LOC110530598 (LOC106569444)


Basic Information

Item Value
gene id LOC110530598
gene name LOC106569444
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74804701 ~ 74813438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613807.2
GGTGAGTTTGAGAGAAGAAGACTTGTTGAGGGAAATTGACACATATGACTGTAGTCTTCACACGTTGTTCTCTTTTACACCAAGATGCCACCAACGGAGTTGAACATTTGTGGCGGAAAATTCACCCGCGCATCGCTTCTAATTCGGACAATTTAGTTAACTACTTTTTCAGTGTGCAGGGAGAAAAAATGAAAGCATTCTGTTGGCCCATGTGCAGCTGAAGCATGTCTCGTCGGAAACAGAAACGGCCCCAGCAGCTCATGATCCCGCTCCCTTCAGCCTCTCAGATATTAGAGCATGATGACCAGTTGGCAGTGAAGTTATCCTCCTTTCCTCTGACCACAGATTCCTCTTCttcatcatcttcctcctctcctcagagTTACCAGCCACCCCTGGCTCCACATCCCTACTTTTGGGGGCTTCACACCCGCTCTCTACCCAGTGAGGGCTCCCCCCTCTCCTGCTGCCCCTGCCAGCCCACCTCCTGCCCCATCTCCTTCACAGACCCccagtcctccctctcccctgacttcccccacccctccctcttctcccagacAGGCCTGCACCTCCCCAACACCTCCACATCGCCCTCCAGTCAGACCCACCCTCCCCGCTCTATCATGGCCTCTCCCAAACTGGGCGTGTCAGCCACCACTACcacttcctcatcctcttcctcagccTCCCTCTGCCCCCCGCCCCACCCTGGTAGCCCCAGCCCTGTGCCCGAGGGCCCTCCCAGCCCTGTGACACCCTCCCCCAGCCCGGGTGCTACCTCTGCAGCCCCGCCCCGTGCCCACCTGAGCATTGCGGTGATCCTGGATGAGCTGCGAGTGCTGCAGCAGAGGCAGATCCACCAGATGCAGATGACGGAGGAGATCTGCAGGCAGGTGCTGCGGCTGGGCGGGGCCTCCTGTGGCCTGGAGGCGCCCCAGATCCTCCTGCCTCCTTTTccccagctctgtctggagggcAGTGAGAGGGCCTCCAGTCCTCCCCAGCCTACACCCATCCAGCCTCCCAGCTCTGTAGCTCCTCTCCTGGCCTGCttctcctccctgctccctccccagCCTGCCTCCAAGCCCTCCAAGCCCAGCCACCCCCTGTCCCATGTCCTGCGGCCACACAAGACCCAGATGGAGGGTGCAGGAGGGGCTACAGGGTCTTATCTTTACCCTGGGACCAGTGTCCGCCCTTCCTCCTCGTCTTCTGCCTCCTCAGCCATCTCTACCATGGCCTCGTCCAACTACCCCCTGGCCCTCTCCCTGGCCTTGCCTACCCGTTACCTCCATGAGAAATCCCCCAACACCACCTCAGCCAGCGGCCACGGTGGCCTGTCCTTCCTCACCCCACCCCTGCCCACCACTGCCTCTATGGCACCCCCCTCCTTTCAGGAGCCccacctgtctgtctcctcatcagggtcctcatcctcctccctggGGCGTCTCCAGCATGCCTGTCGGTTCTGtgggaagctgttcagcagtgaCTCATCCCTGCAAATCCACCTGCGCTCCCACACGGGCGAGAGACCCTACCAGTGCCCTGTCTGCCTCAGCCGCTTCACCACCCGTGGCAACCTCAAGGTGCATTTCCTCCGCCACCGCGAGCAGAACCCAGagctctcgctctcccttctccccccttcCCTGTTTGGGCCGGGCATGGGACCAGCGGGGGGGTCTGAGCCCCAGGGTCAGCCCATGAGCAGCATTGGACTGAGTATCAGTGCAGCACAGGCTCAGAGACGTCGTAAACGGCGGGCTGAGGATGACCCGTATGGAGACGGTATGGAGGTGGGAGGTGCCGGAGGGGGCTTCTCTCTGGGGGCATCCACCAGtgctccccccacctctctcccccttccccccagTGTGGACCTGGCCCTCATCTCCACCGCCCACTCCCTCCTGCGGCTCAACCAAGCTGCTGCTGCAGCCGCTGCTGCATCCATAACCTCAGCTGCTTCCTCActcacatcctcctcttcctcttctgcgtcctcctccctcctctctgtcccatCCTCGTCCACCTCTGCCATCGCTGGGTTCTTCAAGGGGGCAAAGCAGCAACGCTTTGATGAGAACACGCCCCCTCACCCTCCCATGATGTCGCACTCTGCTTACTCCCAGTTGGCCCACCTCCCTAAACTCCTCTTCCCCTCTGGCTCCCCCCACCAACACCCTGCCCTGGGCCTGCTCCGCCCTCCACCCCCTGCCCAAGgctcctcccacctctcctccacccactctCAGCTCTCCTCACCCTTCTCCCACTACCCCAAAGCCCacgcctccacctcctccccctccgtCTCTACCCCCACCTCAGACACCTCCAAGCTGCAGCGGCTGGTGGAGAAGCTGGAGAAGgagcctcccacctcctctccctgggCCTCCTCCTCAGGGGAGATCTCCCACAGCAGCATGGCCTCTACTGGGTTGTTCAGTAGCGGCCTCATGGGCGCCAGCACCTCCAGCACTTATGTGATGGCAACCCCACCGTCCTCCACCCATGCCCCCACCTCTGTCTCCAACTTCACCAGGGAGATGGTGGCCGCTCTGGGCATGAGTGCAAATGGGGGCAGCGCCTTGGCAGGAGCCATGCTCCCAGGCATTGGCATCATGAGCACTGGCTCCCTGGCCTCCAACCAGTGTGGGGTGTGTCTGCGTGTGCTGAGCTGCCCCAGGGCACTGCGTCTGCACCAGGCCACCCACCTGGGCGAGCGCCCATTCCCCTGTAAACTGTGTGGACGCTCCTTCTCCACCAAGGGCAGCCTGCGGTCCCACCTGGCAACACACCGTGCCCGCCCGCCGAACTCTCGTGCCCAGAACTCTTGCCCGCTGTGCCAGCGCAAGTTCACAAATGCCCTGGTGCTGCAGCACCACATTCGCATGCACCTGGGAGGgcagctgccaccggagggcggTGCAGAGTCTCTGTCAGAGGCCTCAGCAGAGTGTGACACTATCTCTGAGCTCCAGACCCATTCCCTGGCACTGTCTCAGTCCCAGCCACAGTCCAATGACACCCCCAAGGTCTCCACTGAGAGCTCCACTGCAGCCTCAGGCAGCCAGTCAAAGAGCTCAGCAGCATCCACACACTTTCAAACCCTAGTGGGAGGCTCTGCCCCAGTATCGGTCAGTGTGACATCACCAAAGTGTGTCTGGGAGCCTAACAGATCTCACTCCTCCAGCCCTGACCTGATCCCTCCCTCTGACCTCACCCCTGACTCCTTCCTAAACTCCACCTCACACACCCCTCCGCCCGGCAGCGCAGACGCCCCAGTCCTGTTTGTCAGTGTGCcttccccaccccctcctctagGAGATACAGGCTCCCCAGTCAACGATGATAACCATGCTGAACACCTTGATTCAACCATTAGTACCATTGGCCCTGCTCCCACTTCCTCCAGTGTTACCAAAACCACCCCCTTGTCCAGTCTAATGATGTCAGACTGCCTTTTGGGTCAGCATGCCCTTCCTCTCAATGTCTTCCTCCCCGGCCCTAGATCAAACCTGGAGGATCTACTGAGCACACCAACCCTCTGTGCCCCGGTAGCACACCCAAGCCCAGCCCCCTCCTTTACCCCTGTACTTAGCCCAGAGCACCCCAAACCCCACCCAGCACCCAAACCAGACTTAGAGGACCCCCCTAAACTCCAAACCCCCAAGCCCACAGAGGAATACAGGGTTGAAACCCCCCCACCTGCAGCACCAAAGCATGACCAAGCTCTTGTATCTGATACGGACCCGAGAATGGCACCACCATCAGAGAACACAGACACAAGCGATGCTGAGGCTAGGGAAGTTCCTCAGAAAGATGTACCCTACACCAGGATGAGTCAGGGGGCGTACCTCGGCTCCCATGGGAAGGAGGATGGGATGAGTGGTGTCAGTGACCAACTGGAAAGCACTTTTCCCATCAGTTTGGCTaccactctcccccctcccctgtcTCGCCCTGAGAAGAAGACCTACAGCTGTGTCGAGTGTGGGAAAGAGTATGCCAGCCGCAGTGGACTGAAGGGACACATGAAGCATCATGGAGGGGTTGTCAAGGCACCACGTCCCCCTGTACGGAGCGGTCGCTCGGCCTCTGAGCGACTTCCTGCTAACACACCGACAACGTCCTCCAACCCCCCGGCCACCAGAAGCAATGTGGGCTTCTGGAACCAGTACCAAGCCTTCCTCAACACCAGCAACGACTCGGCAGACGACCCGGCACAAGGCCCGGCCAGTGGTAGCcaaggagaggatggggagatgcCCCGATTGGCTAAATCTCCCGTTAGATCCCAGCTGTCGAAAGAACCAACCACTGGAAGGGGTTCAGAAGATGGGTCTGACGAAGGGTCTACTCTAGAGTCAATGTAATTGGTGCTATCAATGGACATTCACTGTACCTTTGAGTCAAACCGTAGGGACTTTTGTATTGTATTGCTTCCAAATTCAGTTGAGTAGTCTGTCGGGTTTGTTGTCTGTGAGTAAGTTGCTTAGTTAATTTGTGATAACTGTAAGTTGGCCATCCTGGCCTTTTCTTTTAAAAAAGGAGAAAGTTGAAGGATGCAAAAAACATGACATAACTACAGGATTGGAAGATTGAGGAGGTCAGAAGTCACTGTTAAGACAATAAGAGTTGGAGCTGGGCTCTAAAATGAGAGCTCTGTTAGGCAAAGAGCTCTACTCTAGATTTAGGGCTAATTTTCCTGAACAGTCTGACTCACTGTTTATGTGATAGATATCAACTCAGATAAAGAGATGTATTGGAAAAGGTAAGGTAGAGAGGATGTGATATTGTTCTCACATAAACAATTCCTTCATTCAAACATAAAAGGGAAAAGGAGGTGAAACAGAATGGTACGGGTCCCTAAACTAAACTTGACATGGTAGCTTCAGCCCTGGCAGTCTATGGAGATGCAGTCTCTCATCCTACTACCGTATAAAACCTCATCTTTCATGTCATCTGGGTTTACTTTTGAACTTGTGAATACTCCAGACTCTTCCTCCAGCTGATTTACAGAGAAGCACAGAGGAGTGGGTGTTGTGGTGTGCCAGGTGGAGAAAGAAATGGACAGACAGTTTCCTGTGTGACCCATTTTCCTTTGGATTTTTTGAATAAGCTGATTGTCGTTTGGTCTCACAGTGATGTCCGTTCTCTGTAACTCGTTGTCTTTGGTTCATGTTGTATCtttataacaaaacaaaaaaaatcagagGTCCATGTCTGATATTGTTGTGAGTTGTACTTTCAGTGTATTCCTGTGAAATAAGAGGgataaaaaaagacaaaaaagctcttattttttgttgttgttgttgactgtggCTGTTTTATTTGTTTTGGATCTCTATTGTGCCTGTTCTACATTCTCCTGTAGAGCTGTTTTATTTGTTTTGGATCTCTATCGTGCCTGTTCTACATTCTCCTGTAGAGCTGTTTTgatatttgtttatttgtcacacactGCTGTTAGTGACACCAAAACAATGGCACATGCACAAACATGCCAGATGCACACAGCTGTTTTGTGCATATCGTAAGTGTGCATTTGGCTATTTTTTTGTGcaagtgggtgtgtgtttgtgtgtgtgagcgcgctAGATATGTGTACGTATGTGcctatgtgcgtgtgtgttggcaCAGCAGTGTGtagccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttataattttaaaaggcta
>TU846817
CAGCTGTTTTGTGCATATCGTAAGTGTGCATTTGGCTATTTTTTTGTGcaagtgggtgtgtgtttgtgtgtgtgagcgcgctAGATATGTGTACGTATGTGcctatgtgcgtgtgtgttggcaCAGCAGTGTGtagccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttataattttaaaaggctaactgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgttctgattgaagaagcaatacaactggccttctttagaatatgtgagtatctggagcatcagcatttgtgggttcgattgcaggctcaaaatggctagaaacaaataactttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcaagacattgccaaggaactgaagatctcgtacaacgctatgtactactccattcacagaacagcgcaaagggtctctaaccagaatagaaagaggagtgggaggccccagtgcacaactgagtaagaggacaagtacattagagtgtctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaatagtacccgcaaaacaccagtctcactTCAACAGTGAAGCGGTGACTCCGGgagctggccttctaggcagagttgcaaagaaaaagccatatttcaGACTGGCCAAATTGACACTCGTCAATATATGTtcataaataaaaaacatttttattcagAAGCAAACTACCGTAGGTTGAAAATTACTTTGCATATGGAAGCATTTTTAGTGTCTTGAAATTTGTTGAAGGCATTTTTCCATTTAATGTTTTGACAAATAGCTAGTTAAAGAATCAATCAAAAGTCATAGAGGGAAAAACAGTGGCTTGTTGTCATGATGGAGGAACTGCACTCTGGATAGAGACGTTTGGCCAACTGCTGTTAGTTAAGGgtttgcaagtaagcatttcacggtaaagtctacacttgttgtatttggcacacgtgacaaataaagtttgatttgatttaagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613807.2 False 5743 mRNA 0.56 3 74804701 74812569
TU846817 True 1071 lncRNA 0.40 1 74812368 74813438

Neighbor

gene id symbol gene type direction distance location
LOC110530985 NA coding upstream 8416 74795416 ~ 74796285 (+)
LOC110530590 LOC106569450 coding upstream 87290 74713090 ~ 74717411 (+)
LOC110530591 LOC100196652 coding upstream 91898 74697349 ~ 74712803 (+)
LOC110530584 LOC106569421 coding upstream 270684 74530674 ~ 74534017 (+)
LOC110530582 LOC106569368 coding upstream 303579 74480507 ~ 74501122 (+)
LOC110530599 LOC106569443 coding downstream 9925 74822494 ~ 74843597 (+)
c8h14orf119 cssa14h14orf119 coding downstream 76636 74889205 ~ 74892644 (+)
homeza homez coding downstream 145621 74958190 ~ 74964449 (+)
nedd8 nedd8 coding downstream 219357 75014644 ~ 75033896 (+)
LOC110530986 LOC102210751 coding downstream 271898 75084467 ~ 75085636 (+)
G745977 NA non-coding upstream 11885 74792558 ~ 74792816 (+)
G745976 NA non-coding upstream 12234 74792115 ~ 74792467 (+)
G745967 NA non-coding upstream 22028 74780777 ~ 74782673 (+)
G745950 NA non-coding upstream 50727 74753288 ~ 74753974 (+)
G745932 NA non-coding upstream 76055 74727769 ~ 74728646 (+)
G746008 NA non-coding downstream 28438 74841007 ~ 74841341 (+)
G746012 NA non-coding downstream 40289 74852858 ~ 74853979 (+)
G746014 NA non-coding downstream 42140 74854709 ~ 74854939 (+)
G746041 LOC100380853 non-coding downstream 126144 74938713 ~ 74938952 (+)
G745489 NA other upstream 1084051 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 1209463 73593637 ~ 73595238 (+)
G745083 NA other upstream 1554205 73249424 ~ 73250496 (+)
G744697 NA other upstream 1936319 72867101 ~ 72868382 (+)
G744696 NA other upstream 1939998 72862256 ~ 72864703 (+)
G746052 NA other downstream 140116 74952685 ~ 74953842 (+)
G746936 NA other downstream 515203 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 537639 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 566933 75379450 ~ 75383243 (+)

Expression


Co-expression Network