LOC110530986 (LOC102210751)


Basic Information

Item Value
gene id LOC110530986
gene name LOC102210751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75084467 ~ 75085636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614269.2
ATGGCTTTACAAGACGTCAGTGGCTTTCAGGACACCCCTATGTCTCACATGTGGAACAGTCCTGCCTCACTATCTGGGCCTATGGGAGATACCACTCCTCTCCTGGACATGGCTGATGAAAGGATCCTTGGTTGGGGAAGGTTTAAATCatctgagagagatggaggggtccCTTTGCGCTTTTTCATACCTCCTCCTCAGAGCTCTGTTCCTTTCCGCTGTGACAACAGACACACGTCCCTTTCTTCCCTGTCCACCTCCTCATCACCACCCACCCGCCGCCCATTCCCTTTGTCTCATGGAACCACTACCCTGGCCTTTGTGTTCCAAGGAGGTGTTATAGCAGCGGCAGACACACGTGCCAGCTGCTCAGGGCTTGTCGCCTGTCCCTCTGCCCAGAAGATCCTGCCCATCCACTCCCATTTACTGGTCACCACTTCAGGCAGTGGTGCAGACTGCATGCTATGGGAGAGAATCCTGGCCAGAGAGATCCGCCTTTACCAGCTACGCCACGGCCGCCGCTTGTCAATTACTGGTTCTGCCAAGCTCCTCTCTCATATGCTGCACCCCTTTAAGGGGACTGATGTGTGTGTGGCAGCCACTCTTTGTGGCTGGGATCGTTGTGGCCCAAAGCTGTTCTATGTGTGCAGTGATGGCACCCGGCTGCAGGGAGAGCTCTTCTCGGTTGGCTCAGGTTCGCCTTATGCTTACGGAGTGCTGGATGGAGAGGTGCGGTGGAGCCTGAATGAGGAGGAGGCTATCTCATTGGCCAGAGAAGCTGTGTACAgggccacacacagagatgcatattCGGGGAACTGTGTGGACCTTTTCCACATCACTGCCCAAGGATATTGCCGAAGAGACAGGGAGGATCTGAGAGAGGAGtaccacagagagagggagagggtgctGAAGAGGGGAAAAGAAGAGAGTGAGGAAGATAAGAAATAG

Function

NR:

description
proteasome subunit beta type-11-like

GO: NA

KEGG:

id description
K11598 PSMB11; 20S proteasome subunit beta 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614269.2 True 954 mRNA 0.55 2 75084467 75085636

Neighbor

gene id symbol gene type direction distance location
nedd8 nedd8 coding upstream 50648 75014644 ~ 75033896 (+)
homeza homez coding upstream 120018 74958190 ~ 74964449 (+)
c8h14orf119 cssa14h14orf119 coding upstream 191823 74889205 ~ 74892644 (+)
LOC110530599 LOC106569443 coding upstream 240870 74822494 ~ 74843597 (+)
LOC110530598 LOC106569444 coding upstream 271898 74804701 ~ 74813438 (+)
psmb5 LOC106569426 coding downstream 3140 75088776 ~ 75096658 (+)
LOC110530987 LOC106569478 coding downstream 65783 75151419 ~ 75357954 (+)
LOC110530620 LOC106569477 coding downstream 302991 75388627 ~ 75444838 (+)
LOC110530623 LOC106569476 coding downstream 405199 75490835 ~ 75522652 (+)
tgm1l1 tgm1 coding downstream 459288 75544924 ~ 75566032 (+)
G746080 LOC106569427 non-coding upstream 12101 75070646 ~ 75072366 (+)
G746089 LOC106569429 non-coding upstream 36150 75047164 ~ 75048317 (+)
G746064 NA non-coding upstream 112381 74971869 ~ 74972086 (+)
G746060 NA non-coding upstream 115141 74969072 ~ 74969326 (+)
G746058 NA non-coding upstream 117498 74966425 ~ 74966969 (+)
G746830 NA non-coding downstream 59357 75144993 ~ 75145223 (+)
G746833 NA non-coding downstream 64574 75150210 ~ 75150519 (+)
G746905 NA non-coding downstream 173891 75259527 ~ 75259816 (+)
G746906 NA non-coding downstream 175049 75260685 ~ 75260950 (+)
G746052 NA other upstream 130813 74952685 ~ 74953842 (+)
G745489 NA other upstream 1363817 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 1489229 73593637 ~ 73595238 (+)
G745083 NA other upstream 1833971 73249424 ~ 73250496 (+)
G746936 NA other downstream 242136 75327772 ~ 75328195 (+)
G746951 LOC106591969 other downstream 293866 75379450 ~ 75383243 (+)
G747680 NA other downstream 1030057 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 1154314 76239950 ~ 76394329 (+)

Expression


Co-expression Network