LOC110530591 (LOC100196652)


Basic Information

Item Value
gene id LOC110530591
gene name LOC100196652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74697349 ~ 74712803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986228.1
TGTTTCCAGCTCCACGTGTGAGGAGTTGGTCTTGCTCTGCTCTGGGTGGTGGGGATCGGAAGTCCTTCCTCATTTTTAAgaaattatttacatttttactcACTGAAACTACAATTAATTtccaaataagcaaagaaacaTGAATTGGAGCTGGGTGCTTATGGCAGTCCTTCTGTCTTGTGGGGGACTGTCATGGGGTGAGCAGGGTTTGGACTTCCCTGAGTATGATGGGATGGACCGGGTCATCGAGCTGACTAACAAGAACTACAAGTCTGTGATGAAGACGCATGATGTGATGGTTCTGTACTACCATGAGCATCCCGGATCCGATGCCGTTGCCCAGAAACAGTTTGAAATCGAGGAACTGGCCCTGGAGCTTGCAGCTCAGGTACTTGATGACCTTGACGATGAGGATATTGGATTTGGCCTTGTTGATGAGAAGAAGGGCAGTGTTGTTGCTAAGAAACTAGGACTTGAGGAGGCCGACAGCATCTACATTTTCACCGAGAACGAGATCATTGAGTACGATGGGGAGCTTGCTGCAGACACAATTGTGGAGTTCATCTATGATGTTCTTGAAGACCCAGTTGAGATCATTGAGAACGATTCGGAGGTTAAAGGTTTCCATAACATTGAGGAGGATATCAAACTGGTTGGCTACTTTAAGAGCGAAAAGTCTGAACATTATTTGGCCTATGTGGACGCGGCTGAGGAGTTCCATCCACACATCAAGTTCTTCGCTACATTCACTCCCAAGGTTGCCAAGGATCTGGGCCTGAAGGTGAATGAGGTGGACTTCTATGAACCCTTTATAGATGAACCCATAGTTATCCCCGGAAAGCCCTACACAGAGGAGGAGCTTGTCGAGTACATCGAGGATCACGACAGACCAACCCTGAGGAAGATGGAGCCTGATAACATGTATGAGATCTGGGAGGATGACATCGATGGTGAGCACATCATTGCATTCGCAGAAGAGGATGATCCAGATGGTTTTGAGTTCCTGGAAATCCTAAAGGAAGTAGCAGAGGAGCACAATGATAATCCCAACCTCAGCATTGTCTGGATTGATCCAGATGACTTCCCGCTGCTTGTCCCATACTGGGAGAAGACCTTTGGAATTGACCTGGGCTCTCCCCAGATTGGTGTTGTGGATGTTGAAGATGCTGACAGTGTATGGATGGAGATCGACAATGATGACGACCTACCAAGCGCAGATGAGCTTGAGGAATGGATTGAAGATGTTCTTTCAGATGAAATTGATCcagatgacgatgatgatgatgacgacgatgatgatgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgatgatgatgatgatgagtaaATTGTTGATCTCATCATTTCACTGGCCTATGTCTAAATCTGGCCAATATAATAGAATTGTCCAATCACATCATCCCCTTCCTCAACTTGTCCTTGTCCTCTGTTGTAACACTTCATTAAGTTAAATATGTCCGCTCATATGGACATCCTCATGTTTTCAACATCCTTGCTCAGAGCATCTTGTCAAAATATTGTTTCATTTTTTTCACTTTGCTTTGAATCCATAAAAGACAGTACTTTCTCAGAGCCCCATTTTTTTATTCACACCACACCTGTAACTTTGCCATCCATACAATATGAAAAGGATACAAAGAATAAATTGTGAAAATAATCCTTTCAAAATACAACTATTGGATATTCATTAGCACTAAATCTTAAAACACCTGATGCTTCTGATTTGTATATTTCAAACAAATAGAGGGGTTACTTTGTGGATGCATTTTAAGTCTGAGTCCATCTGTAAACTTGTCGTctgaatgtattttatttttgttttattttctctAGATTAAATGTTCACCCCTCTCCTAACCTTGTCAAATCCAAGGGTGCAAGCAGGCTTTTCCTACATACAGGTCATGGGTCATACCAACCTACTCTGTTGAATTATTGTAACTTTAGTTGGTAAGCTTTTTTTCTTCTTGTGCACTGAAATGTGCTGTAAATCACATGGATGTTTTCTACTGACAAAGAAATATAACAACagtattcattttttttaaacaagaaaaCTTAAACATACTGTAAAGGCTTAAAATAAATGACAGCTTGGAAAAAGA

Function

NR:

description
calsequestrin-1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23468 CASQ1; calsequestrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986228.1 True 2144 mRNA 0.42 11 74697349 74712803

Neighbor

gene id symbol gene type direction distance location
LOC110530584 LOC106569421 coding upstream 163332 74530674 ~ 74534017 (+)
LOC110530582 LOC106569368 coding upstream 196227 74480507 ~ 74501122 (+)
parp2 parp2 coding upstream 258768 74431744 ~ 74438581 (+)
sdr39u1 sdr39u1 coding upstream 269207 74424447 ~ 74428142 (+)
ltb4r2b LOC106569372 coding upstream 284144 74408385 ~ 74413205 (+)
LOC110530590 LOC106569450 coding downstream 287 74713090 ~ 74717411 (+)
LOC110530985 NA coding downstream 82613 74795416 ~ 74796285 (+)
LOC110530598 LOC106569444 coding downstream 91898 74804701 ~ 74813438 (+)
LOC110530599 LOC106569443 coding downstream 109691 74822494 ~ 74843597 (+)
c8h14orf119 cssa14h14orf119 coding downstream 176402 74889205 ~ 74892644 (+)
G745920 NA non-coding upstream 2437 74694712 ~ 74694912 (+)
G745910 NA non-coding upstream 15159 74681895 ~ 74682190 (+)
G745908 NA non-coding upstream 16795 74680337 ~ 74680554 (+)
G745907 NA non-coding upstream 17806 74679330 ~ 74679543 (+)
G745770 LOC100653464 non-coding upstream 54028 74628791 ~ 74643321 (+)
G745932 NA non-coding downstream 14966 74727769 ~ 74728646 (+)
G745950 NA non-coding downstream 40485 74753288 ~ 74753974 (+)
G745967 NA non-coding downstream 67974 74780777 ~ 74782673 (+)
G745976 NA non-coding downstream 79312 74792115 ~ 74792467 (+)
G745977 NA non-coding downstream 79755 74792558 ~ 74792816 (+)
G745489 NA other upstream 976699 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 1102111 73593637 ~ 73595238 (+)
G745083 NA other upstream 1446853 73249424 ~ 73250496 (+)
G744697 NA other upstream 1828967 72867101 ~ 72868382 (+)
G744696 NA other upstream 1832646 72862256 ~ 72864703 (+)
G746052 NA other downstream 239882 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 301841 75014644 ~ 75033896 (+)
G746936 NA other downstream 614969 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 637405 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 666699 75379450 ~ 75383243 (+)

Expression


Co-expression Network