LOC110530569 (LOC106569376)


Basic Information

Item Value
gene id LOC110530569
gene name LOC106569376
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74346208 ~ 74351147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613760.2
AATCCATCCCAGAGTGACGCACAATTCGCGTCGATTTTATACGCACACGTCATTTTACTGCGTCTACAGTACATTTGTTTGGAGAGAGAAGATGGCGTCAGAATCAGCGGAAACGTTAGCCGAACAGGACACAGAACTGGACGAGTTATTGGACAGTGCACTCGATGACTTTGAAAAGACAAACCCAGCCCCCCCAGCCCCAGTTCCTGCTGCTGCCGCGGCTCCCCCATCAGCAAAGGGTAGTGAGGAGAAAccccctctACTGGAAGACAGTCAGTTCTTTGAGGCTCTGTTTGAAGGGGAGATGGCCTCTCAGGCGAAGGAGGAGTGGGAGAAAGCCATGACTGAACTAGCACAGGAAGAACCTGAGCTGCTGCAACACTTTCACAAATTGTCAGAGGCAGCAGGGAAAGTTGGTACTGATGTAGCCTCCCAACAAGAATTCACTTCCTGTCTCAAAGACACCCTCAGTGGGTTGGCGAAAAATGCAGACAACTTACAGAGTGCAGGTTTGGCTGGAGAGGATCTAGCAAAGACTCTGGAAGGGCTGGGATTGGATGAGGGTGGACAGGGGGGCGGGGAAGATGGAAACATCTTGCCGATTATGCAGTCCATCATGCAGAATCTACTCTCCAAGGAAGTGCTCTACCCATCTCTCAAAGAGATCACTGAGAAGTATCCTGAGTGGTTGAACAGCAATCGCCAGTCCCTCCCGGCAGATCAGTTCCAGCGCTACGAACAGCAGCACAAGGTCATGGGAGAGATCTGCAGCCAGTttgagaaggagggagagcgaaGTGGAAGGGATGGGGAAAATCGCTTTGAGAGCATTCTGGAACTCATGCAGCAGCTACAAGACCTGGGCCAACCACCCAAAGAGCTGGCTGGTGAATCGCCACCTGGCCTGAACTTTGACCTGGAATCCCTGAATCTCCCAGGAGCCTCTGGGGCTGGAGCGGCAGAGCAGTGCTCAATCATGTGATGTCAGAGCAGCCAGATCAATAGATGCACAGGCTAGGAGCTGTGTGCGAGGGGGGATGATGAGAGAGGACGATCGATCACAAGACAAGGAGGAGAACGAGACTGTTTGCACTGCTCTCCTCGCAACAAATGTTTCTGTGTCTACAGAGAAGGCACAGTCAAGGGTGGCACAACAAACCAATGTTACCACCCTTCGGTAACTCACTGACCATCACTTCACTGATTTTAAATTAATAGCTTTGGTTTTTCGTAAGCTTTTCCATTCATAGTACAGGTAGTagcatacccacacacacagctcaaatGACTAGCGCTTGACTTATGAGTCCGTTTTTACACTCACCATTGTTTAGCCTCATGGTAGAACTGGTTGAACTGGCCTATTGGTTAAAATGGTGCCTTGCATTATTGTTATAAACCCTACAGCAAGGATAGTAGGATTCTCTGTTGTGAGAGTTGCTGAGTGATGATTGAGTTGTTTCATAGCTGCAGTATCATCATGGGGCTGCGTGCCCAACAAAGGGTGTTGAGCCACCATCACAGTTCCACTCAATCAATAAAGTAACACCAACACCCCAGGGGTTGATTAGGTTGTTTCTGACCACTCGTTTAGAGTTATACATTTTGCCATTTTCATCATTAATACTGTTAATGTAACATGCGTGTAGATTAATATTGTTGGTTGCATAACCAGTGTACATTTGTGAATTATTTAAAGAAAATCGAGGAGTTAAACTTACCTCGTTCTAATTTCATAATCATAAGACGGCTAACTGATTTTTAGAGACTGACTTTACCTTGGTTAGTTATATAGTATCTTCCCAAAAGCTACTATGTTGTACCAGAGACGGTATATGGCTGTGCACTTGATTTGACCTCTAGTTTTCTTGATGTCGGTTCAAACATTGTTACATCCACAAGATGTAAGAACCAGTCCTGTGGCCAATTGTGACATATATTTATAATTGACATTATTCAAGTTTTTAAACAGGTTAGCGAGGTTGGTGCTCTGGTTTGCGCATGGGGCTAGAGCCAAGGTCGGTCAGTAACCATCGGGACTAAGACGGTCCCCTGAATCCCGGGGCGTCTGTCCAGTAGTGGGACTCTTTTGTGACTGTGGTTATAACCCTCCTAGCTTTTTATACACTACAAGTTATGGAAAAAAGGTTTCTGACACCGTGACCACAATGTCGAAATTGGATTTGGGCCATGATGAGAGAATACTGTTTCGCATGATTATATCGAAACCAGTACCACTACTGGTATGTGACCCTGCTGTTTTTCTTGTGATCAAAATGAtacgaatatatatatatagcatttATTTAAGGGACAGACAAGTAGTAAAACAGTTCAAATAATTTCAGAGAATCTTTACAAGAGTTGAAGTGATGTGCAAAAATGACTTTGCTGTGGGCACAGTGATTAGTAGTTAAAATTACTGTGAATTA

Function

NR:

description
peroxisomal biogenesis factor 19-like isoform X1

GO:

id name namespace
GO:0005777 peroxisome cellular_component

KEGG:

id description
K13337 PEX19; peroxin-19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613760.2 True 2432 mRNA 0.45 8 74346208 74351147
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530568 copa coding downstream 7802 74321330 ~ 74338406 (-)
LOC110530567 LOC106569378 coding downstream 28436 74301947 ~ 74317772 (-)
LOC110530566 LOC106569379 coding downstream 49626 74282781 ~ 74296582 (-)
LOC110530565 LOC106569423 coding downstream 65365 74274710 ~ 74280843 (-)
LOC110530562 LOC106569380 coding downstream 85019 74245924 ~ 74261189 (-)
nfatc4 nfatc4 coding upstream 45213 74396360 ~ 74403787 (-)
LOC110530578 NA coding upstream 71231 74422378 ~ 74423773 (-)
LOC110530579 NA coding upstream 74990 74426137 ~ 74427397 (-)
mettl17 mettl17 coding upstream 77115 74428262 ~ 74431938 (-)
si:ch211-284o19.8 LOC106569422 coding upstream 95690 74446837 ~ 74453468 (-)
G746501 NA non-coding downstream 47607 74250884 ~ 74298601 (-)
G746508 NA non-coding downstream 65957 74279778 ~ 74280251 (-)
G746476 NA non-coding downstream 187228 74158421 ~ 74158980 (-)
LOC110530560 NA non-coding downstream 257527 74087282 ~ 74088689 (-)
G746397 NA non-coding downstream 314649 74031286 ~ 74031559 (-)
G746522 NA non-coding upstream 10052 74361199 ~ 74361505 (-)
G746523 NA non-coding upstream 10972 74362119 ~ 74362385 (-)
G746524 NA non-coding upstream 11719 74362866 ~ 74363113 (-)
G746571 NA non-coding upstream 128295 74479442 ~ 74479681 (-)
LOC110530984 NA other downstream 401778 73939248 ~ 73944430 (-)
G745292 c8 other downstream 954775 73385652 ~ 73391433 (-)
G745300 NA other downstream 964507 73381301 ~ 73381701 (-)
G744608 NA other downstream 1625741 72695048 ~ 72720467 (-)
G744129 NA other downstream 2021216 72324192 ~ 72324992 (-)
G746730 NA other upstream 488584 74839731 ~ 74840090 (-)
G747266 NA other upstream 1011595 75362742 ~ 75363491 (-)
G747337 NA other upstream 1113933 75465080 ~ 75465616 (-)
LOC118965558 NA other upstream 1176288 75527435 ~ 75535384 (-)
LOC110530627 LOC106600212 other upstream 1226535 75576652 ~ 75578356 (-)

Expression

LOC110530569(LOC106569376) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110530569(LOC106569376) Expression in each Bioproject

Bar chart with 21 bars.
LOC110530569(LOC106569376) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network