LOC110530636 (LOC106569468)


Basic Information

Item Value
gene id LOC110530636
gene name LOC106569468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75795257 ~ 75799474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613848.2
GCCCTCTCGCGCTGGGAGAGCAAACCTCCGAGAGTGCAAAGCAGAGTGAGcgcgggagaaagagagtgagcgcGTACTAAAACTAAGGGATCATTATCGCAGCATCCTAATAGGAAAACTGGCGTGCCCAACGAGAGAGGGCGAAATTCAACTTGATAAGTGCTTTTGTTTGAATAAATAGTTGAGTTAAGTGCAGccagttcagtgtgttttagttGTGTCAAATCGGCAGAATGGGTATGAGAGGGTGGAACTGGTGGGTGCTGGTGGGCATTCCACTGGCTGTCCTGCCCACTCTCACGCAGGGAAAGACAGTGAAGTACGAGACATTTGAGGAAGACGCCCCTGCAACTGTCATTGGAAACTTGGCCAAGGACATTTCATCCAGCCCCTCCTCCGGCTCCAAGACAAATTTCAGGATGATGAAACAGTTCAACTCGTCTTTTATCCGTTTGAGGGAGAGCGACGGACAGCTGACTATCGGAGAgagaattgacagagagagaatctGTAAACACACCCTTCACTGCCTCGTCGCCTTTGATGTGGTAAGCTTCTCCAAAGAGCAGTTCAAACTCATCCACGTCGAGGTAGAGGTCAAGGACATCAACGACAATTCCCCCGAGTTTCCACGGAAAGAGTCGAGTCTGGAGATCTCCGAAAACACAGCGGTGGGCACGCGGATCCCGTTAGATTTCGCTGTGGATGAAGATGTGGGGTTGAATTACATCCAGAGCTACCAGATCTCCGTTAACAGTCACTTCACCATAGACGTGCTCAGCAGAGCCGACGGGGTTAAATATGCGGAGCTCGTGCTCATGAAAGAGCTGGACCGTGAGACACAGGCTTCCTATGCGCTCGAGCTGGTTGCTATGGACGGCGGCAACCCGTCCCGCACGGGATCCACGCGCATCAACATCAAGGTGAAAGACTACAATGACAACAGCCCCTTGTTCGACAGGAGCAGTTTTACAGTGGACCTCCCTGAGGATGCACCAGTAGGGTTTCTCTTACTGGACCTGAACGCAGAAGACCCGGATGAGGGGCTGAATGGGGAGGTGGTGTATGGTTTTGGTCACCAGGTGCCATCCGAGATAAGACAACTTTTCAGAGTAGACCGCAAAACGGGAAGGCTCACCCTCGAGAGCCCCATTGACTTTGAGAGCAAGAAAACGTACGAATTCGACGTCCAGGCGGTTGACCTGGGTCTGAACCCAAGCCCCGCCATCTGTAAGATAGTGGTGCGGGTCCAGGACGTTAACGACAACGCACCAGAGATCTCCATCACCCCTATGACGTCCATCACGGCTGGAATTGCCTATATCACGGAGGCTGCATCGCGCGAGAGTTTTGTAGCGCTGGTCAGCACCTCTGACATGGACTCTGGAGCTAACGGACAGGTGCACTGTACGCTCTATGGCCACGACCACTTCAGGCTGCAGCAGGCGTACGAGGACAGCTTCATGATAGTGAGTACGAGCCCGTTGGACCGGGAGAAGATCCCTGAGTATAATCTAACAGTGGTGGCAGAGGACTTGGGCTCCCCACCGTTCAGAACCATCACCCAGTACACCATCCGGTTGATGGACGAGAATGACAATGCTCCTGTGTTCAGTAAATCGGCGTATGAAGTGGCTGTGGTGGAGAATAACACCCCGGGGGCCTACATCACCACGGTGGTCGCCAGGGACATGGACTTGGGACACAACGGGAAGGTGATCTACAAGCTCGCTGACACCTACATCATGGGCTCCCCGGTATCTACGTTTGTCTCACTGGACCCCGCGAGCGGCTCCATTTACGCACTCAGGAGCTTCAACTATGAAGTCATGAAACAGCTGGAACTCTGCATCACAGCCAGCGACGGTGGGTCCCCGCCCCTCACCGGAACCGCAAGCATTCATGTCAGGATAGTGGACCAGAATGACAACGCACCTGTCATCAACCAGCCCGCACTAAATAATGGGTCCTCTGAGATTCTGCTGCCCCGGGACGCACCCTCAGGCTACGTCATCACCCGGGTGGAGGCGCGAGATGCTGATGAGGGCGTGAATGCAGAGCTGTCCTACAGACTGGCATCTGGAGAGGGTTCCATGTTCTCCGTTAACAAGGCCACCGGAGAGGTCTACCTCAACCGCGAGCTCAGCCACGACGTGGACGAGACCCTGCGCATGACCGTCACGGTGAGTGACAATGGGAGACCTGCGCTCACCGCCACCGCTACGCTTCATTTCCTCATCATTGTGGGCGCCCCGCCGAATGACAGGACGGTGTACTGGGCAGGCAGCGGGGAGGCGGGGGAGCACGCACAGTGGGACCTGTCAGTGGTGATCATTGTCGTTCTGGCGGGGAGCTGCACGCTCCTGCTGTTAGCAATCATCCTCATCGCCACCACCTGCAACCGGCGGAAACGGGACAAGACTGGAGATGACACAGACTCGTATGGGGAGAAGGAGATCCTGGAAAGGGGCAAGAACATCAGCGACAATCCACTGCTGCCGCTCCATGGAACCGTGGGAGGGTTTGAAGCTCACACCTTCTCTAGCCAGCCCGGGTTTACTGGGGGACACACTGGCAGCAGCGACCTGTGCTCCACCTCTGAGGATGGGAGAGAGGCACCATGCGTCTACGAACCGGACAGCAAACCCAAGgGCTACTCCACTCTGCCCGGCTACGGTAACAGCTACAATAATGGTAAAGAGGCAGTCAGACCAATCACAATCTGGAAGGGCAactcctacaccaccatctccGCGAGAGACCCCGCGTTCAGCGGGAAGGACAGCGGGAAAGGCGACAGTGACTTTAACGACAGTGACAGTGACATCAGTGGCACCGACCTGAAGAaggagggggtaccggtacacccCATGGGCTGTCACAGTGgtcTATGGGCATGTACCAGTGAATGTAAGGTTCTGGGCCACTCTGACCGCTGCTGGAGCCCCTCGGCTGTCCGTGCTCACATTGGTCCCTCACTCGTTCCCACCCCCACCAGCCAGACTGTCTCCTCCTTCAACAGCTTTTCCAAGACTGCCTCGCTGCCCCGGGACTCGCTCCGGAGAGATAACTATTACCAGGCGCACATCCCCAAAACAACGGGCCTGCAGAGCGTGTATGAGAAGGTACTACATAAGGAATATGACTATGTCCTGGTCACTCCTCCCAGACCCTTGAGAGTTCAGGAGATTAGTGACATCACTATCCCAGTCTATAGTCCCACCACGACACGGTGTCCCAGCAATGAAGTCTAAAAAAGAACTTAATTCACAGCGTTCCAAAAAACGGTTTCATTGATCAAACCATGTCAATGAGAATCACATGTTGCTTACAAATGTATGAGATTATTGTGGGAAGAATATGTAAATGAGTTTATATATCCAAAATAATATTTGTGTATTTTGCATTTTTAAGTGTTTCATTGTAAAAGTCACATTTGGAGTTTATATCCAATCACTTTAAAGACTTTGTTGGACATACTGTGTAATTTATGCAAGGATTTGTATATAAagagtttattttttataaaaatcaTAATTAAAAATCGAAGATGTGTACATATTAATTGTAATTATACTCGATTCTAAGGCATGAATTCTATTTAAATGGCCCAGAAACAACGGTTTTAGGCTGGAGACCCAACGTACAAGTTGATAATTAtgtatgaatttatttgaatGCAATAATGTAATAATTGTTTAGATTTTGTATCACGATATTCGAAAGAAAATAAACATTGAAATACTGTTTTGCAA

Function

NR:

description
protocadherin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613848.2 True 3755 mRNA 0.52 3 75795257 75799474

Neighbor

gene id symbol gene type direction distance location
LOC110530632 LOC106569469 coding upstream 122436 75666314 ~ 75672821 (+)
trnae-cuc-7 NA coding upstream 133737 75661449 ~ 75661520 (+)
LOC110530631 catip coding upstream 149963 75641254 ~ 75645294 (+)
LOC110530629 LOC106569473 coding upstream 176997 75613940 ~ 75618260 (+)
LOC110530628 LOC106569474 coding upstream 185626 75595690 ~ 75609631 (+)
LOC110530988 NA coding downstream 1799 75801273 ~ 75826734 (+)
LOC110530640 LOC106569461 coding downstream 159534 75959008 ~ 75997054 (+)
LOC110530643 LOC106569460 coding downstream 207797 76007271 ~ 76044709 (+)
LOC110530645 LOC100194734 coding downstream 262395 76061869 ~ 76071906 (+)
LOC110530646 LOC106569459 coding downstream 274231 76073705 ~ 76101494 (+)
G747517 NA non-coding upstream 11974 75783058 ~ 75783283 (+)
G747516 NA non-coding upstream 12635 75782277 ~ 75782622 (+)
G747508 NA non-coding upstream 24639 75769640 ~ 75770618 (+)
G747118 LOC106569490 non-coding upstream 98060 75688365 ~ 75697197 (+)
G747098 NA non-coding upstream 124070 75670792 ~ 75671187 (+)
G747525 NA non-coding downstream 2499 75801973 ~ 75802216 (+)
G747528 NA non-coding downstream 8351 75807825 ~ 75808298 (+)
G747529 NA non-coding downstream 10590 75810064 ~ 75810320 (+)
G747535 NA non-coding downstream 22171 75821645 ~ 75822570 (+)
G747534 NA non-coding downstream 23748 75823222 ~ 75823514 (+)
G746951 LOC106591969 other upstream 412129 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 438100 75151419 ~ 75357954 (+)
G746936 NA other upstream 467062 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 761361 75014644 ~ 75033896 (+)
G746052 NA other upstream 841603 74952685 ~ 74953842 (+)
G747680 NA other downstream 316219 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 440476 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 652096 76451222 ~ 76453376 (+)
G748432 NA other downstream 907256 76706730 ~ 76708278 (+)
G748905 NA other downstream 1351189 77150663 ~ 77177349 (+)

Expression


Co-expression Network