LOC110530987 (LOC106569478)


Basic Information

Item Value
gene id LOC110530987
gene name LOC106569478
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75151419 ~ 75357954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986260.1
GATGACCTGAAACATAGTGGTGAACTGTTAGTCAGAGAGAGACggccagagaaagaaagagcgagagtgTACGTGATGAGAGATTTTAAGACAGCCGTCTTattatttgagagagagagagagagagagagagagagagagagagagagatatgcgaTAACAGCGTTTGCCCTGTTCACATTTGACTCAGTTCTTCTCACGAGAGACATGCAGATACAACGACACACCAGAAACTTCAGACAGCTCCTTAAAGACCGAACTCTGAAGGTTGCTCAACCCTCCGTGGAACACTGAATGAGACGTTCTGCAAGAGGGGAAAAAACAGCAGAGAGGAGCCGTGAATAGATAGAGATTTTTTGTGGGAAGGGCACCTGCCCTCCAGCTTAGTGTGAAGGGCATGTAATGGAAGAGTGAGAGGAGGATACAAggaaagagaaatagaggagagaatGAAGACAACTGGAAAACAAGTACTTCCTCACAGCAAGTGTCACTCAAATTAGCTAATCTCACCACAAGCCAAGATGATTACCAGGAATCTGCTCCTATTGGTCTCCCTATGTCTGTGGGAGGGGCTTATGAGAGAAGGTTCAGCCACTAAGATCATCAGGAGAAGAGGGGTGGGCGGGGTTCACTTGCTGAAGTTAGGGGAGAACAGAGTAGCCGACCAATGGGATTCAAGTGTGGATTCAAACGTGATGCCAATGGTGACTCTTAGAAACTTGATTGGTCATGACCATGGTGTTGATAGTGGCTCCAAAATACCCCAGAATAATGCAGCCATAACAGCTAATAAGGAGAGGGAGACTTTTAAACCTAATCCCGTGTTAGACTTGGAAGAAGACCCTGTCAAAAAAGGGGAGTCAACTCTGTCTGTGTCACTCAATGACAGGGAAGCCATCCAGGAGAAAGGGCTTAGAAAGAGTAGGAACAGCACCAAAAACGCTGAAAATCCCACCAAGACAGGGAAGATGGAGAAAGTATTCTTAGTCCAACACAGGCTAGACATGCACTCCAATAAAACCAGATTCAAATCCCTTCCCCGATCCAGAGTCAGATCAGACCTGAGCGTTCACACCACAGGGCTGCCAGGCAGAGGACTCACTAAGGATTCAACAAGAAACTTAAACCCAACCGGCAGCTACGGTGTCCTGAAACTACTGTCCAAAGAGAACCTGGTGAGGATTGTGAACTCACAGATTCAGAGCAAGAGCAGCCGAAGCAGAAAGAGAGATTTGATTGATGTGGATCGCAGCCAGTTGGAGGCCCTGAAATTACCAAAGCAAGATATGGCTGTCACCCAAAACCATTTCACATTGGATAACCAAACTGCTCTGCCACATGTAAGCGCTGTCACAAATGCTGATTTCAGTCCAGAAGAGGCTGTTGACACTTTAAGTGTAGCCACTCCAGATTCTGGTGTGGGAAAAGACAACTCTGAGATGAGGGGTTCAGATAGCACAGACACCTGGATGAACAAGCACATCTCTCACCCTCTGTCACTGCCTATGAATGAGGTCAGTCTCAACACTGAGAGCGAGGTGACCAACAGTCAGACTGACCCTCCAGCCACGACCAAGCATCTCCCCTCAAACGTCCCTTCTCAGACAGATGCTGGCCATCCATCAGTGTTCACCCTGCAGCCCCAGAGAAAGGGGATTCAAGATTTCGAGGAGAGCCTTCTTCACACAGCCGGACCACGACTCAAGATCCTGAGTCCAAGTGCCACTCAAGACCCTGTAGTTGGCGCGACAGAGTTAATTAATAGCAGCCATGTCCTCAAACTCCGCCCAGACCCATACTGGGGGGTCAGCCAGGACAAGGCAGCCAGTGGGGTGATGACAGTCGAGTCCGAGCCCGGTAATGGCTGGGGCCTGGTGTTCCAAGAGGCAGAgtcagatgaggaggaggaagaggggccTGGTCAGACGGGGGGGGAGGGGACTCGGTCCCGCAGCAGAAGGAGTTGGATCTGGAACCAGTTCTTTGTAATTGAGGAGTACAGCGGGCCGGAACCTGTGCTCATCGGAAGGctgcACACTGACATGGACAGAGGTGATGGACGCACCAAGTACTTGCTGCGTGGTGAGGGGGCGGGGTCGGTGTTTGTGATTGACGAGAAAACAGGCAACATCCATGTCACCAAGCCCCTGGATCGTGAGGAGAAGGACGAGTACCGCCTCATCGCTACAGCAACCGACCGGCAGACCGACCGGGCCCTGGAGCCATCATCCACGTTCATCATCAGAGTACAGGACATCAACGACAACCCCCCTCTGTTTGAAGAAGGGCCCTACAGCGCCACCGTGCCTGAGATGGCCAACATAGgtACTTCTATAATCCAGGTGACAGCGACAGATGCTGACGACCCAACCTATGGGAACAGTGCCAGGCTGGTGTATACACTTGTGCAGGGACAGCAGTTCTTCTCTGTGGACCCACAGACAGgTATCCTGCGTACAGCAGTGCCTGATATGGATAGAGAAACCCAGGACCAATACCTGGTTGTCCTGCAGGCCAAGGACATGGGGGGACATCTGGGAGGTCTTTCAGGGACCACTACTGTCACTGTCAGGCTGAGTGACGTCAACGACAACCCTCCTCGCTTCACCCAGAgtaTGTGGTCCTTCTCTGTGTCAGAGCTGGCTGTTCTGGGGGCGGAGGTGGGCCGTATCTCAGCAACAGACGCTGACCTAGGCGACAATGCCAAGCTGGAATATACCGTCCTGGAAGGAGAGACGGGGGACACCTTCAACATCAGCGGAACAAACCAAGAGGCCGTGATCACCCTGAACAAGgctgtaGACTATGAGAGTCGTAGCTCCTACTCCTTCTCCGTGGAGGTGTTGAACCCTATGGTGGACTCTCGGTTCCTGCGCCGTGGGCCCTTTAAGGACCGCGCCTCCATCAGGGTGGCTGTGCTGGACGCTGACGAGCCGCCTCGTTTCTCCCGGACGCACTACCGGATGGACGTGTCCGAGAACTGCCCTCCCGCTTGCACTGTGGGAAGGGTTAGTGCTGTGGACCCTGATACTGGACTCACCAACAACATCAGatTCTCTATTGATCCCCAGTCAGACCAGGAGGCTCTGTTTCGTATCACTGCAGACAGCGGCCTCATCACCACGGTAATGGAGCTGGACCGTGAGCGCGAGCAGTGGCACAACATCACCGTCATCGCCATGCAGAGAGACAACCCCAGCCAGGTGTCCAGAGTGGTGGTTGCCATAGAGACGCTGGACTTGAATGACAATGCGCCCGAGCTGGACAGACAGTACACAGCAGCCATGTGTGACTCATCAGCCACTGGACAGGTGGTGCAGGTGTTGCGTGCCATTGATCGAGATGAGGGAGGGAATGACAGTGCTGTATATTTCAACATCCCTCCAGAGTCCAGCTTCGCCCTCAACTTCAGCATTAGGGACAGTGGAGGCCCCAGTGCCACCCTGTTGCTCCTGTCGCCCCTGCAgcccctctcccactccttctcctcctccctcacgcTACACGTTCCCCTGGTGTTAAGGGATGGGACGTCTGGCCTGACCTCCACCGGGACAGTCACTGTGTCCATCTGCCCCTGCCTGAGAGGAGGGGCCCGGgctggggagaaggagagacaggagaggcagacggagggagactgggagtgggagagagagacggtgtgtgtccCACAGCAgtctacctccccctcccctgGGCTCAGCACTGCCGCCCTGCTGGCCATCTTGGCCTGTGTTGCCACTCTGCTGGCAGTCAgtgccctgtccctgtccctgcgtCGTCAGAAGCGggactctctgtctcccctggaGGAGGACGATGTTAGGGAGAACATCATCACCTACGATGACGAGGGAGGAGGCGAGGCCGACACGGCCGCCTTTGACATCGCAGCGCTCCAGAGCGCCCCCCACAGCTCACGCAGGGGATACCGCACTCTGGACAGCAGgaacatACGCTACTCCCAGCACGTCCAGGACAAGGCCCGTGCATACAACTGGGCCCAGAACCCAGCCCTGGACCCGGCCTACTCCGGCCCTGGGAGGCCCCTGTACGGCCGCCTCTGCTACAGCAGCCACACCCTGCCAGTTCTCCGACGTACTCCAGGGGGCCAGTTTGAGCCAGGCTTGGCTGAGCTGGCCTACCACTTCCCTGGGGGCCACCCAGACCACTCTCTGGTCATCCAGAATCAGGGGGCCATGGTGGGGGCCCTGGAGCCAGGGGCCGTGTACGTAGGACCAGCTGAAATGAGcagcagagagagtagagacggaACAGGCCCACAGAGCGGGGTTAGCACCTCAGATGGAGGGACGCCACGGACCAATAACAGCcaggagaggggtgaagggggAGGAGCTATGAGCAACTGTACAGAGAACAGTAGTGAGCAGCAGAGCCACAGTCAGGATTTGGTGGACTGGGTCCAGTCTGAGACCCCCCCCCGAGAGAGGGAGCACACCCTGGTCCTGACACGTTCCGGCTCCATGGCTGGCCAGAGTCACGGTGGCGCCTGGGTGTGTGATTCAGCCACCCTGCCCATGGCGGGTCGCAGGGCCTTCCACGCCGGCCTGTCCCCCAAACGCACTGGCTCTGGTTCAGCTGAACCAGAATCCTCTGGTGGTGGATGTGGTGGTGGAGGGCCTGGAACCAACTGCCCAGATGGCCAGTCTCAGCAGTCAGCCGCCCGCAACTACGCCAGCATCCTGCAGGGGGAGGCAGCGGGACAGAGGCAGGATTACCCCGGGAGCCTGGGGAGGGGAGGGCTAGAGATGGGAAGCAACTTTGTGGTGGCCAGGCCGGACAGGGAGGGTGGAGGAATATCTCTGACCGGGACTTCTTGCGGGGGGATGTACCCAGAAGGGTTCATGGCTGACTGGCGGGACAGGGTGGGTATGGGGGCATACGTTTTAGGAAGGAGGGATATGACCCCCCAGATGCTGCCCTTCCCAGGTCAGGCCAGGGGCGCATACGGGGGCATCATGGGGTACGGGGCAGGGTGGGTCCaagggatggaggcagggagagggggtcCAGTACCAGGTGGTCACTCCTTGGCCCTCAGGGTGGGTGAGTTCCTCCGCCTGCGTCTGGCTCAGGTCACCTTTGACCCCTCACAGCCGCCCTATGATTCAGTGCAGGTGTACGGGCTGGAGGGTACAGGGTCACGTGCAGGCTCCCTCAGCTcactagagagtgagggagagaaggatgcagagaaggaggagtggggaggagggctGGAGGAGTGGGGTCCACAGTTTCAGGAACTAGCCAAGCTGTTCCATGATAGGGAGAAAGATAaagtggaggagaaggaggtagagaacAACAAAAAAGAGGATgcaaaagaggagggggagaaagaggagcacTCTGGAGATGAGAAGAACGactgagagggagaaggaaaaggATAGAGAATGAAGGAGGGGTAAAAGGCAAGCAGAGCTAGAGTAATGGGAGGAGAagttaaaggagagagagatgaagagggagagtaataaagagacagagaaaaatgtGCCATGGGAAGGTGAGGGCATGGGAGGAAAGGT
>TU847830
gaaagagcgagagtgTACGTGATGAGAGATTTTAAGACAGCCGTCTTattatttgagagagagagagagagagagagagagagagagagagagagatatgcgaTAACAGCGTTTGCCCTGTTCACATTTGACTCAGTTCTTCTCACGAGAGACATGCAGATACAACGACACACCAGAAACTTCAGACAGCTCCTTAAAGACCGAACTCTGAAGGTTGCTCAACCCTCCGTGGAACACTGAATGAGACGTTCTGCAAGAGGGGAAAAAACAGCAGAGAGGAGCCGTGAATAGATAGAGATTTTTTGTGGGAAGGGCACCTGCCCTCCAGCTTAGTGTGAAGGGCATGTAATGGAAGAGTGAGAGGAGGATACAAggaaagagaaatagaggagagaatGAAGACAACTGGAAAACAAGTACTTCCTCACAGCAAGTGTCACTCAAATTAGCTAATCTCACCACAAGCCAAGATGATTACCAGGAATCTGCTCCTATTGGTCTCCCTATGTCTGTGGGAGGGGCTTATGAGA
>TU847837
GTTAAGGTTAGACATAATTACTTCCTTCTTGATTTGAGAGGTTTTATCTAGCAGAGCCTATTTGTTTGTTTTGAGGTAAATGCTGAGGGCACACAGGGATGTGAACGGTAGTTAAAGTCACGCGTTGTTACAAAATAATCTTTATTTTCTCTATTCTTTTCTCTATTCTTTTCTCTATTATTTTCTCTATTATTTTCTATATTCCTTCCCCCTCCTATCTTGTTGACCTCTCCAATGCTATCTTactattttctctctcctctctcactcctctcctccttcctccccaaTCCTCCCATCACAACTCCTTTTCTGTTTCtggtttctcactctctcttcttttcAGGTGGTGCAGGTGTTGCGTGCCATTGATCGAGATGAGGGAGGGAATGACAGTGCTGTATATTTCAACATCCCTCCAGAGTCCAGCTTCGCCCTCAACTTCAGCATTAGGGACAGTGGAGGCCCCAGTGCCACCCTGTTGCTCCTGTCGCCCCTGCAgcccctctcccactccttctcctcctccctcacgcTACACGTTCCCCTGGTGTTAAGGGATGGGACGTCTGGCCTGACCTCCACCGGGACAGTCACTGTGTCCATCTGCCCCTGCCTGAGAGGAGGGGCCCGGgctggggagaaggagagacaggagaggcagacggagggagactgggagtgggagagagagacggtgtgtgtccCACAGCAgtctacctccccctcccctgGGCTCAGCACTGCCGCCCTGCTGGCCATCTTGGCCTGTGTTGCCACTCTGCTGGCAGTCAgtgccctgtccctgtccctgcgtCGTCAGAAGCGggactctctgtctcccctggaGGAGGACGATGTTAGGGAGAACATCATCACCTACGATGACGAGGGAGGAGGCGAGGCCGACACGGCCGCCTTTGACATCGCAGCGCTCCAGAGCGCCCCCCACAGCTCACGCAGGGGATACCGCACTCTGGACAGCAGgaacatACGCTACTCCCAGCACGTCCAGGACAAGGCCCGTGCATACAACTGGGCCCAGAACCCAGCCCTGGACCCGGCCTACTCCGGCCCTGGGAGGCCCCTGTACGGCCGCCTCTGCTACAGCAGCCACACCCTGCCAGTTCTCCGACGTACTCCAGGGGGCCAGTTTGAGCCAGGCTTGGCTGAGCTGGCCTACCACTTCCCTGGGGGCCACCCAGACCACTCTCTGGTCATCCAGAATCAGGGGGCCATGGTGGGGGCCCTGGAGCCAGGGGCCGTGTACGTAGGACCAGCTGAAATGAGcagcagagagagtagagacggaACAGGCCCACAGAGCGGGGTTAGCACCTCAGATGGAGGGACGCCACGGACCAATAACAGCcaggagaggggtgaagggggAGGAGCTATGAGCAACTGTACAGAGAACAGTAGTGAGCAGCAGAGCCACAGTCAGGATTTGGTGGACTGGGTCCAGTCTGAGACCCCCCCCCGAGAGAGGGAGCACACCCTGGTCCTGACACGTTCCGGCTCCATGGCTGGCCAGAGTCACGGTGGCGCCTGGGTGTGTGATTCAGCCACCCTGCCCATGGCGGGTCGCAGGGCCTTCCACGCCGGCCTGTCCCCCAAACGCACTGGCTCTGGTTCAGCTGAACCAGAATCCTCTGGTGGTGGATGTGGTGGTGGAGGGCCTGGAACCAACTGCCCAGATGGCCAGTCTCAGCAGTCAGCCGCCCGCAACTACGCCAGCATCCTGCAGGGGGAGGCAGCGGGACAGAGGCAGGATTACCCCGGGAGCCTGGGGAGGG
>TU847831
gggggtcCAGTACCAGGTGGTCACTCCTTGGCCCTCAGGGTGGGTGAGTTCCTCCGCCTGCGTCTGGCTCAGGTCACCTTTGACCCCTCACAGCCGCCCTATGATTCAGTGCAGGTGTACGGGCTGGAGGGTACAGGGTCACGTGCAGGCTCCCTCAGCTcactagagagtgagggagagaaggatgcagagaaggaggagtggggaggagggctGGAGGAGTGGGGTCCACAGTTTCAGGAACTAGCCAAGCTGTTCCATGATAGGGAGAAAGATAaagtggaggagaaggaggtagagaacAACAAAAAAGAGGATgcaaaagaggagggggagaaagaggagcacTCTGGAGATGAGAAGAACGactgagagggagaaggaaaaggATAGAGAATGAAGGAGGGGTAAAAGGCAAGCAGAGCTAGAGTAATGGGAGGAGAagttaaaggagagagagatgaagagggagagtaataaagagacagagaaaaatgtGCCATGGGAAGGTGAGGGC
>TU847832
TCAGGAACTAGCCAAGCTGTTCCATGATAGGGAGAAAGATAaagtggaggagaaggaggtagagaacAACAAAAAAGAGGATgcaaaagaggagggggagaaagaggagcacTCTGGAGATGAGAAGAACGactgagagggagaaggaaaaggATAGAGAATGAAGGAGGGGTAAAAGGCAAGCAGAGCTAGAGTAATGGGAGGAGAagttaaaggagagagagatgaagagggagagtaataaagagacagagaaaaatgtGCCATGGGAAGGTGAGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986260.1 False 5564 mRNA 0.56 14 75151419 75357954
TU847830 False 530 lncRNA 0.46 2 75151473 75239468
TU847837 False 1799 TUCP 0.59 5 75350208 75357157
TU847831 False 517 lncRNA 0.54 1 75357424 75357940
TU847832 True 281 lncRNA 0.46 1 75357660 75357940

Neighbor

gene id symbol gene type direction distance location
psmb5 LOC106569426 coding upstream 54761 75088776 ~ 75096658 (+)
LOC110530986 LOC102210751 coding upstream 65783 75084467 ~ 75085636 (+)
nedd8 nedd8 coding upstream 117600 75014644 ~ 75033896 (+)
homeza homez coding upstream 186970 74958190 ~ 74964449 (+)
c8h14orf119 cssa14h14orf119 coding upstream 258775 74889205 ~ 74892644 (+)
LOC110530620 LOC106569477 coding downstream 30673 75388627 ~ 75444838 (+)
LOC110530623 LOC106569476 coding downstream 132881 75490835 ~ 75522652 (+)
tgm1l1 tgm1 coding downstream 186970 75544924 ~ 75566032 (+)
LOC110530628 LOC106569474 coding downstream 237736 75595690 ~ 75609631 (+)
LOC110530629 LOC106569473 coding downstream 255986 75613940 ~ 75618260 (+)
G746833 NA non-coding upstream 900 75150210 ~ 75150519 (+)
G746830 NA non-coding upstream 6196 75144993 ~ 75145223 (+)
G746080 LOC106569427 non-coding upstream 79053 75070646 ~ 75072366 (+)
G746089 LOC106569429 non-coding upstream 103102 75047164 ~ 75048317 (+)
G746064 NA non-coding upstream 179333 74971869 ~ 74972086 (+)
G746835 NA non-coding downstream 630 75358584 ~ 75359767 (+)
G746839 NA non-coding downstream 2267 75360221 ~ 75362190 (+)
G746840 NA non-coding downstream 4887 75362841 ~ 75363573 (+)
G746836 NA non-coding downstream 5796 75363750 ~ 75368229 (+)
G746951 LOC106591969 non-coding downstream 21496 75379450 ~ 75383243 (+)
G746052 NA other upstream 197765 74952685 ~ 74953842 (+)
G745489 NA other upstream 1430769 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 1556181 73593637 ~ 73595238 (+)
G745083 NA other upstream 1900923 73249424 ~ 73250496 (+)
G747680 NA other downstream 757739 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 881996 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 1093616 76451222 ~ 76453376 (+)
G748432 NA other downstream 1348776 76706730 ~ 76708278 (+)
G746938 NA non-coding upstream 6708 75343104 ~ 75343500 (+)
G746937 NA non-coding upstream 13835 75336034 ~ 75336373 (+)
G746935 NA non-coding upstream 26025 75323967 ~ 75324183 (+)
G746933 NA non-coding upstream 30236 75319612 ~ 75319972 (+)
G746906 NA non-coding upstream 89258 75260685 ~ 75260950 (+)
G746936 NA other upstream 22013 75327772 ~ 75328195 (+)

Expression


Co-expression Network