sdr39u1 (sdr39u1)


Basic Information

Item Value
gene id sdr39u1
gene name sdr39u1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74424447 ~ 74428142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613770.2
GGAGGGCTCTGTTCAGTATGGCATGTGACATATCTACTGGACACCGTTGGACAAATTCTTCTGCgtacactttaaaaaaaataatatttaactaggcaagtcagttaaagaacaaatcttattttcaatggcggtgTAGGAACAGGGGTTAACTcaggggttaactgccttgttcaggggcagaaaaacagattttaaccttgtcagctcgggaattcgatCTTCCGGTTACTAgatcaacgctctaaccactaggctacctgcagcgcCGTGCCAATTTGACTTAGTGTACTGTGAACAATCAACACAGGAAAGCAGAATTCCAACCCTGGAACTGGAAATTGTGTGATATGAGAGTGTTAATAGGAGGAGGATCTGGGTTTGTGGGAAGAGAGCTGACTCGTTTACTCAAGAACAAAGGTCATGAAGTCACAATAATATCCCGACAGCCAGGTCTGGGAAAGATCACATGGGGTGAATTGGAGTCTGGTGGCCTCCCACCATGTGAGGCTGCTGTCAATCTGTCTGGGGAGAATCTTATGAACCCACTGCGATGGTGGAATGAGGGTTATAGGAAGGATCTGTTCTCCAGTCGGGTTGACACAACCACAATTCTGTCTCAAGCCATTGCTGGGTCCCCCAATCCCCCTCATGCTTGGGTCCTTGTCACAGGTGTAGCATGTTATAAACCCAGTCTAACAGCTCAGTACACAGAAGACAGTGAGTGGACGCCATTTGACCTCCTGTCGAGACTGGTGAAGGAATGGGAGTCGGCGGGGCGTCTTCCTGAAAACATTGCACAGAATACCAGACAAGTAGTAATCAGACCAGGGGTAGTACTGGGCCGTGATGGTGGGGCCATGAAGCAGATGATGACTCCTTTCTGGCTAGGCCTTGGAGGCACGTTGGGGTCTGGCAGACAACCATTCCCCTGGATCCATGTCTCTGACCTGGCTGGAATCATCGCTCATGCCCTGGTGCCCTCTCCCGACACCCCCTCCTCTGCTGTCCCTCAAGTGTTTAACGGTGTCGCCCCAGCACTGAACACCAATTACGAGTTCACCAAAGAGCTGGGCCGGGTTCTGAGGAGACCCACTGTCTTCCCTGTGCCTGGATTTGTCATTGATGCCCTAATGGGTTCAGAGAGAGCCATAGTGCTAACCCAGGGTCAGAAAGTAGAACCCAAGAGGACTCTGGAGTCAGGCTTTCAGTACCAGTACCCAGACCTGAGCTCTGCCCTGAAGGAGATTGTTGGGAGCTAGATGTGAAACAGGAGATGTCAAGAGACTGAATGAGATTAGATTTTGTAACGTGAGAGAACTTCACTGATGTGAGCTTTTTTCCTGAATAAATATGAgatggaccctgtctttcaaaaaaaG

Function

symbol description
sdr39u1 Predicted to enable catalytic activity. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1).

NR:

description
epimerase family protein SDR39U1

GO: NA

KEGG:

id description
K07071 K07071; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613770.2 True 1382 mRNA 0.49 6 74424447 74428142

Neighbor

gene id symbol gene type direction distance location
ltb4r2b LOC106569372 coding upstream 11242 74408385 ~ 74413205 (+)
ftr66 LOC106569374 coding upstream 41449 74376847 ~ 74382998 (+)
si:dkeyp-66d1.7 LOC106569375 coding upstream 47671 74368137 ~ 74376776 (+)
LOC118965552 NA coding upstream 144679 74275326 ~ 74279768 (+)
LOC110530563 LOC106569381 coding upstream 177160 74244401 ~ 74247287 (+)
parp2 parp2 coding downstream 3602 74431744 ~ 74438581 (+)
LOC110530582 LOC106569368 coding downstream 52365 74480507 ~ 74501122 (+)
LOC110530584 LOC106569421 coding downstream 102532 74530674 ~ 74534017 (+)
LOC110530591 LOC100196652 coding downstream 269207 74697349 ~ 74712803 (+)
LOC110530590 LOC106569450 coding downstream 284948 74713090 ~ 74717411 (+)
G745826 NA non-coding upstream 44786 74379006 ~ 74379661 (+)
G745821 NA non-coding upstream 61766 74362439 ~ 74362681 (+)
G745810 NA non-coding upstream 76707 74344903 ~ 74347740 (+)
G745764 copa non-coding upstream 98546 74322703 ~ 74325901 (+)
G745873 NA non-coding downstream 51258 74479400 ~ 74480069 (+)
G745763 NA non-coding downstream 73329 74501471 ~ 74502888 (+)
G745766 NA non-coding downstream 74844 74502986 ~ 74503510 (+)
G745880 NA non-coding downstream 76613 74504755 ~ 74505021 (+)
G745884 LOC100136012 non-coding downstream 81274 74509416 ~ 74509726 (+)
G745489 NA other upstream 703797 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 829209 73593637 ~ 73595238 (+)
G745083 NA other upstream 1173951 73249424 ~ 73250496 (+)
G744697 NA other upstream 1556065 72867101 ~ 72868382 (+)
G744696 NA other upstream 1559744 72862256 ~ 72864703 (+)
G746052 NA other downstream 524543 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 586502 75014644 ~ 75033896 (+)
G746936 NA other downstream 899630 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 922066 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 951360 75379450 ~ 75383243 (+)

Expression


Co-expression Network