LOC110530672


Basic Information

Item Value
gene id LOC110530672
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77372187 ~ 77377386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613909.2
CTCCGTTTTTCTGACCCTCGTATTGTATCTGCCCTGTGTACTGGTTATGTGTATGTAGGCTACAGGAAGCACCTTTTACTTAGTTTCAATCTTGGTATCTGTTGACAgaaaagagagaaacaaacacagTCAAGACTAGATTCTGGTGGTAGGCTGCACAAGAAGGTCGACCATGGTTGAAAAGGGCATCCTGGGTTGTTTCATcttgtgtctgtctctgacctCAGTATGCGCTGTCAGAGGAACCCTTAGTTCAATAAAGGACCTCAAGGGAATAGAGTTTGGTCACACCTTTCCTCGACACGGCCTCATGCTGCTCCACTGGCTAGCCAACAACATTTACATTGACAACAACGGCAACATGAGACTCAATTTCAACCCAACCAGGGGAGACTATGGCTTTCATTTCTATGGAAACAGACCACCTTCATTACCTATTCTGCATCCTGAAAGCGGAAGTTACTACTCACTAGGGAATATGAACAGTAATGGCTCATGGGCACTTCCTGATTATGTAACTCAAAGATTCTACAACTCAAGGGGACCTGAGAACAACAGGGACAGGGTCATACTCAGAGTTAGGGAGGATGGGTCCAATCAGTTCATAGTAGACGAGGTCTATGTCACACAGCACTATCAACAAAATGAAAACAGAGGAAGTGCCTATGATCCAGCCAATACATACCGTGTCAATGTCAGCCTCCTTAGACAAATCCAACGTCTCGCAACCATTGACCAAAATGACATTCCACGTATATATAATGTAGAGATCAACCACAACAGTCTGCAAGACCTGGAAAACATTTGGGGACATACACCTGGTATGGCACTTCTTCTGGCTATTGTATTGTCCTTAACACTTCCCAAACTCAAAGGCCGTTGTGCGCGGGCAGTTGAAACCCAAAGTGTCATGGAGGATAAGGATAATACATTGATTAAGCTTGAGGTGAAAACCACAGATAGAGGAAAAGCCAGGATCATCTGGAGTGGGATCCCCAAGAGGCTATTAGACCAGCGTGTAATGGTGGTTCTTCATAGGGACAATAACAGTGACAGTAAGAGCGAGCTGGACAGATCGTCAGTCGGGGGCAAAGCCTCTGGAAGCTATAACACCTCAGTACCCCTTAACCCTGGTCTCCAGGTCCGGCTCCATAAGGAGGTAAAAAAATGGTGGAATTACTTTTGGTTTGGGTCCACTATCGGAGAGGAGATCTGGAGAGGTTCTGAGTTTCACGATGCCAACAGAGAGATTCCTGTTGATATTAATGGACATGACGCCAGTCTGCAGCTCTTCGTAAAGGATGGAAAGGCCTGCGCTCGTCTGTATGTAAAGAAATCCTTCACTGCCTGGAAGAAAACGTTTCATAACTCCTGGGTTGGGTTCTACTCTTCCCTTAACAAATCCATGCTCAACTATAATACCTGGAAATGGGCAGTGTCTTTTTCTAAGGAAATACGATCAGATTTGGAGGATGTACCTGAGCATGATGTCTATGTGTATTACTCCAGTATGGTTATGTCTCCTGGTGTCCAGGCCAGATTCATGCTGCAGAGAAGATCCAGTGAAGTAGCCCGTACTCTGCCCTGGGAGAGAGTTGAGCTCAGCGCGACCAGACCATATCACAGAGAGCTTTAGAGATGAGCTGTTATTACTGTTTTTACTGTTATTACTGTTTTTTTACTGTTATTGAGTTATTTAGGTTACTTATCCACTCCAAATACATTTGTATCACTTTCCAGTAACTCATAAGACTCTTGACAGAATATTGATGAGGTAAagtgtattttgaatgagttatGATAGGATTTAGCTTTGGCCGGGCCATCCAATCCCAGCCCACTACAccgtccttcctccctctcctttctcccttcaCACCTGGAGTATGTGTTGTTCTACTGAGAACAGAAGTCGTTCCCTCCAATATGATCGGACTCTTAATTACGTTATTTAGCTGACATGTCCCATGTCCATGCTACATGATTCAGACCCCATGACGCTGAAATGTCAGTGTGAGCTTATTTCCGTCCCCCACCTCCCTTTTGAATGaccagtgtagtgtagtgcagtgcagCATGTGTgcttgtttctgtgtgtgtgtaagagagagatagagagagattacCCTGTACTTTTAATTACCCATCATAATTCATGGATCTATTAACCATGGGCCTACAGTATTAACCTCTGGTGGGTTTGGTGTGGTAATCCAGAGTTTGTGTTGATTGAACCAGTGTTTGCCTAGTGGGTAGTTTGTGTTGGGATGGTCACAGGTAGATCTGTAACAATcgcagatagagagacagagctgaAAAAGGAATCAGCCATGACTAACCAGTGACCAGCCAGTCCTGGAGctttacatgttgaccagaccgGACATGTTGTGTGCGCGagggttgcaaaataaatgtacacatacatattATTCAGTCATTGCACTCACACTGCTTGTGGGCGTCAGCGAGCATCTGCgtggccaggcgctaaaatagaaatcggttctatttgtgatgctcaACACGCTGCAAGTccggcctctcccatctcctcataggtttttagaagcatatacccacgtgggtgattgaaagattcaTTTAGGTCCACACTCCGGTAGGTTGTAGTAATgctgtaaagttggttgccaaccgccatattaagtcaaaaataataataagaagcctgaggaaggaggagagatgacgagaTAAAACGGTAAACCGAATTcctatctgtggattaattgtgggtgtagaggaccttgtgcatttcaggtaaaataagaacccaatgtttatatcccaggacaaattagctttcaacagcaagctagctagctaaattgtcaTAAATGTTTAATGATTTTTGACCTCTCCCCAAATtcatataattggttcagagtctgttttgatatttcaacctgatCGCTTCTGGTGTGGGTAAACAAAATCAACGTGCGTATGATGGCACACGGTCGCTCGCGTGTGtccggtttggtcagcatgttagtaTGATGTAGCAACTGATTTAGACAAACCAAAATAATTCACTCTCAGACCAATCAGGGGCATAAATGGGTCAGTTAAGTGCCAGTCAAAGGACAATCAGCAGATACTGTGGCTCCCAGGAACCCATGGTGCACACCTCTGGTCTAGCCACAGCTCTGTGATGTACTGCCCTCTATTGGTCATTATAAAGCATTATATTTATCACGCATAGCCAACATGGAGGACAACTCATGGCTGAGTTTCATTTCAGTAGAGTTGTTCTCGTCCTTCTACGCTAAATACCTTGCCCTGAACAGTTGGTAGCTTGTTGCTTAGGAGCAGAAGAACGTTGCCATAACTTTTCCTGAAACATAAAGTCTTGTCTCCCAGGGTGAAGGCAGTGGAGGGAATCAACACTGTACGCAATTTCAACAGTGTGATTTTCCTGTTTCTAAGCAACAAGTTAAACATATCTTTGTATTTATGAAAGGTACAGTTTGTGTTTGTTTATTAGTCATGCATCTACTAACATTTTCATTTAGGTTATTTTACACAATGGGTTAGAATACATTTATATACTAAATACACATTTTGTTTAATATAGGTAGAATGAATAAGGTTATAATGACCGGAAAATGTGATAAGGGTAGAAAGAAGAAACCTACTTTTTGGAATGAAACTCAGCCCTGAGCCCTCCTTCATGTGAGAGAAACACAGTACATTCTACGATTTAGGAGGGCATGTAACAACGGTTAATGTAATAGAGTTTCTATGTAATAAAATATAATTTGCCGGATAACCTGGTTAAATGTTGAACGGTTAACGTATGAACTTTTCCACTAAATGTAATACGTTATTACGTTACCCACTGGTTATTACGTATTCAGgcaaatacatatattttttaagaataacaataataacTTCAACCAGTCTTGTAATAACATACTGTTATggatgtttgtgcttttctaataaccaatttctgagttcatgcaagtgactgactgAATGTATACCTGGGaagaatcctcactatcagtagagcaatttggcagtacgcccagaaccttgttttgagaacaaaGGGATATCTCAgattcaaggtctcagcttggagagaagaagccttgtgaggtattggtctgtcacatgcatgAACTAAACGTTAATGAGGAATTAATTATGAATTATCTAAATCATGCAACTATAACTTGCCTGTGTAAGCAGTATGTAAGAGAACTAATGAGACTGCCCCAGCGGAGCTCACTTCAGACTGGTACTTTATGCATCTAAGTTTGACCTCCCCAGCTTGCTGTTAAtaaactatttatttatttatttacttttctgctcttttgcacaccaatgtGCGAAACagcctgtacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcct

Function

NR:

description
uncharacterized protein LOC110530672

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613909.2 True 4441 mRNA 0.42 2 77372187 77377386

Neighbor

gene id symbol gene type direction distance location
LOC110530673 NA coding upstream 28100 77312401 ~ 77344087 (+)
LOC110530663 LOC105020301 coding upstream 161373 77181864 ~ 77210814 (+)
slc25a12 LOC106569494 coding upstream 216623 77127486 ~ 77155564 (+)
LOC118965635 NA coding upstream 282882 77087135 ~ 77090382 (+)
LOC110530659 LOC106569500 coding upstream 325740 77019461 ~ 77046447 (+)
LOC110530676 NA coding downstream 8195 77385581 ~ 77386837 (+)
LOC110530677 LOC106569510 coding downstream 85417 77462803 ~ 77467237 (+)
LOC110530678 LOC106569511 coding downstream 100961 77478347 ~ 77541551 (+)
LOC110530679 LOC106569512 coding downstream 166134 77543520 ~ 77547016 (+)
LOC110530680 LOC106569513 coding downstream 181965 77559351 ~ 77763821 (+)
G748964 NA non-coding upstream 98259 77272994 ~ 77273928 (+)
G748951 NA non-coding upstream 108180 77246201 ~ 77264007 (+)
G748957 NA non-coding upstream 110387 77261180 ~ 77261800 (+)
G748946 NA non-coding upstream 135601 77236309 ~ 77236586 (+)
G748945 NA non-coding upstream 136555 77235407 ~ 77235632 (+)
G749252 NA non-coding downstream 55393 77432779 ~ 77433139 (+)
G749277 NA non-coding downstream 72609 77449995 ~ 77450329 (+)
G749337 NA non-coding downstream 173948 77551334 ~ 77551641 (+)
G748959 LOC106569508 other upstream 99527 77266652 ~ 77272660 (+)
G748917 NA other upstream 192059 77179344 ~ 77180128 (+)
G748905 NA other upstream 194838 77150663 ~ 77177349 (+)
G748432 NA other upstream 664543 76706730 ~ 76708278 (+)
LOC110530655 LOC106569480 other upstream 919750 76451222 ~ 76453376 (+)
LOC110530993 LOC106569518 other downstream 506851 77863590 ~ 77887401 (+)
G749663 tcf3 other downstream 866824 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1419756 78797142 ~ 78797548 (+)
G750854 NA other downstream 1601844 78979230 ~ 78979981 (+)
G750935 NA other downstream 1817884 79195270 ~ 79197378 (+)

Expression


Co-expression Network