LOC110530655 (LOC106569480)


Basic Information

Item Value
gene id LOC110530655
gene name LOC106569480
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76451222 ~ 76453376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613872.2
ATGGGGCTTTCATTCAACCCTCTTACCAACACCAATACTAAGACACAGTCATGTATTTTGTCATGTCATTTCTTACCAAAACAGCACTACTCTCTGTTTTTCCTTCTGCACATGCATTAAACCAGTCTCTCAGTATAACTACAAATCTATTGCTACAGGAATGGAAATCTGTCCTGTCATcagtgatgagagagagtgagagtggggGGAGACAGTTGGGGGGTCTGTGGGAGGAAACCAGATTTTGATGCTGTCTGAGTGTAGGAAAGTATTTGTGTAtggcatgtctctctctgtgtatgagtgtgtggtgTTGGTGGGCTTAAAAAGAGCTGCAGTTCTGGTGAAAGTCACACATCTGCAAACTCTCAGAGTGAGCGATTCAGACAGAATGAtgggcctcctctctctcttgctcctcttcAGCACAACTCTACTGATGTCCACCTCTTCTTCTCATGCCAGTGGAGCAGTAACTCCGTGCTGTATAGAGATGAAAGGCACTATGGTGCGTCGTGACCTGATCAAGCGCTACTACATACAAGACACAGCCATGTGTAACATCAAGGCAGTGACgTTTGTCACAGTGAAAGGCATACGAATCTGCTCTGACCCTTCCAACCCCTGGGCAAAGAAAACCATGCAGTACCTGGACAATAAGAACAAGCCTCACACACTGAAaaaacatcacatcacatcaactactactactacgaccaCCGCCACACAACCAGCAAAATACAACCCTCACAAAACAACATTTTCAGCTCACAACCCCAAAATTGCATCTCAATGGCCAACGACTCTTACCACAAGACAATGAAGAACATAGAATGTTCCAGTTACCTCATAGTAAATTAGACTATTGACTTTGAATATTTGAACATTCTCAAAATGCTGTGCTTAtaacactgtttttttttttatatttttttttacaatgtacaATATTTATGTCACTTTAATGAATAGCTGGTCACAATTTATTTgggtagtccatctgtagatgtttAAGATGGACATACTATCAACAAACAATCTTTTGATAAGCAAGTGCTTGCTAAGGTGACGGTTAGGGTAATGGTTAGGTTTAtaattaaggtaagggttaaggtaagggttaagtttagggttagaataagtgTTAAGGTTAGTAAATAGCCATTTGAAATGTTGATGATAaaacatctacagatggactatctaaATGAAGTGTTACCGAGTATCTTAACATATTTATCAATTCATCAATTCAATTCACTTCTATTCACTTCCAAATTCACTTAAATTTGCTGACTATTTGCCAGTATGCCTAAATAATGTATAATGTTTCCTTGTAAGGGTTGATTTGTTGTCCATCTGGTGATGGTTCTTGTGCAAAACGGCTGTCAAACATCACCCAGATGGTTGCCAGACATTAGTAATGGATGTGCACTGTACAATATCATGTGATGTCCTTTAAAACTCTTAGTGAAATTAAAGCGAAGTAAATACAACCAGTTCTATTGATTCATTGAGTTTAATAGTAAATTAAAGCAGAAGGTGACATTTTCTGCTGGCAACTGCATGTGACTGCTGTAGGTATATTAGTCACTTTGCTTGTCTCACTGATGACCCACAAGACCCATAAGTTCAATAGACATCACATCTGGCCATGCTACAAAGGACAGAAGGATAGATGCAAATGTTACGCAAATGCTTTTAACCCATAACTTGAACTTTAACCTTACCCTGAA
>TU849434
AGTCACACATCTGCAAACTCTCAGAGTGAGCGATTCAGACAGAATGAtgggcctcctctctctcttgctcctcttcAGCACAACTCTACTGATGTCCACCTCTTCTTCTCATGCCAGTGGAGCAGTAACTCCGTGCTGTATAGAGATGAAAGGCACTATGGTGCGTCGTGACCTGATCAAGCGCTACTACATACAAGACACAGCCATGTGTAACATCAAGGCAGTGACgTTTGTCACAGTGAAAGGCATACGAATCTGCTCTGACCCTTCCAACCCCTGGGCAAAGAAAACCATGCAGTACCTGGACAATAAGAACAAGCCTCACACACTGAAaaaacatcacatcacatcaactactactactacgaccaCCGCCACACAACCAGCAAAATACAACCCTCACAAAACAACATTTTCAGCTCACAACCCCAAAATTGCATCTCAATGGC

Function

NR:

description
C-C motif chemokine 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613872.2 False 1736 mRNA 0.39 3 76451222 76453376
TU849434 True 449 TUCP 0.47 3 76451570 76452437

Neighbor

gene id symbol gene type direction distance location
LOC110529140 NA coding upstream 26161 76423116 ~ 76425061 (+)
LOC110530654 LOC106569481 coding upstream 44703 76390062 ~ 76406519 (+)
LOC110530652 LOC106569481 coding upstream 73424 76365091 ~ 76377798 (+)
LOC110530653 LOC106569481 coding upstream 124679 76321125 ~ 76326543 (+)
LOC110530650 LOC106569487 coding upstream 191314 76245705 ~ 76259908 (+)
LOC110530656 LOC106600124 coding downstream 73434 76526810 ~ 76720528 (+)
LOC110530659 LOC106569500 coding downstream 566085 77019461 ~ 77046447 (+)
LOC118965635 NA coding downstream 633759 77087135 ~ 77090382 (+)
slc25a12 LOC106569494 coding downstream 674110 77127486 ~ 77155564 (+)
LOC110530663 LOC105020301 coding downstream 728488 77181864 ~ 77210814 (+)
G748244 NA non-coding upstream 6924 76444094 ~ 76444298 (+)
G748242 NA non-coding upstream 9715 76441293 ~ 76441507 (+)
G748224 LOC100136012 non-coding upstream 19000 76431984 ~ 76432222 (+)
G747979 NA non-coding upstream 214677 76236345 ~ 76236545 (+)
G747965 NA non-coding upstream 223794 76227209 ~ 76227428 (+)
G748289 NA non-coding downstream 25472 76478848 ~ 76479172 (+)
G748290 NA non-coding downstream 26737 76480113 ~ 76480344 (+)
G748312 NA non-coding downstream 45299 76498675 ~ 76498888 (+)
G748316 NA non-coding downstream 48934 76502310 ~ 76502764 (+)
G748318 NA non-coding downstream 49973 76503349 ~ 76503806 (+)
G747987 cah12 other upstream 56893 76239950 ~ 76394329 (+)
G747680 NA other upstream 335236 76115693 ~ 76115986 (+)
G746951 LOC106591969 other upstream 1068094 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 1094065 75151419 ~ 75357954 (+)
G746936 NA other upstream 1123027 75327772 ~ 75328195 (+)
G748432 NA other downstream 253354 76706730 ~ 76708278 (+)
G748905 NA other downstream 697287 77150663 ~ 77177349 (+)
G748917 NA other downstream 725968 77179344 ~ 77180128 (+)
G748959 LOC106569508 other downstream 813276 77266652 ~ 77272660 (+)
G749137 NA other downstream 849361 77302737 ~ 77382611 (+)

Expression


Co-expression Network