LOC110530631 (catip)


Basic Information

Item Value
gene id LOC110530631
gene name catip
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75641254 ~ 75645294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613844.2
TGTCAGGTGTTGTTGCCATGACAACCCATATTGTGAGTTTTTTTTATGCtcttgagacagacagacagacagacggcaaCAGCGAAAAAAAAAGATTGGTCTAACCTTCTGCCAGACTTCTAGCTAAATAAGCTCCAAACTGAAAGTCTGATATGGAAGAGACTGCTACGACGGAGGAAGCCGTGGAGTTAAAAGCCTCTAGCGAGGCCATCGCCTTTCTGTCCAGCATACggGCTGCGGAGATGCAGCGGTGTCTGTTTGAAGACTCTCTGGTGACAGTGTCCgaggggggcagagagctggGAGAGTTTAAGGTGACTGTGGAGAGGACCATTTGCAGGGAGCAGCCTTGCCTGCTGCTGCATGCACACAGCCATGGAGCTATTGACAACACTCCCTGTGGTACAGCCATCACTGCCTACCTTTCTTTGAACCTGGAGACCCTGGAGCAAAACCACCACGAGTACGTCAAGCTTCAGGACCACCGATTGGACAGGAAGTGTCACATGGTCCAGCATGATGGACAGCTGGTGGTGAACAAAATCACCACtgtgggagaggAGATTAGGAGGCAGACCTTGTCGTACCCTCTGTCCTCTGTGAAGGGGTTAGTGTCCGAGGGCTCTAACCTGCTGCTGCTGAGGGTATTCGCTCTGAGGAAGAACGTCCCGGAAAACATGACCTTCCTCTCCTTCGACCAGGACACACACATATCCACCTCCACATATAAGGAGCTGGGGTGCAGGCAGCAGACGGCgggagaggaggtggtggaggtgtttGGGGTGGAGAGGACGGTCAACTCGGTGGAGGACATCCCAGCCATGTGGCACTGCTACTTCCTGTCTGACGGGCATCTGGCTAGCCGAGTGCAGGTGGGCTCTCCTGTGACCATGAGGCTCTTGCTACTCCCgctccaaacacacacagAGGTGAGAGATGATAAGCCTGTGTTTGAGAAGAGGTCTCTGGTCTGGGAGGAGGACATGCAGATGCACTCCATGTTCCTGGACAGAAAGgagGAGTTGAAGGCGGAGCATGCCTCGTACCTGCGGCAGCACCCGGAGCTCCGCACTATGATGGCTGACTTCCTGCAGTTTTTGTTACTAAGGAAACCGAGCGACGTATTTGTGTTTGCCCGCGAATACTTCTCCCCATTTGCCTCCCTCCAACCTCCGGGGAGCACCTTCAACACCTCCTCACCCTGAGGATGCGTCTCAACAGTATAAATAGCTTCCTCTCCACTGATCTGAGACACGTATGGGATAGGTGAAAGCACTGTGATGTAGGCTTGCCGTGCCTACTAGAGATTGGAATTAACTTGTCCAATTATTTTATGTCAGTTCAGATGGAGGAAAGGGAATGAAGAGAAGAAGCCTCTTTTGAGATTCAGCCCAGTTCTCTTTAATAGGTTCTGTCTTTcatctttttttcatttttttgcccctttttctccccaattggtagttacagtcttgtcccatcactgcaacacctgtacagactcgggagaggcgaatgtcgagagccatgtgtcctccgaaacacaaccccgcaaagccgtactgcttcttgacacaatgcccgcttaacctggaagccagccgcaccaatgtgtcggaggaaaccatgtacacctggcgaccgtgtcaacATACATGCGCccgacccgccacaggagtcactaaaGCGTGATGGTGACGCGATTGTGCACATCTTCacgggtctcccggtcgcagccaggaatcgaaccaggatctgtagtgacacagctagcactgcaatgcaaagccttagaccgctgggagGCCCTCCGTCTTTCATCTCTTGAGGGACAACTGAACTATTTATTGGTGGTTTTTGCAATAAGGCAGAGCAGTGGTTATGAAGGAAATAAGATGAGGAAAGGGAGCACTAAATTATTGGGACATAGATAAGGAATTCCAGGAGCTCattttcagctgtgtgtgtgttgtcattttAAATTTCAATAAAGCGTAATGTTTTATTTAAGCAAAA
>XM_021613845.2
TGTCAGGTGTTGTTGCCATGACAACCCATATTGTGAGTTTTTTTTATGCtcttgagacagacagacagacagacggcaaCAGCGAAAAAAAAAGATTGGTCTAACCTTCTGCCAGACTTCTAGCTAAATAAGCTCCAAACTGAAAGTCTGATATGGAAGAGACTGCTACGACGGAGGAAGCCGTGGAGTTAAAAGCCTCTAGCGAGGCCATCGCCTTTCTGTCCAGCATACggGCTGCGGAGATGCAGCGGTGTCTGTTTGAAGACTCTCTGGTGACAGTGTCCgaggggggcagagagctggGAGAGTTTAAGGTGACTGTGGAGAGGACCATTTGCAGGGAGCAGCCTTGCCTGCTGCTGCATGCACACAGCCATGGAGCTATTGACAACACTCCCTGTGGTACAGCCATCACTGCCTACCTTTCTTTGAACCTGGAGACCCTGGAGCAAAACCACCACGAGTACGTCAAGCTTCAGGACCACCGATTGGACAGGAAGTGTCACATGGTCCAGCATGATGGACAGCTGGTGGTGAACAAAATCACCACtgtgggagaggAGATTAGGAGGCAGACCTTGTCGTACCCTCTGTCCTCTGTGAAGGGGTTAGTGTCCGAGGGCTCTAACCTGCTGCTGCTGAGGGTATTCGCTCTGAGGAAGAACGTCCCGGAAAACATGACCTTCCTCTCCTTCGACCAGGACACACACATATCCACCTCCACATATGAGCTGGGGTGCAGGCAGCAGACGGCgggagaggaggtggtggaggtgtttGGGGTGGAGAGGACGGTCAACTCGGTGGAGGACATCCCAGCCATGTGGCACTGCTACTTCCTGTCTGACGGGCATCTGGCTAGCCGAGTGCAGGTGGGCTCTCCTGTGACCATGAGGCTCTTGCTACTCCCgctccaaacacacacagAGGTGAGAGATGATAAGCCTGTGTTTGAGAAGAGGTCTCTGGTCTGGGAGGAGGACATGCAGATGCACTCCATGTTCCTGGACAGAAAGgagGAGTTGAAGGCGGAGCATGCCTCGTACCTGCGGCAGCACCCGGAGCTCCGCACTATGATGGCTGACTTCCTGCAGTTTTTGTTACTAAGGAAACCGAGCGACGTATTTGTGTTTGCCCGCGAATACTTCTCCCCATTTGCCTCCCTCCAACCTCCGGGGAGCACCTTCAACACCTCCTCACCCTGAGGATGCGTCTCAACAGTATAAATAGCTTCCTCTCCACTGATCTGAGACACGTATGGGATAGGTGAAAGCACTGTGATGTAGGCTTGCCGTGCCTACTAGAGATTGGAATTAACTTGTCCAATTATTTTATGTCAGTTCAGATGGAGGAAAGGGAATGAAGAGAAGAAGCCTCTTTTGAGATTCAGCCCAGTTCTCTTTAATAGGTTCTGTCTTTcatctttttttcatttttttgcccctttttctccccaattggtagttacagtcttgtcccatcactgcaacacctgtacagactcgggagaggcgaatgtcgagagccatgtgtcctccgaaacacaaccccgcaaagccgtactgcttcttgacacaatgcccgcttaacctggaagccagccgcaccaatgtgtcggaggaaaccatgtacacctggcgaccgtgtcaacATACATGCGCccgacccgccacaggagtcactaaaGCGTGATGGTGACGCGATTGTGCACATCTTCacgggtctcccggtcgcagccaggaatcgaaccaggatctgtagtgacacagctagcactgcaatgcaaagccttagaccgctgggagGCCCTCCGTCTTTCATCTCTTGAGGGACAACTGAACTATTTATTGGTGGTTTTTGCAATAAGGCAGAGCAGTGGTTATGAAGGAAATAAGATGAGGAAAGGGAGCACTAAATTATTGGGACATAGATAAGGAATTCCAGGAGCTCattttcagctgtgtgtgtgttgtcattttAAATTTCAATAAAGCGTAATGTTTTATTTAAGCAAAA

Function

symbol description
catip Involved in actin filament polymerization and cilium organization. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in several cellular components, including actin cytoskeleton; nucleus; and plasma membrane. Is expressed in caudal fin; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CATIP (ciliogenesis associated TTC17 interacting protein).

NR:

description
ciliogenesis-associated TTC17-interacting protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613844.2 False 2019 mRNA 0.51 10 75641254 75645294
XM_021613845.2 True 2016 mRNA 0.51 10 75641254 75645294

Neighbor

gene id symbol gene type direction distance location
LOC110530629 LOC106569473 coding upstream 22994 75613940 ~ 75618260 (+)
LOC110530628 LOC106569474 coding upstream 31623 75595690 ~ 75609631 (+)
tgm1l1 tgm1 coding upstream 75222 75544924 ~ 75566032 (+)
LOC110530623 LOC106569476 coding upstream 118602 75490835 ~ 75522652 (+)
LOC110530620 LOC106569477 coding upstream 196416 75388627 ~ 75444838 (+)
trnae-cuc-7 NA coding downstream 16155 75661449 ~ 75661520 (+)
LOC110530632 LOC106569469 coding downstream 21020 75666314 ~ 75672821 (+)
LOC110530636 LOC106569468 coding downstream 149963 75795257 ~ 75799474 (+)
LOC110530988 NA coding downstream 155979 75801273 ~ 75826734 (+)
LOC110530640 LOC106569461 coding downstream 313714 75959008 ~ 75997054 (+)
G747065 NA non-coding upstream 34021 75605375 ~ 75607233 (+)
G747038 NA non-coding upstream 97768 75542967 ~ 75543486 (+)
G747035 NA non-coding upstream 98160 75539255 ~ 75543094 (+)
G746995 NA non-coding upstream 171143 75469911 ~ 75470111 (+)
G746993 NA non-coding upstream 176642 75464390 ~ 75464612 (+)
G747098 NA non-coding downstream 25498 75670792 ~ 75671187 (+)
G747118 LOC106569490 non-coding downstream 43071 75688365 ~ 75697197 (+)
G747508 NA non-coding downstream 124346 75769640 ~ 75770618 (+)
G747516 NA non-coding downstream 136983 75782277 ~ 75782622 (+)
G747517 NA non-coding downstream 137764 75783058 ~ 75783283 (+)
G746951 LOC106591969 other upstream 258126 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 284097 75151419 ~ 75357954 (+)
G746936 NA other upstream 313059 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 607358 75014644 ~ 75033896 (+)
G746052 NA other upstream 687600 74952685 ~ 74953842 (+)
G747680 NA other downstream 470399 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 594656 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 806276 76451222 ~ 76453376 (+)
G748432 NA other downstream 1061436 76706730 ~ 76708278 (+)
G748905 NA other downstream 1505369 77150663 ~ 77177349 (+)

Expression


Co-expression Network