LOC110530652 (LOC106569481)


Basic Information

Item Value
gene id LOC110530652
gene name LOC106569481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76365091 ~ 76377798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613869.2
GACGGAGAGGTGAAGACAGGTGTAGCTTCAAGATGAATCGACTTGTGGTTATCATTGCGACTATCCTTGTCCCCACTGGATACAGTGCTGCAGAAGTTTTGTGGTGTTACCATGATCCTAGTTGTAATGACACCACCTGGTCCACCATTGCCAGTGAACATTGCAATGGATCCCGTCAGTCTCCCATCAACATCATCTCCGCGTTGGCAGTGGGCGACGCAAACCTGGCTGAATTCAACTTCACCAAATACGGAGACAATTATACAATGAAGAATATCAAGAACACTGGCGAAACTGtcAAAGTGACGCTCACGAGGGGTGTCCAGGTTACAGGTGGGGCACTGTCTGAGGCCTATGACAGCCTGCACTTTCACCTCCACTGGGGGAATGGTACCTCAGTACCTGGGTCGGAGCACACAGTGGATGGAACCCGCTACCCCATGGAGTTGCACATAGTAAATGCCAAGTCGTCGCTCAATGGTAACACGACTGCGGCCGTTGCAGACAGCACGGGACTCGCTGCTCTTGGATTCTTCATAGAGGCCATGCCGGGTAATGCAACTGGTTCACCAGCAGCCTGGAATACTCTGACATCCTACTTGGCCAACATCACActaaaagATGATATTGTAAACATTACTCATGCTATTTCATTGGATGAGCTCCTGGAAGGGGTGGACCGTAGCAAATACTACCGTTACCTTGGCTCCCTGACCACTCCAAATTGCAACGAGGCTGTGGTTTGGACCGTGTTCAAGGACCCTATCAAAGTCAGCCAGGACTTGATTGATCTCTTCAGCACAACATTGCACATTGACCACAACTCCACCTCTGCCTTGATGACCAATGTCTTCAGGAACATCCAGCCTGTCAACGGCAGGATGGTGACGACCCAGAGCAGCCCAACCACAGCCCCGCCAGTATCAGGAGCCTCCACAAAGTGCTCCTCTCTGGGCCTTATGGCCCTGGCCTGGATGCTGCTGAGGGTTTAGTGTCGGCAAGTAATGCCTCACCTGAAGCGTACTTCCATGTCTCCATTAACTCTAAAGCTAAATACTGTACATTGATTACCACATGGGTAATTTTGACCCTATGGAGAAACTATTGGAAAAAACAACAATCATAGCAAAATATACACTTATTTCACATCAAAACATCATTATTTAGACATGTAATTAATATTatctaaaaaaatacatttaaataccaAAACAGAAGTACAGTCAATTTGCAGACACTAACAaactaatatacagtgccttcggaaagtgttcagaaaTCCTTGACTTGTtcctcattttgttacattacagccttattctaaaatgtattacattgtttttttccctcatcaatctacacataatacctcataataacatagcaaaaataggtttttagaaatgtttgataatatattacaaattaaaaatggaaatatcacattta

Function

NR:

description
carbonic anhydrase 4-like

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613869.2 True 1449 mRNA 0.44 9 76365091 76377798

Neighbor

gene id symbol gene type direction distance location
LOC110530653 LOC106569481 coding upstream 38548 76321125 ~ 76326543 (+)
LOC110530650 LOC106569487 coding upstream 105183 76245705 ~ 76259908 (+)
LOC110530649 NA coding upstream 153192 76210540 ~ 76212064 (+)
LOC110530646 LOC106569459 coding upstream 263597 76073705 ~ 76101494 (+)
LOC110530645 LOC100194734 coding upstream 293185 76061869 ~ 76071906 (+)
LOC110530654 LOC106569481 coding downstream 12264 76390062 ~ 76406519 (+)
LOC110529140 NA coding downstream 45318 76423116 ~ 76425061 (+)
LOC110530655 LOC106569480 coding downstream 73424 76451222 ~ 76453376 (+)
LOC110530656 LOC106600124 coding downstream 149012 76526810 ~ 76720528 (+)
LOC110530659 LOC106569500 coding downstream 641663 77019461 ~ 77046447 (+)
G747979 NA non-coding upstream 128546 76236345 ~ 76236545 (+)
G747965 NA non-coding upstream 137663 76227209 ~ 76227428 (+)
G747730 NA non-coding upstream 163983 76200908 ~ 76201108 (+)
G747728 NA non-coding upstream 167584 76196390 ~ 76197507 (+)
G748224 LOC100136012 non-coding downstream 54186 76431984 ~ 76432222 (+)
G748242 NA non-coding downstream 63495 76441293 ~ 76441507 (+)
G748244 NA non-coding downstream 66296 76444094 ~ 76444298 (+)
G748289 NA non-coding downstream 101050 76478848 ~ 76479172 (+)
G748290 NA non-coding downstream 102315 76480113 ~ 76480344 (+)
G747680 NA other upstream 249105 76115693 ~ 76115986 (+)
G746951 LOC106591969 other upstream 981963 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 1007934 75151419 ~ 75357954 (+)
G746936 NA other upstream 1036896 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 1331195 75014644 ~ 75033896 (+)
G748432 NA other downstream 328932 76706730 ~ 76708278 (+)
G748905 NA other downstream 772865 77150663 ~ 77177349 (+)
G748917 NA other downstream 801546 77179344 ~ 77180128 (+)
G748959 LOC106569508 other downstream 888854 77266652 ~ 77272660 (+)

Expression


Co-expression Network