LOC110530682 (LOC106569515)


Basic Information

Item Value
gene id LOC110530682
gene name LOC106569515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77710139 ~ 77728323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986335.1
GCTGGCTGGTAACAGGAGAAAGCTGCCTCTCCCTCTAGCCATCTATCAGCTGCCTCTCTGTAGGCTAAAGCCAGGTAGGAGACTAGAAGGACAGGCTGGGTGTATACTGCAACACAGTGGAGTACAGAGTTGCTACGTTTGAGAGTTGGTTTACATAGTCAGTGCAAATACCGTGTGGAGTAGAGAGGAGCTcagtgggagtgggagagacGCTTAACCACTCCAGACCATGAACATGGAGCATCGGAGGTTCTCCCTCGACAGCTCAGTGTCCCTGAAgaatggtggtggaggaggtagtCTGGGCCGTAGGAGAGGCAGCCGCAGTAAGAAGAGCAAAGAGAAGTGGAAGAGTCTAGAGGAGGCCCAGCTGGAGATCCAGGAGCTGGGACACAGCCTGAACAGGAGCAACTCTCTCAGGTCAGAGACCATAGAGGAGGAGAGCTTCCACCCGCCTGATGGCGCCGTTGCCAAAAATAGTTTTGTGAAATACAACAAAACCTTCCACAAATTCTTCCGAGACATTCCTACAGAGGAGAAACTAACTCATGtgttcaccTGTGCCCTGCAGAAGGAGGTGTTGTATCATGGGAAGCTATTTGTGTCTGTCAACTACGTATGTTTTTACTCCTCCGTACTCCTCAAGGACACCAAGGTTGAGGTCCATGTGTCCAGCGTAAAGGAAGTGAAGAAGCAGAACTCAGCCCTGTCTATGCTCTCCATCCGTACTACTGATGGAAACAAGTATTCGTTTGTGTCTTTGCGGAACCGGAGAGTGTGTTATGAAATCCTGCAGTCTGTGTGTTCACAAGCACAGCTGGGGGAGCAGGTGGAGAATGGCAACAGCAGTCCCCACTTCTCAGGAGAGAACGGCGTTGATGGCGTGGATCGGGACACAATCTCCAGCAATTCCAGCCGGGAGGACAGTGTGGAGCGGAGCCTTCCTATAGAGGCCGTCTACTCTGACCTGCCCAGCAGCGCTGACTCGTGGGTTTGGATCGTCACTGAAAGGGTTAAAACCCTCCTACTTATCAGAGATATGCGCAACCTCAATGTCCTCCTATCCATCTGTCTGTTTCTggcGGTGTTGCTAATACTGTCATCGGGGTACATCGGTTTGCGGATCGTAGCTCTGGAGGAGCAGCTGAGTTCTCTAGGAGCCCTGCCGGAGCTCTCCATACACCTCAGAGAGGAACAGGAAACAGCCTGACGAGACCTACAGCCAGGGAGGATTGGCCATTTGGATATTCTGGCAAATACCAGACGGGCTGGACCATTTTTTTGTTGGGTGGGCTGGTTGAAAATGGACactttttattatatatatattttttaacgtTTGTTAAGAtagaaattgtaaaaaaaaataacactaATAATTCTGTTATGCTAATATGCccggagtatacaaaacattaagatggACCGGTCCGGTTTTCTGCTAGGCTGAGGTCACACAAACTCACATTGAAAGTCAAACACAGCATCAGCAAAGATGACCTGCTTCAACTCTGTCATCAGTTAGACAGCCAAGATCATGGatcattaaaaaaatgaaaagggTGCCTGTAAACGTAGAAAGAGCATATTCTACATTGTCACTTCACTGAAAAACATCTGAATTTTGGGACAGCTAAAGAAATGATTTTGCCAAACAGTGAAGTGcattatcctcatgattcctgtaatgaaAGTGTCTTCCCTATGCCCTCGCTGGGGCCTACTGCTGTGGTGAGCgagccactctcctctccttccacacaCTCGAGAGAAACATTTATTCTGATCATATAACATTTCAAAATGAAATTGCGGGAAAAAAACACAGCTTTGGAAGCTTCATCCAATTGTCCCTGTCGAAGAGAGGAGGGTTTCAGCTTTCTGTCGGTATAATCTTTATTTCTCAACTCTCATTAGCAACTATTTTACAATCAAGACATTTTATATGGCTTTGAGATATGGAGTGGAGTGTGCTCAAAACATGCACCAGCATAGGCCTCATGGGTAGTAGCCTACAACTGGACGTTTTTTTAGGACATTACAATTACGGTTGGATGAATACATGGCTACTAGCAGTGGGTATCACAGGCGGCTGGGGGCACCTTAATTGTGGaagacggctcatagtaatggctacaatggagttaatggaatggtatcaaacatatcaaaAACATTGTTGTTTCAAAgtgcttgataccattccatttacggCATTCCAGACATctttatgagccatcctcccctcactaGCCTCCGGTGGTGGGTAATATATTTAGAGTTTGATCTAATTAATGCGTTTTGAGTTTCCACTTCCTCAGGTGTTGAACCACAAATTAATTAGCCTATGATTTTAGTTAGTGCACATAAAACATGTAATTCATCTCtggaacaaacaaaaaaacgaatATGGATATTCTGGAATCCTATTTTGACAGTAAAATAGCAACTATAGTCTAATTGTCAACCCAAAATTCATGACAATCACTGGATTTGCACATCAAAATATCTTGAATCATGCTTAGACATGTTTCTTGAGCTAGTGGCGTGCGCAGTGGTGGGCCAATGTGAATGAAATAGCAGAGGAAAATGATTTTCCCAGTGCGGCCCTGCCTACAGTAGGAAGACTAAATACCAAAGACACAGTACAACAAACTACAGTATATAAAGGGTCTCAATTAATATGTAATCTCATGAGCTGGGCAAttgttaatatatatatttatgtgggTCCCCTGATCATTTGAGGAGACAGATCACTTAAACCTCAAATATGGAAAACCTTGACTTCACACAAAgcagctttttgttgttgttgctagccTATATTTCATAggatctttttttttgttgttgctagccTATATTTCATAggatctttttgttgttgttgctagccTATA

Function

NR:

description
GRAM domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986335.1 True 2903 mRNA 0.44 12 77710139 77728323

Neighbor

gene id symbol gene type direction distance location
LOC110530680 LOC106569513 coding upstream 11849 77559351 ~ 77763821 (+)
LOC110530679 LOC106569512 coding upstream 163123 77543520 ~ 77547016 (+)
LOC110530678 LOC106569511 coding upstream 168588 77478347 ~ 77541551 (+)
LOC110530677 LOC106569510 coding upstream 242902 77462803 ~ 77467237 (+)
LOC110530676 NA coding upstream 323302 77385581 ~ 77386837 (+)
LOC110530992 LOC106569517 coding downstream 14026 77742349 ~ 77811376 (+)
LOC118965560 NA coding downstream 83587 77811815 ~ 77815920 (+)
LOC110530993 LOC106569518 coding downstream 135267 77863590 ~ 77887401 (+)
LOC110530683 LOC106569519 coding downstream 166665 77894988 ~ 77919487 (+)
LOC110530684 LOC106569521 coding downstream 226394 77954717 ~ 77963861 (+)
G749390 NA non-coding upstream 74216 77634567 ~ 77635923 (+)
G749347 NA non-coding upstream 134992 77574003 ~ 77575147 (+)
G749338 NA non-coding upstream 158114 77551788 ~ 77552025 (+)
G749337 NA non-coding upstream 158498 77551334 ~ 77551641 (+)
G749482 NA non-coding downstream 106790 77835113 ~ 77838062 (+)
G749496 NA non-coding downstream 133303 77861626 ~ 77861843 (+)
G749506 NA non-coding downstream 161573 77889896 ~ 77890344 (+)
G749137 NA other upstream 327528 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 437479 77266652 ~ 77272660 (+)
G748917 NA other upstream 530011 77179344 ~ 77180128 (+)
G748905 NA other upstream 532790 77150663 ~ 77177349 (+)
G748432 NA other upstream 1002495 76706730 ~ 76708278 (+)
G749663 tcf3 other downstream 515887 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1068819 78797142 ~ 78797548 (+)
G750854 NA other downstream 1250907 78979230 ~ 78979981 (+)
G750935 NA other downstream 1466947 79195270 ~ 79197378 (+)

Expression


Co-expression Network