LOC110530629 (LOC106569473)


Basic Information

Item Value
gene id LOC110530629
gene name LOC106569473
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75613940 ~ 75618260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613842.2
ACTATTGGTCGTGTGGCGACTTCTTTGAACCTACTCCGATTGGACAGTAACTAGATGAACGTAAAACTTCACATTTGCAAGGGAAGAGGGGAACGCATAGCGACCACTGAATTATTTCATCAACTTGGCGAGCGAATCAGCTTTTAGTCGTACCGGTCCATCATGCAGATGCTGAGAGAGAAGAAGACTTTGTTAACGGAGATCCTGTCTGCGGACTCCAGCTACATCCTTCAGAATGTGCAGCAGGAGGAAATAGTGACTAATCGTGACTACAACAACCTAAACATCCCCAATCAGTCCAATGAGAAGACTGTCATCAACCTGCTGGATAAAGTGATGAATAAAGGAGACACAAAAAGCTATGAACTCGTGAACCTGCTGCAGAAACCACATATGATAAAAAACTACCCTAGACTGGAGGAAATATTCAACAACCACACAGAACCAAGTGACCACACCTTCAACCCAGCCCCAACAATCCCAATTCCCTGTACAGATAATTCTGACCTGGAAACAGTGGTCACAGGTGGCGATGAGGTCAGTCTGTATGAGATGACCAGTGTACCCCGTGGTCTCTGTTTGATCATCAACAATGAGATATTTGATAAACTGAGTGAAAGAACAGGATCAAACAAGGATGCTGTGGATCTGGCCAACATATTCAGCCGGATGAAGTTCAGGGTGGTGATGTGCAAGGACAAGACTGCAGTGGAGATTCCCAGTGTGCTGAAGGTCTTTTCTGAGCTGAAGCAGTTATCTGACCTCCAACAGTACAATGCGAAGGAGTGGGTCGGTGGTCAGTTCACTGATCTAAAGGATCTTCCTAAGCATGGCGATGCCTTCGTCTGCTGCATTCTGAGTCACGGAAAAAAGGAGGGCGTCTGTGGTACAGATGGAACAGTCGTCCCCACCATTGATATCCTCTCACCTTTCAACGGCACAAACTGTAGCATCCTTGTTGAAAAGCCCAAGCTGTTCTTCATCCAAGCCTGTCGAGGGAAGGACGTTCAGAAGGGCGTGCCGGTGAACAAGAAGCCTAAAGTTGAAGGGACGGACATGGAACTGGACACAGACGACGGCCAAGTCCAAGACTACACCCTTCCACTATACTCCGACTACCTGGTTTTCATGGCCAACGTAGATCAGTATATCTCCATCAGGAGCCCAACCTCTGGGTCCTGGTTCATCCAGTCTCTGTGTGGCCAGCTTGAGAAAAGCTGTACCAGAGGGAAAAACATCTATGAGATCCTTACAGGGGTCAAAGCTGCGGTGAGCAAGAAAAAAGGTGACCTTCGTATTAAAGATGCCAACGGTGGTTATGGCTACGAGGTGGTCAAGCAATCACCAGATTCTAGAGACACCCTGACCAAGATGCTCATCTTTCCTGCTGAGACCAAGCATTCTTCCTGATGATCTCTTGATGTTACCATGGTACCCTTCATCATCAGCAGTCCATATGCTCTTTCAAGTTCAGTTTTGATATGAAAGGTTGAATAGGCCATAATCAGGACACTACCAAGTTCCTGTGGTGGCATTCTTATTTGTTTTACTTTTACATGGTACATTTATTACTTTTACATTAATTGTTGTTCAATTTTACAGGACTTggacaaaaatacattttatattaatGATACAGAATTTCACCAGCTTATATACCAAAAGTCCTGTGGCACTGCTGCAGCTCAACCAAGTGAGCCAGGTGACATTGACTTTTTAACCAAACTATTAGTTGGATATGTGAAGAAGTTTCATAGCAAGAACAACTGGTTATTGATATCTTGGCACACTGTTTCAGCTTtactttaaatatttttttatgtgaTTTCATCTACTTTCTTTATTTAGAATTTTTTATACAATCATGTTTTCTCACATGCCTTTCCTGCCATCTTAAAATATGTTATActtcaaaataaatattttatcgACAGT

Function

NR:

description
caspase-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613842.2 True 1935 mRNA 0.43 6 75613940 75618260

Neighbor

gene id symbol gene type direction distance location
LOC110530628 LOC106569474 coding upstream 4309 75595690 ~ 75609631 (+)
tgm1l1 tgm1 coding upstream 47908 75544924 ~ 75566032 (+)
LOC110530623 LOC106569476 coding upstream 91288 75490835 ~ 75522652 (+)
LOC110530620 LOC106569477 coding upstream 169102 75388627 ~ 75444838 (+)
LOC110530987 LOC106569478 coding upstream 255986 75151419 ~ 75357954 (+)
LOC110530631 catip coding downstream 22994 75641254 ~ 75645294 (+)
trnae-cuc-7 NA coding downstream 43189 75661449 ~ 75661520 (+)
LOC110530632 LOC106569469 coding downstream 48054 75666314 ~ 75672821 (+)
LOC110530636 LOC106569468 coding downstream 176997 75795257 ~ 75799474 (+)
LOC110530988 NA coding downstream 183013 75801273 ~ 75826734 (+)
G747065 NA non-coding upstream 6707 75605375 ~ 75607233 (+)
G747038 NA non-coding upstream 70454 75542967 ~ 75543486 (+)
G747035 NA non-coding upstream 70846 75539255 ~ 75543094 (+)
G746995 NA non-coding upstream 143829 75469911 ~ 75470111 (+)
G746993 NA non-coding upstream 149328 75464390 ~ 75464612 (+)
G747098 NA non-coding downstream 52532 75670792 ~ 75671187 (+)
G747118 LOC106569490 non-coding downstream 70105 75688365 ~ 75697197 (+)
G747508 NA non-coding downstream 151380 75769640 ~ 75770618 (+)
G747516 NA non-coding downstream 164017 75782277 ~ 75782622 (+)
G747517 NA non-coding downstream 164798 75783058 ~ 75783283 (+)
G746951 LOC106591969 other upstream 230812 75379450 ~ 75383243 (+)
G746936 NA other upstream 285745 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 580044 75014644 ~ 75033896 (+)
G746052 NA other upstream 660286 74952685 ~ 74953842 (+)
G747680 NA other downstream 497433 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 621690 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 833310 76451222 ~ 76453376 (+)
G748432 NA other downstream 1088470 76706730 ~ 76708278 (+)
G748905 NA other downstream 1532403 77150663 ~ 77177349 (+)

Expression


Co-expression Network