XLOC_025885


Basic Information

Item Value
gene id XLOC_025885
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 61039073 ~ 61041115 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052849
TTGCAATTACATAAGAATTATCAAAAAACTGCATCGTTTATTGTTGCCGAAACAAGCTTGTTTAAAACAACCTCCATTTCATGCCGACTTTAAAGGGTGAAGTTATACAGCAAATATCCATCGCTCATCAAGAATACTTTTACATTCCTTTATCTTCACATTGGTACTGTTAGGGTAGAAATAACTGTACACAATAGACTGTACACACTATAAACAAGTCCCTAAATATACATTCTAAGCTGTCATCTATTGCATATAAGCATGAACACACATAAACATGTTTACTCAatactataaaatatacaaaaagtcATATTAAATAATTCATACAGACATTTAAAGAGTAGTTTAGCCAGAAATTAAATTTACTCACAATCCTCAATCCTTCTGTCACATGAACATGGTAGTCTTAATTTTATCTTGGCTcttttatacagtataatataatggTGTTGAATGGTGACGGTTATTTTGAAGCTTTCAAAATCTCCTTAACAAGCTAAAACGCTTTTCCTTCTTcagttttagtcttgttttttgtccaaatatctaaaaattccataatcaagatgcattttctagacaagcaaaaataatgtcttgttttcaaaaataatcaagagtcaaaatgaagtatttccttaaaacaagcaaaatattgttGTTTGCCTTGTAGGATTTTGCTTActctattttgcttgttttaaggaaaaagtcacttaattttgactaatttctgaaagcaagacaatattttttgcttgtctggaaaatgcatgttgatttaggaatttttagatatttaaaatagaaacgAGACAGAAACTTGCATACACCACCAGGGGGTTAGCGCACGTCTTCTCAgaatttccttaaaaaaaaaacacacataaaaatgcatttaaaattgaTGTCAATGTTGCTGTCCTGTAATCGATTTTTGACTTGTTTCTTGAcgtcaatgttagatgtcaatttaatgtcgttttgacatcatgCTAGTTTACAATAATTGTAGAGATACAAAATACACTACAAATTTGCATTTTGAAATTGAAGCTGTCATATAAATATaacgtttttttttatcataaaaattTTGTGTCGTTATTTTGGTGGCcgaaaaaacatcagtgtgtggatgTCAAAATAGACGTCGAGATTTCAACATCAAAGCGATTtgtatttttgaagtgtttcaaagcaaaacaagattatttcacttacgAATGAACAGATAGCTAATAATAAAACACCTAATTATATCAGGTGACTACCTTAGAGTGTTATGTAAtcgatttttttgtttattaatgtcAATTTAACATCAAGCTAGTTCACATTAATCATAAGGATAGAAAATCCAGTGCAAATTTGGAATTAAACCTttcatataaatacaatttttaaatattttacaatacataGTGTccttattttggtggtcaaaagagcatcaatgtgtggatgtcaaatagacatcaAGATTTCATCAGCCTGaaattgatttacatttttgatgtgttttttgttttttattttaaagcaacaaCTAGAGTATTTCAAGCAAATAGCTCAAAATGACGTCAACAACACGTAAAAATGTCAACTGACTATCTTTGAATGTCTTGTATTCAACTTTTTATGTCAATTTAACGTCGTTTTAACATCAAGCTAGTTGACGTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052849 True 1688 lncRNA 0.30 2 61039073 61041115

Neighbor

gene id symbol gene type direction distance location
XLOC_025884 helz coding upstream 4524 60957512 ~ 61034549 (+)
XLOC_025883 NA coding upstream 176321 60861247 ~ 60862752 (+)
XLOC_025882 CABZ01087514.1 coding upstream 197879 60828813 ~ 60841194 (+)
XLOC_025881 NA coding upstream 240201 60797423 ~ 60798872 (+)
XLOC_025880 tsen54 coding upstream 243242 60761811 ~ 60795831 (+)
XLOC_025886 CR352263.1 coding downstream 144545 61185660 ~ 61187105 (+)
XLOC_025887 lmtk2 coding downstream 180079 61221194 ~ 61288774 (+)
XLOC_025888 NA coding downstream 297424 61338539 ~ 61352006 (+)
XLOC_025889 NA coding downstream 299578 61340693 ~ 61343708 (+)
XLOC_025890 NA coding downstream 316090 61357205 ~ 61384192 (+)
XLOC_025429 BX649540.1 misc upstream 30790037 30248739 ~ 30249036 (+)
XLOC_025878 NA non-coding upstream 354103 60677234 ~ 60684970 (+)
XLOC_025877 CABZ01068050.1 non-coding upstream 390839 60646736 ~ 60648234 (+)
XLOC_025874 NA non-coding upstream 494934 60543113 ~ 60544139 (+)
XLOC_025891 NA non-coding downstream 327374 61368489 ~ 61377055 (+)
XLOC_025898 NA non-coding downstream 1013579 62054694 ~ 62061838 (+)

Expression


Co-expression Network