non-coding downstream 64697 74311984 ~ 74312241 (+)
G745799 NA non-coding downstream 66228 74313515 ~ 74313778 (+)
G745800 NA non-coding downstream 67287 74314574 ~ 74315358 (+)
G745489 NA other upstream 523751 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 649163 73593637 ~ 73595238 (+)
G745083 NA other upstream 993905 73249424 ~ 73250496 (+)
G744697 NA other upstream 1376019 72867101 ~ 72868382 (+)
G744696 NA other upstream 1379698 72862256 ~ 72864703 (+)
G746052 NA other downstream 705398 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 767357 75014644 ~ 75033896 (+)
G746936 NA other downstream 1080485 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1102921 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1132215 75379450 ~ 75383243 (+)

Expression


Co-expression Network