LOC110530677 (LOC106569510)


Basic Information

Item Value
gene id LOC110530677
gene name LOC106569510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77462803 ~ 77467237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613915.2
cgcatggctgtgtgctcgattttatacacctatcagcaacggTTCTGGctgaaatccactaatttgaagggatgttcAAATACTTCTGGCCAGGTAGTGTAAGATACAACAAATTGAACAAAATCAAAACGTCTGGGAGTTGAGACAAGAATGGAGGTAGAATGTctgagtagtggagagaggaggaataatcTTGTCCACAGACAGGGAGGTCGTTAATGTTATTGTTTGCAAATACAATGAGTTGGCTATACGAAATAGCACGGAAACACTGATTTGCCCCGCGGTTAACATCAAAACACGTATTTAAGCAAATTACATTCTATTTTGAGGAGGGCGGGTGGACAGCTTGGGAACCtcccactggcttccagtcaccATGGAGAGCGCGGCGCGCGGGGTCCATATATAACCCAGAGGTGAAACTGAATCATCAGAGCCCCAACTATGTGTTTTGTGCCCAACAGTTAGGTTACTGTGTCTATGTAAAGTAGGTTAGCTAGGCAACCCATGTGAGGTGAATTACGGAAAGTATtgaggggacacagacacacgcatgtgAGGGAAGTTGGAACATTTTCTGTTTTTATCGGGAGTTCAGCAGGAGAGCGAGAGTAACACTTCAGCACAACGCTAGCTTCAGGCCCTGGAGGGAAGCATGTGGCTCCTGGAGAAGTTCCGTGGCCCTCACAATGGTCACTCTGCATCGGCAGGGGACAAGCAGCAGAACCAGACTGGCCCCGTCTCCGTCTATAACAACATCATCACCCCTGATAAGATCCCTGACTTCTTCATCCCCCCCAAACTCATCTGCTGCCCTTCAGAGGCAGAGTGCCTAACTCCGGAGACCCAGCCCCGCTCTACTCTGTGCCCCTCCGCCTCAGAGCACACCATCTGCAGCCAAACCCAGGGCAACTGCACCCGGAACTCCCGCAGCCCACGTCTGCTCTCCCAGCTGACTGGGGACACCCGCAGCCTCTTGAGGGCCGCTAATCGCCACGTCATCCAGATAGAGAGCGCTGACGACCCGGGGAGCGGGGTAGGGGAGGGGGGAGACCCTAACACCAATGCAGACCCCCAGTCCCAGACAGCCATGTCCCTGCCTTACGTCCCCAAAGCCCAGACCTCGTACGGTTTCTCCACGCTGGTGGAGAGCCCCCACACCCGCCGCAAGGAGTCCCTGTTCCACAGCAACCCCAACAGCCCCCACACCTCCCCGGGCTCCCAGAGACGCACCCAGGGTGGGAACCACCTGACCCCCTCCGACCCCAACCCTTACCGCTATTTCAGCGGGGGTGAGAGCGACACGTGCTCCTCAGCCGAGTCCTCCCCCtatacctcccctctcctcacccgcTCTGCCTCCCTCCTCCGATCCATCACCCAGGAGACGCAGGCCAAGGTGTCTCGTGCCAAGCGTACCCTGGCGCGCCACAGCTCCCTGTCCACAGACGAGTGCAGCTCAGCCGACAACAGCCCCAACCTGACACGCCGCCGCCTGCGCTGCCCTCCCTCCCCCGCCTTCCGCGGACGCAAGGGGACCGGCTCCGGGGGGGCAAGTTCAGACCTCCAGCGCGAGCACTCGGTCAACCTCCACAAGGGCGGCACGCTGAGAATCAGCATGCACTACGACGCCGAAACGGCCCGGCTGAGGGTCCGAGTGCTCGCCGCCGAGGACCTGTATGACAAACAGACGGACGTGAAGAGCATCAACTGCTGCGTGTCTCTGTACCTGAACCCAGGCAAGCAGCAGAAGCAGAGGAGCACCATCATCAAGAACAGCAGGAACCCCGTGTTCAACGAGGACTTCTTCTTTGACGCGGTGCCCGTCACCCAGGTCAAGAGCCTGGCCATGAAGATGAAGGTGGTGAACAAGGGGACCAGTCTGAAGAGAGACCTGCtgctgggggagagggaggtgctGCTCAGCGACCTGCTGCCAGGCTTCTAGGGACACAAAGATGCTCCCTCCCCTGGTTATCTCCCTTATCACTCTTCACTCGTTTACTCCATTTGCCTGATCTGATAGGGAATCATTTATGGTGGGCACTAGGTAGAGCTATTGCTTCACAGTTCACCTACCACAGTTCACCTACCACAGTTAACCTACCACAGCACACCTACCACAGCGCATTTACCACAGCACACCTAACACAGTTCACCTACCACAGCGCACTTACCACAGTTCACCTACCACAGCTCACCTACCACAGTTCACCTACCACAGTTCACCTACCACAGCTCACCTACCACAGTTCacctaccacaccacaccacagcaccCCTACCACAACATACctaccacaccacagcacacctACCACACCGCACCTACCACAGTACCCCTACCACACCACAGCACCTACCACACGTAACACAGCCCCCTACCACACCACAGCACCCCTACCACAGCTCACCTACCACAGTTCAGCTACTACCCAGTCAAGTCAGATCTGTGAAGGGGTTTGAACAAGAACAAAGGGGAGCAGACAACTTGTTGGAATGAAATGCGTCCAGGCTGTTTCTTCTGTCTGGATTGACTGAGATTGACTGAGATCAAACCCTGTGGTGGAGCGCTTTAGTGAAATTGGTCACCTTGGAGACCAGCATGTAGCAGATCAGAGTGAggaggtctgtgtgtgtatgtgtgtgtgtgtgggggggggggggggttctccacATTGTGGGTTTGATTTCATTCTAACATCACATTATCTTACCTATTGACAGCAGTAGTAAAGCTAGGTTTTTCTTGCTACATCTCCCCTCTTTATGTTGTATTGCTGAACTGTCTTTATTGATTCACTTGAGGGTATATTCATATTGTGTTATTCAGTACATGTGCAGTAGCTGGGTTCCATATCAGAAGTGAGGAAGCTGGATGATACTAGTGTGAGCTGTTAACAGTATATTTTGTAGTTATTCTGTACTTTTACCAGAATGTCATTTTGCATGCTCTTTGTTCTTAAACACATGTATCATGATCAATGGAAGATTCCTTAGTTTTAATTAAGAGCTGTAAAATCAGAATCAGTGTTAGATTGAACATATGGATATGATTGATGTTTGTGTGACACGTTGACTTCTATCTATTAAAAAGCTCTAGATCTTC

Function

NR:

description
C2 calcium-dependent domain-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613915.2 True 3112 mRNA 0.53 3 77462803 77467237

Neighbor

gene id symbol gene type direction distance location
LOC110530676 NA coding upstream 75966 77385581 ~ 77386837 (+)
LOC110530672 NA coding upstream 85417 77372187 ~ 77377386 (+)
LOC110530673 NA coding upstream 118716 77312401 ~ 77344087 (+)
LOC110530663 LOC105020301 coding upstream 251989 77181864 ~ 77210814 (+)
slc25a12 LOC106569494 coding upstream 307239 77127486 ~ 77155564 (+)
LOC110530678 LOC106569511 coding downstream 11110 77478347 ~ 77541551 (+)
LOC110530679 LOC106569512 coding downstream 76283 77543520 ~ 77547016 (+)
LOC110530680 LOC106569513 coding downstream 92114 77559351 ~ 77763821 (+)
LOC110530682 LOC106569515 coding downstream 242902 77710139 ~ 77728323 (+)
LOC110530992 LOC106569517 coding downstream 275112 77742349 ~ 77811376 (+)
G749277 NA non-coding upstream 12474 77449995 ~ 77450329 (+)
G749252 NA non-coding upstream 29664 77432779 ~ 77433139 (+)
G749137 NA non-coding upstream 80192 77302737 ~ 77382611 (+)
G748964 NA non-coding upstream 188875 77272994 ~ 77273928 (+)
G749337 NA non-coding downstream 84097 77551334 ~ 77551641 (+)
G749338 NA non-coding downstream 84551 77551788 ~ 77552025 (+)
G749347 NA non-coding downstream 106766 77574003 ~ 77575147 (+)
G749390 NA non-coding downstream 167330 77634567 ~ 77635923 (+)
G748959 LOC106569508 other upstream 190143 77266652 ~ 77272660 (+)
G748917 NA other upstream 282675 77179344 ~ 77180128 (+)
G748905 NA other upstream 285454 77150663 ~ 77177349 (+)
G748432 NA other upstream 755159 76706730 ~ 76708278 (+)
LOC110530993 LOC106569518 other downstream 417000 77863590 ~ 77887401 (+)
G749663 tcf3 other downstream 776973 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1329905 78797142 ~ 78797548 (+)
G750854 NA other downstream 1511993 78979230 ~ 78979981 (+)
G750935 NA other downstream 1728033 79195270 ~ 79197378 (+)

Expression


Co-expression Network