Gene
RNA
| Item | Value |
|---|---|
| gene id | psmb5 |
| gene name | LOC106569426 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 75088776 ~ 75096658 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| proteasome subunit beta type-5-like |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02737 | PSMB5; 20S proteasome subunit beta 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021613832.2 | True | 1233 | mRNA | 0.49 | 3 | 75088776 | 75096658 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530986 | LOC102210751 | coding | upstream | 3140 | 75084467 ~ 75085636 (+) |
| nedd8 | nedd8 | coding | upstream | 54957 | 75014644 ~ 75033896 (+) |
| homeza | homez | coding | upstream | 124327 | 74958190 ~ 74964449 (+) |
| c8h14orf119 | cssa14h14orf119 | coding | upstream | 196132 | 74889205 ~ 74892644 (+) |
| LOC110530599 | LOC106569443 | coding | upstream | 245179 | 74822494 ~ 74843597 (+) |
| LOC110530987 | LOC106569478 | coding | downstream | 54761 | 75151419 ~ 75357954 (+) |
| LOC110530620 | LOC106569477 | coding | downstream | 291969 | 75388627 ~ 75444838 (+) |
| LOC110530623 | LOC106569476 | coding | downstream | 394177 | 75490835 ~ 75522652 (+) |
| tgm1l1 | tgm1 | coding | downstream | 448266 | 75544924 ~ 75566032 (+) |
| LOC110530628 | LOC106569474 | coding | downstream | 499032 | 75595690 ~ 75609631 (+) |
| G746080 | LOC106569427 | non-coding | upstream | 16410 | 75070646 ~ 75072366 (+) |
| G746089 | LOC106569429 | non-coding | upstream | 40459 | 75047164 ~ 75048317 (+) |
| G746064 | NA | non-coding | upstream | 116690 | 74971869 ~ 74972086 (+) |
| G746060 | NA | non-coding | upstream | 119450 | 74969072 ~ 74969326 (+) |
| G746058 | NA | non-coding | upstream | 121807 | 74966425 ~ 74966969 (+) |
| G746830 | NA | non-coding | downstream | 48335 | 75144993 ~ 75145223 (+) |
| G746833 | NA | non-coding | downstream | 53552 | 75150210 ~ 75150519 (+) |
| G746905 | NA | non-coding | downstream | 162869 | 75259527 ~ 75259816 (+) |
| G746906 | NA | non-coding | downstream | 164027 | 75260685 ~ 75260950 (+) |
| G746052 | NA | other | upstream | 135122 | 74952685 ~ 74953842 (+) |
| G745489 | NA | other | upstream | 1368126 | 73719716 ~ 73720650 (+) |
| G745410 | LOC106569417 | other | upstream | 1493538 | 73593637 ~ 73595238 (+) |
| G745083 | NA | other | upstream | 1838280 | 73249424 ~ 73250496 (+) |
| G746936 | NA | other | downstream | 231114 | 75327772 ~ 75328195 (+) |
| G746951 | LOC106591969 | other | downstream | 282844 | 75379450 ~ 75383243 (+) |
| G747680 | NA | other | downstream | 1019035 | 76115693 ~ 76115986 (+) |
| G747987 | cah12 | other | downstream | 1143292 | 76239950 ~ 76394329 (+) |
