LOC110530992 (LOC106569517)


Basic Information

Item Value
gene id LOC110530992
gene name LOC106569517
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77742349 ~ 77811376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986337.1
CCTTCATGCATTGTGGGGTGCTTTGTCATTTTGAAACGTTCCCTGAATATTTCTGTCCCTGTGTTGGTggtgctaaatatgtgtatgcgaccaataacattcgATTTGACTTGATGTATTTTTGTATATTGGAGACATTCTGCGTTGGTATACTTCCTCAACATAGTGTTGGAATATATCCATTATAGCCTGAGCCTGTGCTAGCTGAGAGCTTGACCAGTATCTTTCTTCGGCTGTCAAGGGAGCACTGCATGCAAACCTGGAAAGACTGCACAGCTGGGgtccacagacagagagaatgaatTAAGACAGAATGAAAAGACTCGTGAGTATTTTGTCTGCACATATAGCCTAAGCCTTCTGGTCATTTGAAGGTGACGCTTACCCCTCTACACCGACTATAGCCCACTCTTGGATTTCATTGTGTGATTTGCAGGGGTGCAAAAAATATCCTTATCTTCAAACAAGGCACCGAAATGTAGCCTATAAAAAAAGCACTGCATCTGCGGGTACCATATTTCTCTTTTACCCGGGAAAGGTTTATTGGAAAGGTTTGACCTGGTCTGGACGCGTTCACTGGAAGATAACGGGGATGCCACGGTTACGCGCAGAAGCCGCTCGAGGAAGAGACAGGTGCGGCAGAGGGGATTGGTAGTTTAATAGCCGATTCTCATCCAGGCATTGTGATTACCAAGACCCAGAGAGAGCTTGGTGCCCTGCTCCACcctttgtgttgatttcagacgTGGAGGAAAACCCGTCTGCGTACGAGAGGACGACTGGCAACAAACCAGACATCGCCTGCTTACCTGTCCATCTCGCACAGTGAATGTGCCCGTGCTGTGCTGCCATGACAACCATGGCCCCTCCCTTCAtgtttctcctccttctcctccgattgGCTCACAGTTCTTTCCCAGAGGAGCCCGGTCCGCTCAGCTACGCTCCCTTAGAGGTGGTGAGGAGGtatcctgtgtttgtgggtagagcTCATCATTCCTCTCAGAGACAGGACCTGCACATTCAGACAGTGCTCCAGGTCAACCGCACTCTCTACATAGGAGCCAGAGACGATCTATACAGAGTGGAGCTGGACAATATGTCAGGGGATGAAATGTTCTACAGcaagAAGCGGACGTGGGAATCCAATAAGAATGACATTCGAGTCTGCAGAATGAAGGGCAAACATGAGGAGGAGTGTCGTAACTTCATTAAGGTGGTGTTGAGTCAACATGAAGGACTGTTTGTGTGTGGAACCAATGCCTTCAACCCTTTGTGTGCCAACTACACTagagacTCTTTGGAGATGGTGGGAGAGACGGTCAGTGGGATGGCTCGTTGCCCGTATGACCCCAGACACGCCAACGTGGCTCTGTTCGCAGaGGGCAGTCTCTTCACTGGTACTGTAACAGACTTCCTGGCGATTGATGCTGTGATCTATCGTAGCCTAGGCGACAGCCCCGCTCTTCGCACTGTCAAACACGACTCCAAATGGTTCAGAGAACCCTTCTTTGTGAGTGCAGTTGAGTGGGGGCCTCACGTCTACTTCTTCTTCAGAGAAATGGCCATGGAGTTTCATCACCTAGAGaaggtgatgGTATCTCGTGTGGCGCGGGTGTGCAAAGGGGACATGGGGGGCTCTCAGAGGGTGTTGGAGAAACAGTGGACATCGTTCCTGAAGGCCAGACTGAACTGTTCTGTCCCAGGAGACTCCCACTTCTATTTCAACCTGCTCCACGCCACCAGCCCCATACTCAACATGAACGGCAGAGACGTCATACTGGGACTGTTCTCGACACCAcccaacagtatcccAGGGTCTGCAGTCTGTGTGTTTGACATGCAGCAGTTAGCCAGGGTGTTTGAGGGAAGATTCAAGGAGCAGAAATCTCCAGAATCCATCTGGACACCCGTGCCTGATGAGCTTGTGCCCAAACCCAGgccGGGTGGCTGTGCGGTGCAGGGGTCTCCTTTCAGCTCATCTAAGTCTCTGCCGGATGAAGTGCTGAACTTTGTAAAGACTCATCCCTTGATGGACGAGACCATACCCTTGGTTGGGCACAGACCTTGGGTTGTCAAGACTATGGGCAGGTACCAGTTGACCGCAATGGTGGTGGACACAGAGGCTGGTCCCCATAGGAACCATACAGTGTTGTTCCTGGGCTCCACGCGAGGGACCGTCCTGAAATTCCTCATCCTCCCCAGCGGAGAAAACTCTCCCACACACAGCAGTGTGTttctggaggaggtggagggattcAACCCTGAGAAatgTGGAGAGGACTCGGTCCAGGCCAGACAGTTGTTGTTTCTGTCTCTGGATCGTCCAAGTCACACTCTGCTGCTGGCCTTCACTTCCTGTCTGGTCAGACTGCCCACAGCACGCTGCCACCTACACTCACGCTGTATGAAgagcTGTCTGACCTCCCGAGATCCCTACTGTGGCTGGACCAGAGGCAGCACCTGCTCCTTCCTCAGACCAGGCACACGgcttccttttcaacAAGACAGTGAGTACGGCAACTTCTCCCATCTTGGAGACTGTGATGGTGCCATACAGCAGAGTCTGCTGATCGAGCCGGAGAGCCTGGTCTCCCTCAACCTGCTGGTGGCATCTGCAGTCTCAGCCTTCACCATCGGTGCGGCGCTCTCGGGGCTGGCTGTCTGCTGGATTATGGCCCACAAGCCTGGCAACCGTCGCCACGGCAACAATACCCCCCAGTCCACTATCCAGCGCCAGGAGAGGGGGATGTTGACGtcaggaggagggatggggggatcGGTCCTCAGTGTGACCCGTCAGGGAGGAGGCGATAGACCCTGCTCTCAGGGCGGGGAGACCCTGTTTGTGATGCCCAACGGCTGGGGGAAGTCAGGGGAGCTGGACCCAGGGTTCCTGCCTACTCCGGAGCACACGCCCCAGCAGAAAAGACGCGGGCTCAGGCTGTCTGATTCTGGATCAGGGGGGTGGGATAACAGCCAGACCTACCTGGGAGGGAGTACCATGGGGCTGGCGTCTCCCTGCCCTCTCCCTTGCCCCCCACACCCCTCCACCGCTGTCtacctgaccaccagactatttcaggggggaggaggagggaggcacGGGGGTGAGGagcgaggaagaggaggggagactCCTCGCCAGCACTACGTGTGCCTGAGCAAGCCCCGGGGGGAGAAGGGCAGAAGTGGGACACCGAAGTCGGCGCTTCGTAAGTCGGCAGGGGAGTACGTGTACCCCATGACCCCCCAGGATTCTCCGGATAGGAGGAGGGTGGTGTCAGCCCCCAGCGCCCCTATGGAGTTTGGGGAGCCCCTGCCACTCCGCTGGCCTCCCCAGGAAGGCTACATCCTCAGCAGCCAGGGCATGGTCCCTGTACCTCCATCCTCCATGCCCACCATCAAAGGCCAGCAGTACGTGGCCCAGCACCACACACCTGGGCCGGGCAGGTCTCAGCTGAGAGGGGCCTTGGGGAGAGGAGAGCTGGGGGAGCTGGTGGATCTCAGCCAGCTGCTGAGTAAGAAGAGTTCCAATGAGAGGACTCACAACGGGCAGTGATCAAGCAGGGAAACCATGTCTCTTTCTATATcgttctctttctgtctgttctacattttctctcactctctctttctctctgacctcTTTCTCTGTCATTGTCATTTAGTCCTCCGGATATCTCTGTATCTCGCTGGCGGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTAGGAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCACTGGCAGACTCCTGAGGCTGTTCTCTCTGTGACTGGTTGATGCTGCTATCACTCATACCCTGCTTGGCTGTGATTGGTCAGTGGAAGTGAGGTTGTTGCTGTGTCTGCATTGCAGAGCTGCCTCTCCCCTCTGGCTgcttagagaggggagagaggaggagagagagatagcgggATTGAAAGAggtgagaaagagggatggagatggaaagagaaaaggGAAGGAAGAGTTTGCTAGACAGCAGAATTCTTCCAAAAGAACACATTAAGAGAGAACCATAAATAGGAAGGAACATGCAAAGAGACCCAGAGACAGACACTTCCCTGTGCAACAAACAGGGCAACAAGGACTGACCGAACAACATGGCCACAGAGCCCACTGTCAGGTGTCAGAAGACGAGACCCAGTGGACATCACTCCTACACAGTGTACTTTGTCCACCTTCCAGTGCAGACTGATTGGCACTCTCTGACAATAAGACAATGGAGGACACTGAAACATGAATTGTAAACACATTACTTTGAAGCATCTTGCTGCAGGTGAATGAAGCAGACACCCCCCTGGGCTCACACGTCAGATCATCATCTACTTTTGATTTACACTTGATTTACAACTCAACCAAAACTGTGATTTGGTTCATAATAACGTGAATTTAATGTGAAATCAACGAGAAAATGTCACCAggtcattggatttaggtgaaCAGTTGGGTGAAAACAAGACCAAATGCCCCtacgttgattcaatgtcatcacatagatttctggtgttgaaatgacgtggaaacaatgttgattcaaacagtttttgcaGAGTGGGACTGTTCTCTCTCAGTAACACTGAGGTCattctgactctgactctgaatGTCACGAGAATATCTGATGAAGAGTGTCGAAAGGAAGCGGCAATGAAGATTTAATAGCCTGCCCTCCAGCTgcctccccaacacacacacacacacaggtcagtttTAATAAACCCACCCTGCGGGGGACCAGTCCTTGGTATCGTGGTGAGGGGGACATTGATTCCCAGTGTATGTGAGTCGAGAGGGGGTGTATAGTACCGCTCCTAACCTGTCTCACTGGG

Function

NR:

description
PREDICTED: semaphorin-6B-like isoform X3

GO: NA

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986337.1 True 4969 mRNA 0.53 17 77742349 77811376

Neighbor

gene id symbol gene type direction distance location
LOC110530682 LOC106569515 coding upstream 14026 77710139 ~ 77728323 (+)
LOC110530680 LOC106569513 coding upstream 44059 77559351 ~ 77763821 (+)
LOC110530679 LOC106569512 coding upstream 195333 77543520 ~ 77547016 (+)
LOC110530678 LOC106569511 coding upstream 200798 77478347 ~ 77541551 (+)
LOC110530677 LOC106569510 coding upstream 275112 77462803 ~ 77467237 (+)
LOC118965560 NA coding downstream 534 77811815 ~ 77815920 (+)
LOC110530993 LOC106569518 coding downstream 52214 77863590 ~ 77887401 (+)
LOC110530683 LOC106569519 coding downstream 83612 77894988 ~ 77919487 (+)
LOC110530684 LOC106569521 coding downstream 143341 77954717 ~ 77963861 (+)
LOC110530687 LOC106569523 coding downstream 162298 77973674 ~ 77977792 (+)
G749390 NA non-coding upstream 106426 77634567 ~ 77635923 (+)
G749347 NA non-coding upstream 167202 77574003 ~ 77575147 (+)
G749338 NA non-coding upstream 190324 77551788 ~ 77552025 (+)
G749337 NA non-coding upstream 190708 77551334 ~ 77551641 (+)
G749482 NA non-coding downstream 23737 77835113 ~ 77838062 (+)
G749496 NA non-coding downstream 50250 77861626 ~ 77861843 (+)
G749506 NA non-coding downstream 78520 77889896 ~ 77890344 (+)
G749137 NA other upstream 359738 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 469689 77266652 ~ 77272660 (+)
G748917 NA other upstream 562221 77179344 ~ 77180128 (+)
G748905 NA other upstream 565000 77150663 ~ 77177349 (+)
G748432 NA other upstream 1034705 76706730 ~ 76708278 (+)
G749663 tcf3 other downstream 432834 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 985766 78797142 ~ 78797548 (+)
G750854 NA other downstream 1167854 78979230 ~ 78979981 (+)
G750935 NA other downstream 1383894 79195270 ~ 79197378 (+)

Expression


Co-expression Network