tgm1l1 (tgm1)


Basic Information

Item Value
gene id tgm1l1
gene name tgm1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75544924 ~ 75566032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613837.2
TAACGGTGACTGGAGGGGCGGGGGAGGGGAGGTTTGAAGCAGAgggtgtgtcaaatcaaatgccGTTTGCATTCCTTAGGAGTGTATAAACCAGTATCTAAGACGCGTATGTAAGAGACATAGGAACTGAATGCCAGGAGACCGGTCGACGGTGAGTGGTTCTGTTGTGGGCCGTTTCCATGGCGTCGCCCCGACCACAGTGCAGATAACCAACCAGAAGGAGGCGGAGTCTAATTCTAAGAAGCAGGGAGGCTGTCGCCGTTGGTTTCAGAAGATGTGCCCCTGCTGCTGTCGACGCCAGAGCAGCTCGTATGACATCACAGACACTGTCATCACGGATGACGGGGTGAAACCAACCACGCTCCCCGAGCCTCCTCAGCCCCACACTGGAGACAACGAGCTGGAAGAACTGATGTTGTCGGTGCGCTCGGTGGATCTACTGAGCTCTAAGACGGGTCAGAACCGCCTGGAGCATCACACCAACCTTTACCATGGCAATGAGCTCATCATCCGACGTGGCCAGACGTTCCAGATGGAACTGGACCTGTCGCGACCTTTCAACTCCAACACAGACAAACTCCACCTGGAACTCAAGACAGGACCCGTCCCCATGGTGTCTAAGGGCACACACATCATAATTAAATTGGTGGAGGAACTGGAGGACAACAGCTGGGAGGCTAAGATCGTGAAGCAGAACGGCAACAGGATCAAGCTGTCCGTAAACTCGCATCACAAAGCCGTGATTGGCCAGTACAAGCTCACTGTGATGGTGAAGTGCCCTAAGCAGGAGGTGGCCGTCACACACGACCCCAGCAAAGACGTCGTCATGCTGTTCAACCCATGGTGTGAAGtTGACACAGTGTACATGGATgacgaggaggagaagaaggagtaTGTACTGAATGACATAGGAAGACTCTACTACGGTACAGAGACACAGATTGGAGCTCGCACATGGAACTATGGACAGTTCCTTGAGGGGATGCTTGAGGCCTGTCTCTATGTGCTGGAGAAGAGTGAGATCCCTCCGTCTGGTAGAGGAGATTCTGTCAACGTGGTCAGAGTCATATCTGCCATGATCAACTCCCCAGATGACAATGGGGTCCTGGCAGGAAACTGGTCAGGGAACTATGTAGGAGGAGTTTCCCCTACAGCCTGGAGTGGCAGTGTGGACATTCTGATGAAATACCACAAGGAGGGAGGCCAGCCTGTCAAATACGGACAGTGCTGGGTCTTCTCTGGCGTTACcaccacagtgcTCAGGTGTCTGGGTATACCGTGTCGTAGTGTAACAAACTTCCAGTCTGCCCATGACACAGACGTCTCACTCACAACAGACGTGTATCTGGATGAGAATATGGAGCCGCTGGACCACCTCAACTCTGACTCTGTTTGGAACTTCCATGTATGGAACGACTGTTGGATGTCCAGGCCAGACCTTCCTCCTGGTATGGGTGGCTGGCAGGCACTAGACTCCACCCCCCAGGAGACCAGCCAGGGGACCTTCCGCTGTGGCCCTGCCTCTGTCACCGCCATCCGCACCGGCCAGGTCTACCACAAATATGACACGCCCTTCGTCTTCGCTGAGGTGAACAGTGATAAGATCTACTGGCAGAGGAACCTGGACGGTACCTTCACTCAGATCCACAGTGAGAAGAAGGCTGTGGGACACTTCATCAGCACCAAAGCTGTGGGCTCTGATGAGCGCGCTGACATCACACACCTGTACAAACACACCGAAGAATCAGAGGAAGAGCGCATTGCTGTGGAGACAGCCAGTCGCTATGGCACCAGGCCTGATGTGTACTCCACGCCGATGGCGAAGGACGTGAGCGTGGAGGtgaagatggagggggaggggccTCGTATGGGGGAGGATGCCCAGCTGACCATCGTGGTGACCAACCTGAGCTCCCAGCCGCGCAGAACCACGCTCCACAGCCAGGTGGCCGTCATGTACTACACCGGGGTGCTGAAGGGAACCGTCCAGAAAAACAAACTGCCTGTGGAACTCATGCCCAATGAAGTGAAGACCATACAGTGGGTCCTACCCTACCAGAGCTACCAGAACCAGTTGGTGGACCAGGCTGCTCTGATGCTGACTCTGTCTGGACGGGTCTCTGAGACCCAGCAGGTCCTTGCCACTCAGACCAACTTCAGGCTCCGCACACCGGACCTCAACATCGAGCCTGAAGGGGACGCGGTGGTGGGTAAGGAGATGGCAGCCAAGATCACGTTCACCAACCCTCTGCCACATAAACTGAGGGGTGTGGTGTTTAGGGTGGAGGGACTGGGCCTGCAGAAGGTCCGCGAGGTGGTTGTGGGtgATGTTGGAAGCCACTCCACGGTGACTCTGACAGAACACTTCATCCCTACCCAGGCTGGGCCCAGGAAGTTGGTAGCGGCTCTGGACTGTAAACAGCTGACACAGGTGCACGGCGTTGCTGACATCGACGTCCAGAGCCAATGAGAGGGAGCCTGCAGCTCTCTCCTGTCCACTTACCTGGCCTTTAATTCAAGTCTCATCATAGAAAATGGGAAACCTTTTATTCAGTTCTCCCAAGGCATAAGTATTGTTTGATATATTTGATATTTCATGCTGTCATGTAATTATGGAAATATCCTGATCTTTGGATGAAGTTGTAAACGATTGTTAACAAGCGCTAATCTTTTTGATACTCACGTAATATCCTAGAATATCCTAGAATATCCTGATACTCACGTAATATCCTAGAATATCCTGATACTCACGTAATATCCTAGAACCAGTGCGCTTTGCTCTGAAATGGATTTGCTGTTACTGTAAGGGCTGTCCACACCTATAAAGAAGAAACATCAAACTATTGTTGGGGCCATTGAAATAGTTTATGAAAAATCCAGTGGTAAATGTAATTATCTAGCTGTACATTATCTAATATTACTGTATTTTTTAACAAACAATGTCATGGTGCTGTCATCAAACATTTGATAAATACACTGTATACATGTGTTATAATATTCCATTATGTTAGTGTTCAAGTATTTATGTTATCAACATGTTGGATAAAGTGTAACGTCTGTAGCATAACATGTCGGTCAAATTGTATTTTATATGGCTTATTTGAAGCACCAGTTTGATTTTATATGAGGGTTATGCCTAAAGATCTTCTCAATGTGTTAATGTTTATGTGAAATAACTAAAGTCAGTATTATGGCCCATTCATTGGTCATTGTGCTTCCTTGCCTTAAACTGTTCTTATGAAACAAAGAGTCAGCTCCTGAACATTAAGAGATGGAAACAAAGCCTTTGTTGACCTCGCTCTGCTCTCCTAGTGTTAGGGAGCTTTTTACTGCACTTAAAATTCAAGGAAGTAAACTGTTTTAAAGAGTTACATTTTATTGTATTAATGTATCTTTTTGTATGTATTGTCAATGTATTTGCTAATAAAACAACTACTGAG
>XM_021613836.2
ACGGTGACTGGAGGGGCGGGGGAGGGGAGGTTTGAAGCAGAgggtgtgtcaaatcaaatgccGTTTGCATTCCTTAGGAGTGTATAAACCAGTATCTAAGACGCGTATGTAAGAGACATAGGAACTGGTAAGAAAAACTTTTAAACCTGATCATACAAGAACGGAGAGCCATTGAAAACTTTCAAACGCACTCAAACTTTTTTTGGTGAATCAAGAAGCAATCACCCAAGACAAAAATGCCAGGAGACCGGTCGACGGTGAGTGGTTCTGTTGTGGGCCGTTTCCATGGCGTCGCCCCGACCACAGTGCAGATAACCAACCAGAAGGAGGCGGAGTCTAATTCTAAGAAGCAGGGAGGCTGTCGCCGTTGGTTTCAGAAGATGTGCCCCTGCTGCTGTCGACGCCAGAGCAGCTCGTATGACATCACAGACACTGTCATCACGGATGACGGGGTGAAACCAACCACGCTCCCCGAGCCTCCTCAGCCCCACACTGGAGACAACGAGCTGGAAGAACTGATGTTGTCGGTGCGCTCGGTGGATCTACTGAGCTCTAAGACGGGTCAGAACCGCCTGGAGCATCACACCAACCTTTACCATGGCAATGAGCTCATCATCCGACGTGGCCAGACGTTCCAGATGGAACTGGACCTGTCGCGACCTTTCAACTCCAACACAGACAAACTCCACCTGGAACTCAAGACAGGACCCGTCCCCATGGTGTCTAAGGGCACACACATCATAATTAAATTGGTGGAGGAACTGGAGGACAACAGCTGGGAGGCTAAGATCGTGAAGCAGAACGGCAACAGGATCAAGCTGTCCGTAAACTCGCATCACAAAGCCGTGATTGGCCAGTACAAGCTCACTGTGATGGTGAAGTGCCCTAAGCAGGAGGTGGCCGTCACACACGACCCCAGCAAAGACGTCGTCATGCTGTTCAACCCATGGTGTGAAGtTGACACAGTGTACATGGATgacgaggaggagaagaaggagtaTGTACTGAATGACATAGGAAGACTCTACTACGGTACAGAGACACAGATTGGAGCTCGCACATGGAACTATGGACAGTTCCTTGAGGGGATGCTTGAGGCCTGTCTCTATGTGCTGGAGAAGAGTGAGATCCCTCCGTCTGGTAGAGGAGATTCTGTCAACGTGGTCAGAGTCATATCTGCCATGATCAACTCCCCAGATGACAATGGGGTCCTGGCAGGAAACTGGTCAGGGAACTATGTAGGAGGAGTTTCCCCTACAGCCTGGAGTGGCAGTGTGGACATTCTGATGAAATACCACAAGGAGGGAGGCCAGCCTGTCAAATACGGACAGTGCTGGGTCTTCTCTGGCGTTACcaccacagtgcTCAGGTGTCTGGGTATACCGTGTCGTAGTGTAACAAACTTCCAGTCTGCCCATGACACAGACGTCTCACTCACAACAGACGTGTATCTGGATGAGAATATGGAGCCGCTGGACCACCTCAACTCTGACTCTGTTTGGAACTTCCATGTATGGAACGACTGTTGGATGTCCAGGCCAGACCTTCCTCCTGGTATGGGTGGCTGGCAGGCACTAGACTCCACCCCCCAGGAGACCAGCCAGGGGACCTTCCGCTGTGGCCCTGCCTCTGTCACCGCCATCCGCACCGGCCAGGTCTACCACAAATATGACACGCCCTTCGTCTTCGCTGAGGTGAACAGTGATAAGATCTACTGGCAGAGGAACCTGGACGGTACCTTCACTCAGATCCACAGTGAGAAGAAGGCTGTGGGACACTTCATCAGCACCAAAGCTGTGGGCTCTGATGAGCGCGCTGACATCACACACCTGTACAAACACACCGAAGAATCAGAGGAAGAGCGCATTGCTGTGGAGACAGCCAGTCGCTATGGCACCAGGCCTGATGTGTACTCCACGCCGATGGCGAAGGACGTGAGCGTGGAGGtgaagatggagggggaggggccTCGTATGGGGGAGGATGCCCAGCTGACCATCGTGGTGACCAACCTGAGCTCCCAGCCGCGCAGAACCACGCTCCACAGCCAGGTGGCCGTCATGTACTACACCGGGGTGCTGAAGGGAACCGTCCAGAAAAACAAACTGCCTGTGGAACTCATGCCCAATGAAGTGAAGACCATACAGTGGGTCCTACCCTACCAGAGCTACCAGAACCAGTTGGTGGACCAGGCTGCTCTGATGCTGACTCTGTCTGGACGGGTCTCTGAGACCCAGCAGGTCCTTGCCACTCAGACCAACTTCAGGCTCCGCACACCGGACCTCAACATCGAGCCTGAAGGGGACGCGGTGGTGGGTAAGGAGATGGCAGCCAAGATCACGTTCACCAACCCTCTGCCACATAAACTGAGGGGTGTGGTGTTTAGGGTGGAGGGACTGGGCCTGCAGAAGGTCCGCGAGGTGGTTGTGGGtgATGTTGGAAGCCACTCCACGGTGACTCTGACAGAACACTTCATCCCTACCCAGGCTGGGCCCAGGAAGTTGGTAGCGGCTCTGGACTGTAAACAGCTGACACAGGTGCACGGCGTTGCTGACATCGACGTCCAGAGCCAATGAGAGGGAGCCTGCAGCTCTCTCCTGTCCACTTACCTGGCCTTTAATTCAAGTCTCATCATAGAAAATGGGAAACCTTTTATTCAGTTCTCCCAAGGCATAAGTATTGTTTGATATATTTGATATTTCATGCTGTCATGTAATTATGGAAATATCCTGATCTTTGGATGAAGTTGTAAACGATTGTTAACAAGCGCTAATCTTTTTGATACTCACGTAATATCCTAGAATATCCTAGAATATCCTGATACTCACGTAATATCCTAGAATATCCTGATACTCACGTAATATCCTAGAACCAGTGCGCTTTGCTCTGAAATGGATTTGCTGTTACTGTAAGGGCTGTCCACACCTATAAAGAAGAAACATCAAACTATTGTTGGGGCCATTGAAATAGTTTATGAAAAATCCAGTGGTAAATGTAATTATCTAGCTGTACATTATCTAATATTACTGTATTTTTTAACAAACAATGTCATGGTGCTGTCATCAAACATTTGATAAATACACTGTATACATGTGTTATAATATTCCATTATGTTAGTGTTCAAGTATTTATGTTATCAACATGTTGGATAAAGTGTAACGTCTGTAGCATAACATGTCGGTCAAATTGTATTTTATATGGCTTATTTGAAGCACCAGTTTGATTTTATATGAGGGTTATGCCTAAAGATCTTCTCAATGTGTTAATGTTTATGTGAAATAACTAAAGTCAGTATTATGGCCCATTCATTGGTCATTGTGCTTCCTTGCCTTAAACTGTTCTTATGAAACAAAGAGTCAGCTCCTGAACATTAAGAGATGGAAACAAAGCCTTTGTTGACCTCGCTCTGCTCTCCTAGTGTTAGGGAGCTTTTTACTGCACTTAAAATTCAAGGAAGTAAACTGTTTTAAAGAGTTACATTTTATTGTATTAATGTATCTTTTTGTATGTATTGTCAATGTATTTGCTAATAAAACAACTACTGAG

Function

symbol description
tgm1 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Is expressed in second tier layer of breeding tubercle and spinous layer of breeding tubercle. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

NR:

description
protein-glutamine gamma-glutamyltransferase K-like

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K05619 TGM1; transglutaminase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613837.2 False 3440 mRNA 0.49 14 75544924 75566032
XM_021613836.2 True 3546 mRNA 0.49 14 75544926 75566032

Neighbor

gene id symbol gene type direction distance location
LOC110530623 LOC106569476 coding upstream 22272 75490835 ~ 75522652 (+)
LOC110530620 LOC106569477 coding upstream 100086 75388627 ~ 75444838 (+)
LOC110530987 LOC106569478 coding upstream 186970 75151419 ~ 75357954 (+)
psmb5 LOC106569426 coding upstream 448266 75088776 ~ 75096658 (+)
LOC110530986 LOC102210751 coding upstream 459288 75084467 ~ 75085636 (+)
LOC110530628 LOC106569474 coding downstream 29658 75595690 ~ 75609631 (+)
LOC110530629 LOC106569473 coding downstream 47908 75613940 ~ 75618260 (+)
LOC110530631 catip coding downstream 75222 75641254 ~ 75645294 (+)
trnae-cuc-7 NA coding downstream 95417 75661449 ~ 75661520 (+)
LOC110530632 LOC106569469 coding downstream 100282 75666314 ~ 75672821 (+)
G747038 NA non-coding upstream 1438 75542967 ~ 75543486 (+)
G747035 NA non-coding upstream 1830 75539255 ~ 75543094 (+)
G746995 NA non-coding upstream 74813 75469911 ~ 75470111 (+)
G746993 NA non-coding upstream 80312 75464390 ~ 75464612 (+)
G746951 LOC106591969 non-coding upstream 161681 75379450 ~ 75383243 (+)
G747065 NA non-coding downstream 39343 75605375 ~ 75607233 (+)
G747098 NA non-coding downstream 104760 75670792 ~ 75671187 (+)
G747118 LOC106569490 non-coding downstream 122333 75688365 ~ 75697197 (+)
G747508 NA non-coding downstream 203608 75769640 ~ 75770618 (+)
G747516 NA non-coding downstream 216245 75782277 ~ 75782622 (+)
G746936 NA other upstream 216729 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 511028 75014644 ~ 75033896 (+)
G746052 NA other upstream 591270 74952685 ~ 74953842 (+)
G747680 NA other downstream 549661 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 673918 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 885538 76451222 ~ 76453376 (+)
G748432 NA other downstream 1140698 76706730 ~ 76708278 (+)
G748905 NA other downstream 1584631 77150663 ~ 77177349 (+)

Expression


Co-expression Network