LOC110530628 (LOC106569474)


Basic Information

Item Value
gene id LOC110530628
gene name LOC106569474
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75595690 ~ 75609631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986266.1
TGGTTTTCGCGCGAAAAATGCACTTTCTTTCCCACAGCGTGCGTTGTACAGTCAAAAGGAGACGGGAGTGACTTTAGAACTATTTCATATATTAATATTTTAGTTTTAATCCAGTGAAAATATGGATCTTGTACAGCCGACTCAGGAGAATGCGGGACAGATGGTGAAGGACGAGTTGGCAGAGAAATGCCAGAAGCTTTTCCAGGCTTTCTTAGAAGAgtACCAGACAGCAGACGGTGAGGTGAAGTATGTCCGTGATGCTGAGGAGCTGATCAGGccagagagaaacactctgctggTCTCCTTCACTGATCTGGAAGGATTTAATCAGGAACTGGCAACCACCATCCAGGAGGAGTTCTACAGAGTGTATCCCTTCCTTTGTCGTGCGGTGAGGAACTTTGCTAGGGATCATGGGAATGTCCCAGTGAATAAGGAGTTCTACTTGGCCATTCAGGACCTGCCCACCAGACACAAGATCCGTGAGCTGTCCTCCCTGCGTATCGGCTCTCTGGTGCGGTTCAGTGCACAGGTAGTGAGGACGCACCCCGTACACCCAGAACTAGTGAGCGGGACGTTCCTGTGTCTGGACTGCCAGGGGGTGTGTCCGGACGTGCCCCAGCAGTTCAAGTACGCACCGCCCACCGTCTGCAGGAACCCCGTCTGCAGCAACCGCGCTCGCTTCCACCTAGACACACACCGCTCCAAGTTCATCGACTTCCAGAAGgtgcGTATCCAGGAGACCCAGGCAGAGCTGCCCAGAGGGTCCATCCCCCGCTCTCTAGAGGTGATTCTGAGGGCTGAGGCTGTGGAGACGGCCCAGGCCGGAGACCGCTGTGATATCACTGGCTCGCTGATAGTGGTTCCCGACGTCTCCCAGCTCAGCACCGcagGTGTGCGAGCAGAGACCAGTTCCCGTGTAGGAGGGAGACAGGGTTATGAGAACGAGGGCCTTCGCGGTCTTAAAGCCCTGGGTGTCAGAGAGCTGTCCTACAGACTGGCCTTCCTCGCCTGCCATGTGGCTCCTACCAACCCCAGGttcggAGGGAAGGAGCTGCGTGATGAGGATCAGACGGCAGAGAGCATCAAGAGCCAGATGTCAGTTCAGGAGTGGGAGAAGGTGTTTGAGATGAGCCAAGACAAGAACCTCTACCACAACCTCGGCACCAGTCTGTTCCCAACTATACACGgtaacgATGAGGTGAAGCGTGGTATCCTGTTGATGTTGTTTGGGGGTGTTCCTAAGACCACCATGGAGGGAACGTCTCTCAGAGGAGATGTCAACGTCTGCATTGTCGGAGACCCCTCTACCGCCAAGAGCCAGTTCCTCAAGCATGTGGAGGAGTTCAGTCCCAGGGCTGTGTATACCAGTGGGAAGGCCAGCAGTGCAGCAGGTTTAACAGCAGCTGTGGTTCGAGACGAGGAGTCACATGAGTTCGTCATCGAGGCCGGCGCGCTCATGCTCGCTGAcaacGGTGTGTGTTGTATCGATGAGTTTGATAAgatggagaccagagaccaggtgGCCATCCACGAGGCCATGGAGCAACAGACCATCTCcatcactaaagctggagtcaaggccACTCTGAATGCCCGTACGTCCATCCTGGCGGCTGCTAACCCAGTCGGTGGTCGCTACGACCGCAGCAAGAGTCTGAAACAGAACGTCAACCTATCAGCTCCCATCATGAGCCGCTTCGACCTCTTCTTCATCCTAGTGGACGACTGCAATGAGgtgacaGACTATGCCATAGCCAGACGTATTGTGGATCTGCACTCTCGCATTGAGAACTCAGTAGACAGACTCTACTCTCTGGATGAGATCAGAAGATACCTGCTCTTCGCCCGGCAGTTCAAACCCAAGATCTCTGGTGAGTCAGAGGAGTTCATCGTGGAGCAGTACAAACGTCTGCGTCAGCGCGATGGCTCTGGGGGCGTGGCCACATCTGCCTGGCGAATCACAGTGAGGCAGCTGGAGAGCATGATCCGCCTTTCTGAGGGCATGGCCCGCATGCACTGCTGTGATGAGGTCCAGCCAAAGCACGTCAAGGAGGCATTCCGCCTGCTCAATAAATCCATCATCAGAGTGGAGACACCTGACATCAACCTGGACCAGGACCAGAACCAGGAGATGGAGgcggaagaggagggagagaacgGTCATGATGTTCCTAACGGAGTGAATGACCAGGATAACGGGCAGGTGAACGGCCACACCCACGGAGTTACCGGCCAAACCAACGGTGTGAATGCTCACGCTGACAGCAGCTCCAAGCCCTCGCTGCGTCTCACCTTCCCAGAGTACCGCCGCATCTCCAACCTGCTGGTGCTACACCTCCGCAGGGTCGAGGAGGctgaagaggaggaggagttgaaGAAGAGTGCAGTGATCAACTGGTATCTGAAGGAGATGGAGTCAGAGATTGACTCAGAAGAGGAACTCATCAACAGAAAGAGCCTCATAGAGAAGGTCCTGCATAgactagtgcactatgaTCATATCCTGATTGAGCTGTCTCAGGGGGGGCTGAaagggtcagagacagagacacaggaagAAGTTCTAGTCGTTAACCCCAACTACACTCTGGAGGACTAGACTCATctcatccctcctttctcccctctaACTCCCTCCTCTTTCTATGGGTTTATGTCAGACTCCAATTCAAGACTCTTGAAGCTGTTTTTATTGAACATTGATCTGTGTAATGACATTTTAAACTTGTGGTAAGGTTTCATTTCATTCCTGCTTTGTAGACTTTTTCACAACTCTAGCCtgtttaaaaatgtttatttgtATTATTGTAGCCAGGTGAGTAATGTAAATATGTTGCCCTGATTTCTCCAGAGCGTTTGCTGGCTTATGGCTGTTGAAGTTTGTGCGTGTCCTCAGTTAACTTAATGTTAATCCACTGACTGTACCTCCCATGTTAAATGTATGCATACAACAAAATACACACAAATTAAAGTCTACCTTTGATGCATTtgttttatattttaaaaaaatacaaataagagAAAAACAAAGAGAAGAAAAATCAAATTTTTGATGCTGTTAATGCCCTCCTTGTGGCCGGTGGTGTTTCACTGACCTCGTTAGATATGTCTCTGCATCTGGCTGTACTGTGTTTATACTGCGCTGGTCTCGTCATTTAATAAAGGACTGTCTTCTCCAtgtgattcacacacacacctgtctgtttcTCAACTGATgtttacacacactaaaacaATAAGAACTAAGGGGTCCTTGAGAATCTACAGAAAACATTTAACTATATTAACCTGAGTGGAATGAGATCCCATTTACACCAAGTTGGAGTTCATACGATTGACATGAATGAATATAGCCAAACTAGCCATCTGTTATTTTGTTCTGGCTTGTTACTGTGCAATCACCCAGGCATTTGTGTTTTTCCCCTTTCTGTTGTTTTCTAAGAATAAAAGGTGTTTTCCGCCA

Function

NR:

description
DNA replication licensing factor MCM6

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02542 MCM6; DNA replication licensing factor MCM6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986266.1 True 3466 mRNA 0.50 18 75595690 75609631

Neighbor

gene id symbol gene type direction distance location
tgm1l1 tgm1 coding upstream 29658 75544924 ~ 75566032 (+)
LOC110530623 LOC106569476 coding upstream 73038 75490835 ~ 75522652 (+)
LOC110530620 LOC106569477 coding upstream 150852 75388627 ~ 75444838 (+)
LOC110530987 LOC106569478 coding upstream 237736 75151419 ~ 75357954 (+)
psmb5 LOC106569426 coding upstream 499032 75088776 ~ 75096658 (+)
LOC110530629 LOC106569473 coding downstream 4309 75613940 ~ 75618260 (+)
LOC110530631 catip coding downstream 31623 75641254 ~ 75645294 (+)
trnae-cuc-7 NA coding downstream 51818 75661449 ~ 75661520 (+)
LOC110530632 LOC106569469 coding downstream 56683 75666314 ~ 75672821 (+)
LOC110530636 LOC106569468 coding downstream 185626 75795257 ~ 75799474 (+)
G747038 NA non-coding upstream 52204 75542967 ~ 75543486 (+)
G747035 NA non-coding upstream 52596 75539255 ~ 75543094 (+)
G746995 NA non-coding upstream 125579 75469911 ~ 75470111 (+)
G746993 NA non-coding upstream 131078 75464390 ~ 75464612 (+)
G746951 LOC106591969 non-coding upstream 212447 75379450 ~ 75383243 (+)
G747098 NA non-coding downstream 61161 75670792 ~ 75671187 (+)
G747118 LOC106569490 non-coding downstream 78734 75688365 ~ 75697197 (+)
G747508 NA non-coding downstream 160009 75769640 ~ 75770618 (+)
G747516 NA non-coding downstream 172646 75782277 ~ 75782622 (+)
G747517 NA non-coding downstream 173427 75783058 ~ 75783283 (+)
G746936 NA other upstream 267495 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 561794 75014644 ~ 75033896 (+)
G746052 NA other upstream 642036 74952685 ~ 74953842 (+)
G747680 NA other downstream 506062 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 630319 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 841939 76451222 ~ 76453376 (+)
G748432 NA other downstream 1097099 76706730 ~ 76708278 (+)
G748905 NA other downstream 1541032 77150663 ~ 77177349 (+)

Expression


Co-expression Network