LOC110530632 (LOC106569469)


Basic Information

Item Value
gene id LOC110530632
gene name LOC106569469
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75666314 ~ 75672821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613846.2
GCTGTAGTTTCCTGTGTGTCAGACTTCCAGTAATGATTAGTGTCACTTTTACCTCCCCATGCCGTCACAGTGTGTGTCAACACGCTTTCTTCTGACACTTAACGGCATCAAGACCAAACCAAGGAGTATATTCAGCGAAACACAAGAGGTTTGCAATGGTGCAATGTCTGGTGTTCACACTCTGGGTCTGTGCTGTGGCACTGCATTCCCATGGAAGTACAGAGAGAGTATCTCAAACGACTGAGCCAAGTGTCTCTAGGAGCACAGACCCGACGGCTGAGACAGTTACTTTAGGACCAGTTGAGACCCAAAGccctgatacacacacagaccagagCATAGAAGAAGAACAAGAACCACTTCCCTCAGACCCCTGTCAGGATGAGGAGATGGATAAGagcgtGTACCAGAGGGATTCTCATGGTGTTATGCAGCTGGTTCAGGGAGAGGACTACAAAAACACTTGCAACCTATCAGACACTCCAGGTGAACAGGCCCACTGTCTTATCTACCCTACCAATCAACTCAACTGCTCCTGGAATTTCCATGGTCTCCCTAACGACAGCCAATCCTACGCCTCCGTCTTTGTGTGTAAGAACACTGAGAGAATCTCCAGTGTGGACTGTGTCACTGAGGCCATAGGAGGCCAAGGAGCCCAGGGAGGGACTGGAAAGGCTGACCGTGTGGTTGGAAATGTGTCTACTGGGTGCCAAGGCAGTGTGGACAACAGCGCCACCTCGGTGATCCTGACTTTCAACGTGTCATGCTCTGACGTGTGGGGCATCTACACCCATAAATACCAGACCAAAGATATTGATGTGCTGGGCCCGCCCCCCGACATCAACCCAGCCTGGGTCAGAGAGGGGGTTCTGCTGGTGCAGTGGGGTCTCCCATCCATTCGGTCAGCTGCTTCCACTACCAGCTGCTTCCACTACCAGCTACAGATCAATGGCCAGGTGAGGGACTTTAAGGATTTACTGACATACAATGAGACCAACTTAGACCCCACACATTCACACGATGTGAAGATGAGGGTGAGGAGGAGTAAAACCTGCAGAGGATCTCAACACTGGAGCAGCTGGAGCAACACCACCAaggtggCCCCGTTTGAATTTCCCAATCAGCTGAACTCTCTGGTGGTCGTTGGCATCGCTCTGGGAATACCCATGATCctcctgtctctgctgctgctgatTCGACTCCAAAGGGAACGTCTGTTTCCCCACATCCCTGGTCCCCCACTGAAGATTAAACACCTCTTGGAGAGAGACGACCAGTTTCAgTTTGTCCCTCAGGCCCTGCAGTCCAAATTTGTTGAGGAGATCACAGTGGTGGAGGAAGCTAAGGAAACACCTGTGAATTTGGCCAGTTAAACAAGATGGCTTGTTTAAAGCCCAATCATCCTAATCCCCTAGACTGTGTAAGGGACGATTTGTAAGGAGGATCCCCTTAGCAGATGCAGTCATTACCATTTGTTAATACCTATCCAATCCTTTCAAGAGTGGATGCTACTTATTGACATGCATTGTTCTTACATGCTTATTAGTGTCTACTCAATGAATTGTTCTAATGTGCTCAGCTTCTACCAGTGTTGTAGATCTCAAGACCGAGACCAGTCCAGTCTTGAGACCACATATTGGTCTTGTCTTGGTGTCAGCTACATTCGTacttggtcttgactcggtctcggacAGTGAGGACTCGTAATTTCTTCCCTATAGACGAGTGGAGTAAAAACACTCAAACATATAAACTCCTTTCTTGAAACATTATCTTAACAACCTTTATCTATTATAGACATGTTTAcgcagtggtgaacctataggacttcagtgtgacaggttagtacagtggtgaacctataggtcttcagtgtgtaacaggttagtacagtggtgaacctataggtcttcagtgtgtgacagtggtgaacctataggacttcagtgtgtgacaggttggtgattctgaaaggacagcaaCTGTAATACCAGACACTCATGTAGGAGAGTGcactttttgtaaaacacaaagggacagtggtgtagtggagtatACGCAGGTAttttttcagtgggcattgcCTATACTCACTTAATCCTATTGatgcgtatcaaagtagtgtagtggaggcagTGGCGACCCATCATTAAGGGCAGTTCTTCAGTCCCACCTGTTTAGCAGGGGgtgtgcctgttttgcatgttattttgtcattaatatgtgtcacatatcagtttgaaaAAAAtgattgagttaataaagcttcATACAAACATgg

Function

NR:

description
uncharacterized protein LOC110530632

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613846.2 True 2281 mRNA 0.47 10 75666314 75672821

Neighbor

gene id symbol gene type direction distance location
trnae-cuc-7 NA coding upstream 4794 75661449 ~ 75661520 (+)
LOC110530631 catip coding upstream 21020 75641254 ~ 75645294 (+)
LOC110530629 LOC106569473 coding upstream 48054 75613940 ~ 75618260 (+)
LOC110530628 LOC106569474 coding upstream 56683 75595690 ~ 75609631 (+)
tgm1l1 tgm1 coding upstream 100282 75544924 ~ 75566032 (+)
LOC110530636 LOC106569468 coding downstream 122436 75795257 ~ 75799474 (+)
LOC110530988 NA coding downstream 128452 75801273 ~ 75826734 (+)
LOC110530640 LOC106569461 coding downstream 286187 75959008 ~ 75997054 (+)
LOC110530643 LOC106569460 coding downstream 334450 76007271 ~ 76044709 (+)
LOC110530645 LOC100194734 coding downstream 389048 76061869 ~ 76071906 (+)
G747065 NA non-coding upstream 59081 75605375 ~ 75607233 (+)
G747038 NA non-coding upstream 122828 75542967 ~ 75543486 (+)
G747035 NA non-coding upstream 123220 75539255 ~ 75543094 (+)
G746995 NA non-coding upstream 196203 75469911 ~ 75470111 (+)
G746993 NA non-coding upstream 201702 75464390 ~ 75464612 (+)
G747118 LOC106569490 non-coding downstream 15544 75688365 ~ 75697197 (+)
G747508 NA non-coding downstream 96819 75769640 ~ 75770618 (+)
G747516 NA non-coding downstream 109456 75782277 ~ 75782622 (+)
G747517 NA non-coding downstream 110237 75783058 ~ 75783283 (+)
G747525 NA non-coding downstream 129152 75801973 ~ 75802216 (+)
G746951 LOC106591969 other upstream 283186 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 309157 75151419 ~ 75357954 (+)
G746936 NA other upstream 338119 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 632418 75014644 ~ 75033896 (+)
G746052 NA other upstream 712660 74952685 ~ 74953842 (+)
G747680 NA other downstream 442872 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 567129 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 778749 76451222 ~ 76453376 (+)
G748432 NA other downstream 1033909 76706730 ~ 76708278 (+)
G748905 NA other downstream 1477842 77150663 ~ 77177349 (+)

Expression


Co-expression Network