LOC110530654 (LOC106569481)


Basic Information

Item Value
gene id LOC110530654
gene name LOC106569481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76390062 ~ 76406519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613871.2
ATGAATGGACTTGTGGTTATCAATGCAGCTCTATTTGTCCTCACTGCAATCAGTGCTGCAGGTGGTTCGTGGTGTTACCATGATCCTAGCTGTGATGACACCACTTGGTCCACCATTGCCTCAGAACATTGCAATGGATCGCGACAGTCTCCCATCAACATCGTCTCTGCATCAGCAGTGGGCGATGAAACCCTGACTGCCTTCACCTTCACCAAATACGGAGACAATTATACAATGAACAAGATCAAGAACACTGGCAAAACAGTCAAAGTCAAGCTGACGAGTGGAGTCCAGGTTACAGGTGGGGCACTGTCTGAGGCCTATGACAGCCTGCACTTTCACCTCCACTGGGGGAATGGTACCTCAGTACCTGGGTCAGAGCACACAGTGGATGGAACCCGCTACCCCATGGAGTTGCACATAGTAAATGCAAAGTCTTCGCACAACGGTAACACGACCATGGCCTTTACAGACAGCACGGGACTCGCTGCTCTTGGCTTCTTCATAGAGCCCGTACCAGGCAATGTGACTGGTTCACCAGCAGCCTGGAATACTCTGACATCCTACTTGGCCAACATCACActaaaagATGATATTGTGAACATTACTCATGCTATTTCATTGGATGAGCTCCTGGAAGGGGTGGACCGTACCAAATACTACCGTTACCTTGGCTCCCTGACCACTCCAAATTGCAACGAGGCTGTGGTTTGGACCGTGTTCAAGGACCCTATCAAAGTCAGCCAGGACTTGATTGATCTATTCAGCACAACATTGCACATTGACCACAACTCCACCTCTGACTTGATGACCAACGTCTTCAGAAACAAAAAGCCTGTCAACGGCCGGGTGGTGACAACCCAGGGCAGCTCATCCACAGCCCTGCCACCGTCGGGAGCCTCTACAACGAACTCCTCTCTGGGCCTCATGGCCCTGGCCTGGATGCTGCTGATGGTTTAG

Function

NR:

description
carbonic anhydrase 4-like

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613871.2 True 960 mRNA 0.51 8 76390062 76406519

Neighbor

gene id symbol gene type direction distance location
LOC110530652 LOC106569481 coding upstream 12264 76365091 ~ 76377798 (+)
LOC110530653 LOC106569481 coding upstream 63519 76321125 ~ 76326543 (+)
LOC110530650 LOC106569487 coding upstream 130154 76245705 ~ 76259908 (+)
LOC110530649 NA coding upstream 178163 76210540 ~ 76212064 (+)
LOC110530646 LOC106569459 coding upstream 288568 76073705 ~ 76101494 (+)
LOC110529140 NA coding downstream 16597 76423116 ~ 76425061 (+)
LOC110530655 LOC106569480 coding downstream 44703 76451222 ~ 76453376 (+)
LOC110530656 LOC106600124 coding downstream 120291 76526810 ~ 76720528 (+)
LOC110530659 LOC106569500 coding downstream 612942 77019461 ~ 77046447 (+)
LOC118965635 NA coding downstream 680616 77087135 ~ 77090382 (+)
G747979 NA non-coding upstream 153517 76236345 ~ 76236545 (+)
G747965 NA non-coding upstream 162634 76227209 ~ 76227428 (+)
G747730 NA non-coding upstream 188954 76200908 ~ 76201108 (+)
G747728 NA non-coding upstream 192555 76196390 ~ 76197507 (+)
G748224 LOC100136012 non-coding downstream 25465 76431984 ~ 76432222 (+)
G748242 NA non-coding downstream 34774 76441293 ~ 76441507 (+)
G748244 NA non-coding downstream 37575 76444094 ~ 76444298 (+)
G748289 NA non-coding downstream 72329 76478848 ~ 76479172 (+)
G748290 NA non-coding downstream 73594 76480113 ~ 76480344 (+)
G747680 NA other upstream 274076 76115693 ~ 76115986 (+)
G746951 LOC106591969 other upstream 1006934 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 1032905 75151419 ~ 75357954 (+)
G746936 NA other upstream 1061867 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 1356166 75014644 ~ 75033896 (+)
G748432 NA other downstream 300211 76706730 ~ 76708278 (+)
G748905 NA other downstream 744144 77150663 ~ 77177349 (+)
G748917 NA other downstream 772825 77179344 ~ 77180128 (+)
G748959 LOC106569508 other downstream 860133 77266652 ~ 77272660 (+)

Expression


Co-expression Network