LOC110530673


Basic Information

Item Value
gene id LOC110530673
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77312401 ~ 77344087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613911.2
caaagcagagtacggCCCTGTGTACTGGTTATGTGTATGTAGGCTACAAGAAGCACCTATTAGTCAGTTTCAATCCTGGGATCTGTTGACAgaaaagagagaaacaaacacagTCAAGACTAGATTCTGGTGGTAGGCTGCACAAGAAGGTTGGCCACGGTTGGAAGGGGTTTCATGAGTTGTTTCATCATTTTTCTGTCCCATCCCAGAATTGTTATTGTCGATAAGGGATATAAGGAACATAGAATTTGGCTGCCCTGGTCCTCGACACGGCCTGATGCTGCTTCACTGGCTAGCCAACAATATTCAAATTGACAACATGACACTCAATTTCAACGCATCCAGGAAAGACTATGGCATTCATTTCTATGGAAACGCTGATATCCCCAGTCCGTTACCTTCACTGTCCAGTCTCCATGTAAGGTACTACTCACTAGGGAATATTGGTCGCAATAACAGCAACAATGATGCTATGGCACTTCCTTATTATGTAACTCGAAAATTCTACAACTCAAGGGGGACTGAGAACAACAGGGACAGGGTCATACTCAGAGTTAGGAACGAAGGGTCCAATCAGCAAAGTGTGGACGAGGTCTATGTCACACAGCACTATCCACCAAATGGAAACAGAGGAAGTGGCTATGATCCAGACAATACATACCGTGTCAATGTCAGCCTACTTAGACAAATCCAAAGTCTACCAACCATTAACCTAAATGTTATTCCACAAACATATCATGTAGAGATCAACCACAACAGTCTGCAGAGTCTGAAAAACACCTGGGGAGGCACACCTGGTCTGGTACTTCTTCTGGCTCTTGTATTGCACTTTACACGTCCCAATATCTTATTTAAGGAGCAAGCTCTTCGTTTAACATCTCAACCCCAGAGTTGAGGTGAAAACCACAGATAGAGGGAAAGCCAGGATCATCTGGAGTGGGATCCCCAAGAGGCTATTAGACCAGGGTGTAATGGTGGTGCTTTATAAGAGCAATGGAAGTGAAAGCAAACTAGACAGGGCCTCGGTCAGGGGCAAGCCTCAGTACCCCTCAACCCTGGTCTCCAGGTCAGGCTCCACAAGAAGGTAATGATcttgtgtgtacagtgccttgcgaaagtattcggcccccttgaactttgtgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaa
>XM_021613912.2
caaagcagagtacggCCCTGTGTACTGGTTATGTGTATGTAGGCTACAAGAAGCACCTATTAGTCAGTTTCAATCCTGGGATCTGTTGACAgaaaagagagaaacaaacacagTCAAGACTAGATTCTGGTGGTAGGCTGCACAAGAAGAATTGTTATTGTCGATAAGGGATATAAGGAACATAGAATTTGGCTGCCCTGGTCCTCGACACGGCCTGATGCTGCTTCACTGGCTAGCCAACAATATTCAAATTGACAACATGACACTCAATTTCAACGCATCCAGGAAAGACTATGGCATTCATTTCTATGGAAACGCTGATATCCCCAGTCCGTTACCTTCACTGTCCAGTCTCCATGTAAGGTACTACTCACTAGGGAATATTGGTCGCAATAACAGCAACAATGATGCTATGGCACTTCCTTATTATGTAACTCGAAAATTCTACAACTCAAGGGGGACTGAGAACAACAGGGACAGGGTCATACTCAGAGTTAGGAACGAAGGGTCCAATCAGCAAAGTGTGGACGAGGTCTATGTCACACAGCACTATCCACCAAATGGAAACAGAGGAAGTGGCTATGATCCAGACAATACATACCGTGTCAATGTCAGCCTACTTAGACAAATCCAAAGTCTACCAACCATTAACCTAAATGTTATTCCACAAACATATCATGTAGAGATCAACCACAACAGTCTGCAGAGTCTGAAAAACACCTGGGGAGGCACACCTGGTCTGGTACTTCTTCTGGCTCTTGTATTGCACTTTACACGTCCCAATATCTTATTTAAGGAGCAAGCTCTTCGTTTAACATCTCAACCCCAGAGTTGAGGTGAAAACCACAGATAGAGGGAAAGCCAGGATCATCTGGAGTGGGATCCCCAAGAGGCTATTAGACCAGGGTGTAATGGTGGTGCTTTATAAGAGCAATGGAAGTGAAAGCAAACTAGACAGGGCCTCGGTCAGGGGCAAGCCTCAGTACCCCTCAACCCTGGTCTCCAGGTCAGGCTCCACAAGAAGGTAATGATcttgtgtgtacagtgccttgcgaaagtattcggcccccttgaactttgtgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaa
>XR_002474569.2
caaagcagagtacggCCCTGTGTACTGGTTATGTGTATGTAGGCTACAAGAAGCACCTATTAGTCAGTTTCAATCCTGGGATCTGTTGACAgaaaagagagaaacaaacacagTCAAGACTAGATTCTGGTGGTAGGCTGCACAAGAAGGTTGGCCACGGTTGGAAGGGGTTTCATGAGTTGTTTCATCATTTTTCTGTCCCATCCCAGAATTGTTATTGTCGATAAGGGATATAAGGAACATAGAATTTGGCTGCCCTGGTCCTCGACACGGCCTGATGCTGCTTCACTGGCTAGCCAACAATATTCAAATTGACAACATGACACTCAATTTCAACGCATCCAGGAAAGACTATGGCATTCATTTCTATGGAAACGCTGATATCCCCAGTCCGTTACCTTCACTGTCCAGTCTCCATGTAAGatgagattgggcagtgtgcagtgtgatggctatTGCATCATcggtggacctgttggggcggtatgcaaacttgGGGTcggtgttacgcacgcctctgtGAAGAGGGAACACAACaacctgctacaactcaaccctctgtgaagtgaaagaggtatgggactgtaggtgcgagtaaggatgacaaaaggcagaGAATTTACCGTTTACAAGGAATTTATTCCGTCATACgataatatggggaaaaggggctggacggaaccaaagccccctctcctatcttacctgcctacccaatATTTATCTAACTTAGCCCCACCTGgtgcgctaaccaaaatacagggggtggtctgcccaggtcttacctaatgtgcctagacagtgaatatactacgggtaaatgtatgcccgcgggcctcttgcgtaagcactccctaggtgccttccccttcccccctgggaacaaatgaaacagaattaTCCAAATGTAAGTAAACAATTTCAAGAATCAAAAACACAGTTCTATTAGCACACACATACCTCAAATCAGCGGCTACAACAATACTTAACAAAACCTGTCTCTGAGCCACAACCAAGACAGGACATCAAATCAGCTCTCTtggtaattggagacagctgcgtcCTGACGAGAGggggggtcagctctccaattagccatggagtcgaccaatcagctacTTGggggggatttcaggaagccattttgAAACAGACACCTAacaaaccacaacacagaaactgggtaACGTAACAGTCGGCATGCAAACTTGGGGTcagcaggtattctagtggttagagttttggactagtaaccgaaaggttgcaagattgaatccccgagctgacaaggtacaacatctgtcgttctgcccctgaaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106590896

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613911.2 False 1204 mRNA 0.45 4 77312401 77328589
XM_021613912.2 False 1144 mRNA 0.44 4 77312401 77328589
XR_002474569.2 True 1320 mRNA 0.47 5 77312401 77344087

Neighbor

gene id symbol gene type direction distance location
LOC110530663 LOC105020301 coding upstream 101587 77181864 ~ 77210814 (+)
slc25a12 LOC106569494 coding upstream 156837 77127486 ~ 77155564 (+)
LOC118965635 NA coding upstream 223096 77087135 ~ 77090382 (+)
LOC110530659 LOC106569500 coding upstream 265954 77019461 ~ 77046447 (+)
LOC110530656 LOC106600124 coding upstream 591873 76526810 ~ 76720528 (+)
LOC110530672 NA coding downstream 28100 77372187 ~ 77377386 (+)
LOC110530676 NA coding downstream 41494 77385581 ~ 77386837 (+)
LOC110530677 LOC106569510 coding downstream 118716 77462803 ~ 77467237 (+)
LOC110530678 LOC106569511 coding downstream 134260 77478347 ~ 77541551 (+)
LOC110530679 LOC106569512 coding downstream 199433 77543520 ~ 77547016 (+)
G748964 NA non-coding upstream 38473 77272994 ~ 77273928 (+)
G748951 NA non-coding upstream 48394 77246201 ~ 77264007 (+)
G748957 NA non-coding upstream 50601 77261180 ~ 77261800 (+)
G748946 NA non-coding upstream 75815 77236309 ~ 77236586 (+)
G748945 NA non-coding upstream 76769 77235407 ~ 77235632 (+)
G749252 NA non-coding downstream 88692 77432779 ~ 77433139 (+)
G749277 NA non-coding downstream 105908 77449995 ~ 77450329 (+)
G749337 NA non-coding downstream 207247 77551334 ~ 77551641 (+)
G748959 LOC106569508 other upstream 39741 77266652 ~ 77272660 (+)
G748917 NA other upstream 132273 77179344 ~ 77180128 (+)
G748905 NA other upstream 135052 77150663 ~ 77177349 (+)
G748432 NA other upstream 604757 76706730 ~ 76708278 (+)
LOC110530655 LOC106569480 other upstream 859964 76451222 ~ 76453376 (+)
LOC110530993 LOC106569518 other downstream 540150 77863590 ~ 77887401 (+)
G749663 tcf3 other downstream 900123 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1453055 78797142 ~ 78797548 (+)
G750854 NA other downstream 1635143 78979230 ~ 78979981 (+)
G750935 NA other downstream 1851183 79195270 ~ 79197378 (+)

Expression


Co-expression Network