ftr66 (LOC106569374)


Basic Information

Item Value
gene id ftr66
gene name LOC106569374
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74376847 ~ 74382998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986222.1
TGTGGGAGGTGTGGTTATGGGTTGCTGCTTTGTTTACAGTATGTAGGTTTATAAAAGGGATGCCACAGGCGGCTCCAGAGAAGCTTATACaatctccccctgtctctgtggTAGAGAATGGCACAAACAGGTCCTCTGGATAGAGAGCAATTGTGCTGCTCAATTTGTGTGGAGATACTGAAGGAGCCAGTAGCTCTTCCCTGTGGACACCGCTACTGTATGGGCTGTATCAGGGCCTGCTGGGGTGAAGATGACTCCTCTTACATCTTCAGCTGTCCTCAGTGCAGACAGACCTTCACTCCAAGACCAATTCTGAAGAGAAACATCATTTTGGCTGAGATGGTGGAGAAACTGAATACAGGAGGACTCCAAGCTGTACCCTCTGGTCAACGCTGCCGGTATGCTGAAGCTGGAGATGTGGCGTGTGATATCTGCCTCGGTGGTCAGATCAAAGCCACCAGTTCCTGCTTGGTGTGTCTGGCCTCTTACTGTGCAGCTCACCTCCACACTCACAACGAATCTCCTGCCCTTAAGAAGCACACCCTGGTTGAAGCCACCATGCCACTGCAGGGGCGGATCTGCTCTCATCACGATAGACTACTGGAGATCTACTGTCGTACTGatcagcagtgtgtctgtctgctgtgtgtgATGGATGAACACAAGAGCCATGCTACCGTCTCAGCTGTAGCAGAAAGCACCAAGAAACAGAGGCAGCTGGGGAAGTCGAGGAAGAAATGCAAACTGAGAATGAAAGCCAAAGAAAAGGAACTGCTGGATCTGAGACAGGCTCTGCAATCGCTGAAGCACTCTGCACAGACAGCAGTGGAGGACAGCCAGAAGATCTTTACTGAGCTGATCTGCTCCATAGAGAGAAGGTGCTGTGAGGTGAGAGAGCTGATCAGAGCCCAGGAGAAGACTGCAGTGAGTCAGACTGAAGGGCTCATACTGAGACTGGAGCAGGAGGTGGCTGAGCTGAGGAAGAAAGACTGTGAGCTGGAGCAGCTTTCACACACAGAGGATCATATCTATTTTCTACAGAACTGCCAGTCAATCTCTAAATCGACTGAACTCACAGACACACCCAGAATCACAGTGGTTCCTTTGGTGGATTTCGGTCAAGTTCGAGCCTCGGTATCAGCACTCCAGAAGAGATTGGAGGACCTGTTGAAAGGGGAATGGCCCAAAATATCCAGGGCAGCGGGCACAGTGAAACTCCTGCAGTGTCCAGAGCCCCGGATCAGACCAGAGTTCTTATACTATTCCTGTCAGCTCACACTGGACCCCCGGACAGCCCACAGGGACCTGAGTGTGTCTGAGGAGAACAAGGTGGTGACAGTGAGGGCCAGGGACCACTCCTGCCTGGAGCACCCAGAGAGGTTTGATCACTGGAGCCAGGTGCTGTGTACTGAGGCCCTGTCAGGACGCTGCTACTGGGAAGCCGAGTGGAGCGGGAGTGGCATCAACATGGCTGTGGCGTACAAAGAGAtgaccaggagaggagagggcaacGACTCCCACTTTGGACGCAATGACAAGTCCTGGAGTTTGTTCTGTTCCAGAAAAGGTTGTACCATCTGGCACAATAACGTGGCCACTAGAATACCCACTTCAACCTCCTCTAGGATAGGAGTGTACCTGGATCACAGGGCAGGAAGTCTGTGTTTCTACAGCGTCTCTGACACAATGACCCTGCTCCATAGAGTCCAAACCACATTCACTCAGCCCCTCTATCTTGGCTTTGAGTTTATGTGTTTCGGAGTCTTCGTTAAATTGTGCCAGATGGAGTGAAAGCGAAACAGCTGAGAGAAAGGCAGTAGCATGTGTGAAAATTTGTTTaatggtgaagttaataattgATAGTCTCAAATGTCGCTCACACCAGTTTGTATTTGTTTATTACTGAAGAGTTAAAGTATAGTTTAGTAGTTTAGTTACTGTAGAGTTTTTATCATTTGTATTTTGCTGGCAAAACAAAGTACAATAATTTCAATGCAAATTCTGCAAATACCTTCTTGTGAAATTAAAAGAAACGTCTATCCTGTTCCCCCATTCTCTAATCTGACTGTCATCACATCCCCATTATGTTGATTCCAAATTGTCTAATTAAGGGCAATATCAATAGCACTGACATTTGTGTTTTTAAAACACATTTATTGTGGTATGTTTTTATCAAAAGTGTCACAAGTAACCTCCGTGGCAACAGCACAGCAGTGCGCAAAAGTCCAGTCTGTTGcgaaattgtcacgccctgaccttggagatcctttttatgtctctattttggtttggtcagggcttgagttggggtgggcatttctatgtgttgtgtttctatgattttctatctctatgttttggcctggtatggttctcaatcagggacagctgtctatcgttgtctctgattgggaaccatacttaggtgtcTTTTTTCCCCACCTGTCTtggtgggaagttaactttgtttgatggcacatagcatgaagcttcacggtttgtttgtGTATTGTTTAGTCGGTGTCATTTTGAGttaataaagagaaaatgta

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986222.1 True 2552 mRNA 0.47 6 74376847 74382998

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-66d1.7 LOC106569375 coding upstream 71 74368137 ~ 74376776 (+)
LOC118965552 NA coding upstream 97079 74275326 ~ 74279768 (+)
LOC110530563 LOC106569381 coding upstream 129560 74244401 ~ 74247287 (+)
LOC110530564 LOC106569383 coding upstream 146734 74228111 ~ 74230113 (+)
zte38 LOC106569397 coding upstream 386932 73982708 ~ 73991211 (+)
ltb4r2b LOC106569372 coding downstream 25387 74408385 ~ 74413205 (+)
sdr39u1 sdr39u1 coding downstream 41449 74424447 ~ 74428142 (+)
parp2 parp2 coding downstream 48746 74431744 ~ 74438581 (+)
LOC110530582 LOC106569368 coding downstream 97509 74480507 ~ 74501122 (+)
LOC110530584 LOC106569421 coding downstream 147676 74530674 ~ 74534017 (+)
G745821 NA non-coding upstream 14166 74362439 ~ 74362681 (+)
G745810 NA non-coding upstream 29107 74344903 ~ 74347740 (+)
G745764 copa non-coding upstream 50946 74322703 ~ 74325901 (+)
G745804 NA non-coding upstream 57159 74319445 ~ 74319688 (+)
G745803 NA non-coding upstream 58632 74318004 ~ 74318215 (+)
G745873 NA non-coding downstream 96402 74479400 ~ 74480069 (+)
G745763 NA non-coding downstream 118473 74501471 ~ 74502888 (+)
G745766 NA non-coding downstream 119988 74502986 ~ 74503510 (+)
G745880 NA non-coding downstream 121757 74504755 ~ 74505021 (+)
G745489 NA other upstream 656197 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 781609 73593637 ~ 73595238 (+)
G745083 NA other upstream 1126351 73249424 ~ 73250496 (+)
G744697 NA other upstream 1508465 72867101 ~ 72868382 (+)
G744696 NA other upstream 1512144 72862256 ~ 72864703 (+)
G746052 NA other downstream 569687 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 631646 75014644 ~ 75033896 (+)
G746936 NA other downstream 944774 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 967210 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 996504 75379450 ~ 75383243 (+)

Expression


Co-expression Network