LOC118965560


Basic Information

Item Value
gene id LOC118965560
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77811815 ~ 77815920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052959.1
CCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACCGCTCTTAACCTGTCTCACTGGGACCAAGGGACTATAACTCACCCTCACTGGGCCGGACTGGAATGTCAGCACTATTTCTGCCAGCCAGGCATTCTCTCTAATGACATGGCAccatttcatccctccatccgtcCATTCCTTCACTTCATCACTCTATCCTTCCACTCCATGTACTTTTTAATGGCCAGTCATTTCAGAGCTGACGCAATGTGTTAGGAGCAGTACTGTACGACCCAGTGAGATAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCTAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGTCAGGTTAGGAGAAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACAGTACGACCCCGTGAGACAGGTTAAGAGCGGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGAcccagtgagacaggttagtAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACACCCCCTCTCGACTCACATACACTGGGAATCAATGTCCCCCTCACCACGATACCAAGGACTGGTCCACCGCAGGGTGGGTTTATTAaaactgacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcagaTGCACTGGCTATGCGTGTGATTGATAATCACTATGGTTGTGATTGAAACGACTGTCCTGACTCTTACTCATCCATGTTAATGGACATTTTCCCAGAGCTCAAACGGGACCATACATTCTATCCGTCAAAGTGTCTAATGAGAAACTTTCCATTACTTTAAGTGATCATGGAAAGAGGGatagatagaaagacagagggaaaagACGAAAGGCAGGAGGaccgagagagaaacagaaaggcagagtgagaaagagagagacaacactgagACAAGGAAGAAGATGTGATCTGTCATTCCCAAGTCATCAGAGCCACAGCTCCAGTCACATCCAGAAGGAAAATTAGTTCAGCTCTGTTGTGAACCTGAGCAGTAATGACTTGTATATAAAGACCCAACCCCAGTCAGATGTCTGTGTTACCGTTGAAGGAGCACAATGATGACGTCACACATGGGGTGTTGTTTCAAGACCGAGTCACAGTTACAAGACACTCATAATCACACCATGCCGATGACTTTTCGCCCTTTGTTGTCAATACAAAATTATGTGCCAACATTCTAAACTGTACTTTTGGGTGACATACGGACCACAGAAGCAAAAAGGAAACATATTTTCAAGTGCCATAAAAACCATGTCAGTACATTTGATTCTTTATACATTTGATACTGTGATGTTGTATAATTTGTTCAAATGTGTACAGTTCCTGTGTACAATGAGGAACTTCACAATGTTGCCTTCAGATAGCATACTGAACATTGATTTTCTTTCATAACTATTTTGACTTTGCTGCTCTTATCCATTTGATAAAGTTGATGCCACTGACAGTCTGTTTATAAACCACTTATAAACAGTAGTACATCATTTAGGtcagtttttcctgaaatacTCTAGCAAAGTATTGATTGTTTTTCTCCACACCAACAAACTGTCATACTGAGGAACCTTAAAGTCCAAGGCTACTTCCTGTTCATAATACTGTGCAGTAATACATCATGGAAAAGCACAATAACTTTTATTTTTCTTATTTGAAAAGTAGTTGTACTGTAACGTTATCTATGTATATTTGTGTAAATAATCTATTTGAAGGTATCTTATCCATGTGGTTTTaaggttgttgttttttcatCCTTGACACAGGCCTTTGACGTGTTGGTTTTGGTTGACTGTGATATGAATGAGATGTAACAGAgcaggctggtgggaggagctataggagaatggGCTCTTTATAGTGGCTGGAATGGAACGGTGTCTgacccaccagccaccactgagATGCAAGTACAGGAATTACAGTATTTACCTTTGACTGAAAGCTGAGGGTAGCTGTTTTCTTTCTAAAAAGAGTAGAATCGTAGGCTTGTCCTGCTGAGCTGAATGAAAAAGGTCTCCATATTATTTGATTTATGATTTACggctgtacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacattaaacactTAATGTGAGAGGATACAGCAGTCAGTTAATATGGACAACCCTGTCAATATATTCTTTATTATTCTAATAAACAATGAATATGTATTAA
>TU850826
TGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACCGCTCTTAACCTGTCTCACTGGGTCATACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACCGCTCTTAACCTGTCTCACTGGGACCAAGGGACTATAACTCACCCTCACTGGGCCGGACTGGAATGTCAGCACTATTTCTGCCAGCCAGGCATTCTCTCTAATGACATGGCAccatttcatccctccatccgtcCATTCCTTCACTTCATCACTCTATCCTTCCACTCCATGTACTTTTTAATGGCCAGTCATTTCAGAGCTGACGCAATGTGTTGAGAGAAGGGTAGAGCATTGGGTGAGTTCAGTACTGTTTGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGATAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGT
>TU850827
TGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACCGCTCTTAACCTGTCTCACTGGGTCATACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACCGCTCTTAACCTGTCTCACTGGGACCAAGGGACTATAACTCACCCTCACTGGGCCGGACTGGAATGTCAGCACTATTTCTGCCAGCCAGGCATTCTCTCTAATGACATGGCAccatttcatccctccatccgtcCATTCCTTCACTTCATCACTCTATCCTTCCACTCCATGTACTTTTTAATGGCCAGTCATTTCAGAGCTGACGCAATGTGTTGAGAGAAGGGTAGAGCATTGGGTGAGTTCAGTACTGTTTGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGATAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGAcccagtgagacaggttagtAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACACCCCCTCTCGACTCACATA
>TU850828
TGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACCGCTCTTAACCTGTCTCACTGGGTCATACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACCGCTCTTAACCTGTCTCACTGGGACCAAGGGACTATAACTCACCCTCACTGGGCCGGACTGGAATGTCAGCACTATTTCTGCCAGCCAGGCATTCTCTCTAATGACATGGCAccatttcatccctccatccgtcCATTCCTTCACTTCATCACTCTATCCTTCCACTCCATGTACTTTTTAATGGCCAGTCATTTCAGAGCTGACGCAATGTGTTGAGAGAAGGGTAGAGCATTGGGTGAGTTCAGTACTGTTTGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGATAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACACCCCCTCTCGACTCACATA
>TU850829
CCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGTCAGGTTAGGAGAAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACAGTACGACCCCGTGAGACAGGTTAAGAGCGGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACACCCCCTCTCGACTCACATA

Function

NR:

description
uncharacterized protein LOC110016724

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052959.1 False 3954 mRNA 0.46 2 77811910 77815920
TU850826 False 859 lncRNA 0.51 2 77811815 77812707
TU850827 False 1100 lncRNA 0.51 4 77811815 77814091
TU850828 False 828 lncRNA 0.50 4 77811815 77814091
TU850829 True 1093 lncRNA 0.52 3 77812863 77814091

Neighbor

gene id symbol gene type direction distance location
LOC110530992 LOC106569517 coding upstream 534 77742349 ~ 77811376 (+)
LOC110530682 LOC106569515 coding upstream 83587 77710139 ~ 77728323 (+)
LOC110530680 LOC106569513 coding upstream 113620 77559351 ~ 77763821 (+)
LOC110530679 LOC106569512 coding upstream 264894 77543520 ~ 77547016 (+)
LOC110530678 LOC106569511 coding upstream 270359 77478347 ~ 77541551 (+)
LOC110530993 LOC106569518 coding downstream 47670 77863590 ~ 77887401 (+)
LOC110530683 LOC106569519 coding downstream 79068 77894988 ~ 77919487 (+)
LOC110530684 LOC106569521 coding downstream 138797 77954717 ~ 77963861 (+)
LOC110530687 LOC106569523 coding downstream 157754 77973674 ~ 77977792 (+)
LOC110530688 LOC106569524 coding downstream 222174 78038094 ~ 78046774 (+)
G749390 NA non-coding upstream 175987 77634567 ~ 77635923 (+)
G749347 NA non-coding upstream 236763 77574003 ~ 77575147 (+)
G749338 NA non-coding upstream 259885 77551788 ~ 77552025 (+)
G749337 NA non-coding upstream 260269 77551334 ~ 77551641 (+)
G749482 NA non-coding downstream 19193 77835113 ~ 77838062 (+)
G749496 NA non-coding downstream 45706 77861626 ~ 77861843 (+)
G749506 NA non-coding downstream 73976 77889896 ~ 77890344 (+)
G749507 LOC107756720 non-coding downstream 74605 77890525 ~ 77891103 (+)
G749137 NA other upstream 429299 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 539250 77266652 ~ 77272660 (+)
G748917 NA other upstream 631782 77179344 ~ 77180128 (+)
G748905 NA other upstream 634561 77150663 ~ 77177349 (+)
G748432 NA other upstream 1104266 76706730 ~ 76708278 (+)
G749663 tcf3 other downstream 428290 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 981222 78797142 ~ 78797548 (+)
G750854 NA other downstream 1163310 78979230 ~ 78979981 (+)
G750935 NA other downstream 1379350 79195270 ~ 79197378 (+)

Expression


Co-expression Network