LOC110530663 (LOC105020301)


Basic Information

Item Value
gene id LOC110530663
gene name LOC105020301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77181864 ~ 77210814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613888.2
GACAGCCGCTCGATCGATGCAAAGGTTACATTTTATCCTAGCATGCTACTTCAAGACGCATACGCACTGCAGAGCTTACTGAAATATAAGTGTTTACAAAAAATGGTAAAAATTAGATTGATTTCCGTGGCTATGTAGCAGTTGCCTGATGGTGGATGCACTTTTGGGATTTCGGATTTGCACGGACGCCCGTGTGTCTGCTCTCTCACTAGTAAAGTGGCTTCATGAGTGTCCAAAGTAACAGTGGAAGTGGTGGTGGAAGTTTGGAGGCGACGCCATCTTGGTCGCAGCTATCCTCGTCCCTAACGATTTCTCAACAACACATAACGGCCACCACCAAGACCAAGGAAGGCCCCATGGAGGAGCTGCACAGCCTGGACCCTCGCAGGCAGGAGCTTCTGGAGGCCAGGTTCATGGGTGCGGTCAGCGGCAACACCGTAGGAAGCAGCGCCAGCGGCGGGGCCAAGGGTCTGGCCAACGAGTGCTCCAACCACAGCTATGGCAGTCTCGGCTCTTCCAGCGACAAAGAGTcagagAACTCTGATATGAAGAGGGGGAGTTCTCCTGCATATTCTACCCCTGAGAAGAAGCACTCTGAGTCGCccagaggaaggaagaggaaagCTGACATCCAATCGGAGAACAGCCAGGGGAAGACTTCCACACGGGGGCCCAAGATCAGTGACTACTTTGATTTCCAGGGGGGGAGTGGCTCCAGTCCGGTGAGGGCTCTACCCCAGTTCCTCCGCTCACCACAGAACTCCCACCAAGGTGCTCACTCTGCACCTGGCTCTAACATCAGACAGAACAGCTCCTCTCCTACCAGTCTGTGTTTCGGAGATCACCTGATGAACCACAAAGCCTCCTCCAGCAAGTGTGTTCAGacagaGTTGACAGGTCTGAAACTGGCTGCTCTGGAGAGCAACAAGAGTCTGGACCTGGAGAAGAAAGAGGGACGCATAGATGACCTGCTTAGGGCCAACTGTGACCTGAGGAGACAGATTGATGAACAGCAGAAACTCCTGGAGAAATACAAGGAGAGACTGAACAAATGCATCACAATGAGCAAGAAACTACTCATAGAGAAGAGCACCCAGGAGAAGCAGTCGTGCAGAGAGAAGAGCATGCAGGACCGTCTCAGACTGGGTCACTTCACCACTGTACGACATGGAGCCTCCTACACTGAACAGTGGACCGACGGATACGCATTCCAGAACCTTGTCAAGCAGCAGGAGGGTATCaaccagcagagagaggagattgAGCGTCAGAGGAAGCTGCTAGCCAAAAGGAAGCctcccaacccctcctcctccccctccctctccttaggAACCACCTCCGAACCCAAACAGCGCAAAGCCAAGGTTGTAAACGGCAATGACCCCGACCCTTTCCTCAAACCCTCCCTGCCTCAgatgttGACTCTGGCTGAGTATCATGAGCAAGAGGAGATCTTCAAGCTTCGCCTGGGACACCTGAAGAAGGAGGAGGCTGAGATCCAGGCAGAgctggagaggttggagagggtGAGGAACCTCCACATCCGAGAGCTGAAGAGGATCAACAATGAGGACAGCTCATCgtttAAAGACCACCCCACTCTGAATGAGAGGTACCTGCTGCTGTATCTGCTAGGCAGAGGAGGCTTCAGTGAAGTCTATAAGGCCTTTGACCTGTTTGAGCAGCGCTACGCAGCCGTTAAAATCCACCAACTCAACAAGaactggagagaggagaagaaggagaactATCACAAGCATGCCTGTAGAGAATACCGGATACACAAACAGCTGGACCACCCCAGAATAGTCAAACTCTACGACTACTTCTCCCTGGATACAGACACGTTCTGTACGGTTCTAGAGTTCTGTGAGGGGAACGACTTGGACTTCTATCTGAAACAGAACAAGCTGATGTCAGAGAAGGAGGCGCGGTCTATCGTCATGCAGATAGTCAATGCCCTGCGATACCTCAACGAGATCAAACCCCCCATCATACACTACGACCTcaaaccagGTAATATCTTGCTGGTGGATGGGACTGCATGTGGAGAGATAAAGATCACAGACTTTGGGCTGTCTAAGATCATGGATGATGACAACTATGGTGTGGACGGCATGGACCTCACCTCACAGGGAGCTGGCACATACTGgtacCTTCCCCCAGAGTGTTTTGTAGTAGGCAAGGAGCCTCCTAAGATCTCTAACAAAGTGGACGTCTGGTCGGTCGGGGTCATCTTCTTCCAGTGCCTCTATGGACGGAAGcCATTTGGCCATAACCAGTCTCAGCAGGACATCCTTCAGGAGAACACCATCCTCAAAGCCACCGAGGTCCAGTTCCCTGCCAAGCCCCAGGCCAGCACAGAGGCCAAGGCGTTTATCCGGCGCTGTCTGGCCTACCGTAAGGAGGCTCGTTTCGACGTTCACCAGCTGGGCACTGACACGTACCTCCTCCCTCACATGAGACGCACCAACTCCTCAGGCTCCCTTCAGCCCGCCTCCTCCTCAATCTCCTCCTACTGAATGGCTGATGGACATGACTGACAGGCCCAACGGTCAATCCTATAGCAGAACTGATCCTAATATGGGAAATGGAGTGGTGTTGGGTATTCAGAATCCCCCAGCCGCAGTGAAAGGGACGTGAATTTGTTTGGCTGAATAGAATGGATGACACGTGAGAtggggaaagagaaagacagagtggagGTGGAGACAGTGCTAATGTTTCCAAGTAGCTTTGCACTGTGTTCTGATCCTGAAGGTGtacctgc
>XM_021613889.2
GACAGCCGCTCGATCGATGCAAAGGTTACATTTTATCCTAGCATGCTACTTCAAGACGCATACGCACTGCAGAGCTTACTGAAATATAAGTGTTTACAAAAAATGGTAAAAATTAGATTGATTTCCGTGGCTATGTAGCAGTTGCCTGATGGTGGATGCACTTTTGGGATTTCGGATTTGCACGGACGCCCGTGTGTCTGCTCTCTCACTAGTAAAGTGGCTTCATGAGTGTCCAAAGTAACAGTGGAAGTGGTGGTGGAAGTTTGGAGGCGACGCCATCTTGGTCGCAGCTATCCTCGTCCCTAACGATTTCTCAACAACACATAACGGCCACCACCAAGACCAAGGAAGGCCCCATGGAGGAGCTGCACAGCCTGGACCCTCGCAGGCAGGAGCTTCTGGAGGCCAGGTTCATGGGTGCGGTCAGCGGCAACACCGTAGGAAGCAGCGCCAGCGGCGGGGCCAAGGGTCTGGCCAACGAGTGCTCCAACCACAGCTATGGCAGTCTCGGCTCTTCCAGCGACAAAGAGTcagagACCCCTGAGAAGAAGCACTCTGAGTCGCccagaggaaggaagaggaaagCTGACATCCAATCGGAGAACAGCCAGGGGAAGACTTCCACACGGGGGCCCAAGATCAGTGACTACTTTGATTTCCAGGGGGGGAGTGGCTCCAGTCCGGTGAGGGCTCTACCCCAGTTCCTCCGCTCACCACAGAACTCCCACCAAGGTGCTCACTCTGCACCTGGCTCTAACATCAGACAGAACAGCTCCTCTCCTACCAGTCTGTGTTTCGGAGATCACCTGATGAACCACAAAGCCTCCTCCAGCAAGTGTGTTCAGacagaGTTGACAGGTCTGAAACTGGCTGCTCTGGAGAGCAACAAGAGTCTGGACCTGGAGAAGAAAGAGGGACGCATAGATGACCTGCTTAGGGCCAACTGTGACCTGAGGAGACAGATTGATGAACAGCAGAAACTCCTGGAGAAATACAAGGAGAGACTGAACAAATGCATCACAATGAGCAAGAAACTACTCATAGAGAAGAGCACCCAGGAGAAGCAGTCGTGCAGAGAGAAGAGCATGCAGGACCGTCTCAGACTGGGTCACTTCACCACTGTACGACATGGAGCCTCCTACACTGAACAGTGGACCGACGGATACGCATTCCAGAACCTTGTCAAGCAGCAGGAGGGTATCaaccagcagagagaggagattgAGCGTCAGAGGAAGCTGCTAGCCAAAAGGAAGCctcccaacccctcctcctccccctccctctccttaggAACCACCTCCGAACCCAAACAGCGCAAAGCCAAGGTTGTAAACGGCAATGACCCCGACCCTTTCCTCAAACCCTCCCTGCCTCAgatgttGACTCTGGCTGAGTATCATGAGCAAGAGGAGATCTTCAAGCTTCGCCTGGGACACCTGAAGAAGGAGGAGGCTGAGATCCAGGCAGAgctggagaggttggagagggtGAGGAACCTCCACATCCGAGAGCTGAAGAGGATCAACAATGAGGACAGCTCATCgtttAAAGACCACCCCACTCTGAATGAGAGGTACCTGCTGCTGTATCTGCTAGGCAGAGGAGGCTTCAGTGAAGTCTATAAGGCCTTTGACCTGTTTGAGCAGCGCTACGCAGCCGTTAAAATCCACCAACTCAACAAGaactggagagaggagaagaaggagaactATCACAAGCATGCCTGTAGAGAATACCGGATACACAAACAGCTGGACCACCCCAGAATAGTCAAACTCTACGACTACTTCTCCCTGGATACAGACACGTTCTGTACGGTTCTAGAGTTCTGTGAGGGGAACGACTTGGACTTCTATCTGAAACAGAACAAGCTGATGTCAGAGAAGGAGGCGCGGTCTATCGTCATGCAGATAGTCAATGCCCTGCGATACCTCAACGAGATCAAACCCCCCATCATACACTACGACCTcaaaccagGTAATATCTTGCTGGTGGATGGGACTGCATGTGGAGAGATAAAGATCACAGACTTTGGGCTGTCTAAGATCATGGATGATGACAACTATGGTGTGGACGGCATGGACCTCACCTCACAGGGAGCTGGCACATACTGgtacCTTCCCCCAGAGTGTTTTGTAGTAGGCAAGGAGCCTCCTAAGATCTCTAACAAAGTGGACGTCTGGTCGGTCGGGGTCATCTTCTTCCAGTGCCTCTATGGACGGAAGcCATTTGGCCATAACCAGTCTCAGCAGGACATCCTTCAGGAGAACACCATCCTCAAAGCCACCGAGGTCCAGTTCCCTGCCAAGCCCCAGGCCAGCACAGAGGCCAAGGCGTTTATCCGGCGCTGTCTGGCCTACCGTAAGGAGGCTCGTTTCGACGTTCACCAGCTGGGCACTGACACGTACCTCCTCCCTCACATGAGACGCACCAACTCCTCAGGCTCCCTTCAGCCCGCCTCCTCCTCAATCTCCTCCTACTGAATGGCTGATGGACATGACTGACAGGCCCAACGGTCAATCCTATAGCAGAACTGATCCTAATATGGGAAATGGAGTGGTGTTGGGTATTCAGAATCCCCCAGCCGCAGTGAAAGGGACGTGAATTTGTTTGGCTGAATAGAATGGATGACACGTGAGAtggggaaagagaaagacagagtggagGTGGAGACAGTGCTAATGTTTCCAAGTAGCTTTGCACTGTGTTCTGATCCTGAAGGTGtacctgc

Function

NR:

description
serine/threonine-protein kinase tousled-like 1-B isoform X2

GO: NA

KEGG:

id description
K08864 TLK; tousled-like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613888.2 False 2773 mRNA 0.53 22 77181864 77210814
XM_021613889.2 True 2734 mRNA 0.53 21 77181864 77210814

Neighbor

gene id symbol gene type direction distance location
slc25a12 LOC106569494 coding upstream 26300 77127486 ~ 77155564 (+)
LOC118965635 NA coding upstream 92559 77087135 ~ 77090382 (+)
LOC110530659 LOC106569500 coding upstream 135417 77019461 ~ 77046447 (+)
LOC110530656 LOC106600124 coding upstream 461336 76526810 ~ 76720528 (+)
LOC110530655 LOC106569480 coding upstream 728488 76451222 ~ 76453376 (+)
LOC110530673 NA coding downstream 101587 77312401 ~ 77344087 (+)
LOC110530672 NA coding downstream 161373 77372187 ~ 77377386 (+)
LOC110530676 NA coding downstream 174767 77385581 ~ 77386837 (+)
LOC110530677 LOC106569510 coding downstream 251989 77462803 ~ 77467237 (+)
LOC110530678 LOC106569511 coding downstream 267533 77478347 ~ 77541551 (+)
G748919 NA non-coding upstream 568 77180597 ~ 77181296 (+)
G748903 NA non-coding upstream 8701 77143204 ~ 77173163 (+)
G748904 NA non-coding upstream 37218 77144278 ~ 77144646 (+)
G748900 NA non-coding upstream 47425 77133769 ~ 77134439 (+)
G748890 NA non-coding upstream 70756 77110889 ~ 77111108 (+)
G748895 NA non-coding downstream 368 77211182 ~ 77212460 (+)
G748930 NA non-coding downstream 5128 77215942 ~ 77216154 (+)
G748931 NA non-coding downstream 5702 77216516 ~ 77217032 (+)
G748933 NA non-coding downstream 10257 77221071 ~ 77221307 (+)
G748935 NA non-coding downstream 11543 77222357 ~ 77222866 (+)
G748917 NA other upstream 1736 77179344 ~ 77180128 (+)
G748905 NA other upstream 4515 77150663 ~ 77177349 (+)
G748432 NA other upstream 474220 76706730 ~ 76708278 (+)
G747987 cah12 other upstream 787535 76239950 ~ 76394329 (+)
G748959 LOC106569508 other downstream 55838 77266652 ~ 77272660 (+)
G749137 NA other downstream 91923 77302737 ~ 77382611 (+)
LOC110530993 LOC106569518 other downstream 673423 77863590 ~ 77887401 (+)
G749663 tcf3 other downstream 1033396 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1586328 78797142 ~ 78797548 (+)

Expression


Co-expression Network