LOC110530684 (LOC106569521)


Basic Information

Item Value
gene id LOC110530684
gene name LOC106569521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77954717 ~ 77963861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986342.1
CATAATAtacaaaatgggtgatggacatccacaaattaatacataccatatgaaatgtaacatattatactaaAAGGAATTGCTCGGAATatatgtacagaataatacgaaatgttcAGAGACCAGGTTGCTCAATCAGGGAGAATAATCTGGCATGCTGACGAAGCCATAGCAGCAGCGGTATCTATTCAGGTCCTTCACCGCGGGATCTGAGCGCCTTAACTTTTCCCAACAATATATCCGACAACAACAGTCCCTTTCAACGGATCCGACAGAGACAGAAGGGGGAACAAGGACAGCCGTTTAGCCACTGCCTCTTTGTGGAAAGCGCTTGGCTGTGGGTTTGTACTGTGTTTGAACCAAAGAGCAACCAGACCTGGGCAGTCTCTTGTACACACTCGAGAAAGAACACCTATCACCTTTAAAGgtccgTGCCATCCATCTTACCATGGACTCCCTGCTGACAGAGGCCTGTAGAGAGATCAGAAGCCTGTGCTGGAGACTGGCTCAATCACACAGCCATCTATCCTCTGAACACAAAGTAGGCCTAACACGTAGCCTGGGTCTATGAGTGCCTCCTGCCTTCTCTCTACCGGACTGGATTTAACACAAACTGGACTGGATTTAACACAGACTGGACTGGATTTCCTTTTAAGAGCCATTTAAGGAACTAAATTAAATTTTGACAAGGAATAAGCCATGTATCCTCTAGTGGTCGTAAGTTTCTTTTggctcctccctctcgctctgacGCTGGACGCCCATTCGCCACTGGACTGCGTTCCACGTAAAACTGTACCCTATCATAGAGAGAATGGTCGTATGTTCGGTGAAGAGGGTGTGTGGAACTACTCCACCATGCTGCTGAGAGAGGACCTGGGTCTGTTGCTGCTGGGAGCCAGGGAGAACATCTACGCCCTGGACATCAACAACATCTCCAACAAGAAGTCCTCCGTAAGTTGGAAAGTGACAGAGAAGCAGCAGAAGGAGTGCAGCTCCAAGGGGAAAAATCAGATAGAGTGTCAGAATTACATCAGGGTCCTGCATACAATGGAGGATGGTAGGATGTATGTGTGTGGGACCAAGGCCTTCAACCCAGAGTGTGACTACATGTCGTACAAAGACGGAGAGTTGACTCTGGAAAACAAGGCAGAGGATGGCAAAGGGAAGTGTCCCTTCGATCCATTCCAGAGATTCTCTTCCATCATGATCGACAAAACCCTCTATTCAGCCACATCAATGAACTTCCTGGGTTCTGAGCCTGTGGTGATGCGcagctctccctcctccatacGCACTGAGTTCAAGAGCTCCTGGCTACACGAGCCCAACTTCATCTCCATGGCCCAGATGCCAGAGAGTAGGAACAGCTTAACGGGTGACGATGACAAGGTCTACCTGTTCTTCACTGAGACCGCTGTGGAGTACGACTTCTACAGCAAACTGGTGGTGTCCCGCGTAGCACGTGTCTGCAAGgGGGACCTTGGGGGCCAGAGGACCCTGCAGAAGAAGTGGACGTCGTTTCTAAAGGCCCGTGTGGACTGTCCTGTTCTGGAATCCCAGCTACCCTACATCATACAGGACACCTACCGCTGGTGTGAGGAGGGAGACTGGAGAAGCTGTGTGTTCTATGCTGTATTCACATCACAGTCGGACAGGGTGGAcctctctgcagtgtgtgcaTACAGGGTGTTGGACATCGGCAGGGTGTTCTCCGAGGGGAAGTACAAGACCCCGGTAACCGTGGAAACGTCCTTTGTGAAGTGGGTGATGTACAGTGGTGCCGTGCCCTCCCCCAGACCTGGAGCTTGTATAGATGACGAGGCTCGTAACCAGGGAATCAGTCAAACTCTGGACCTGCCAGACCGGACCCTGCAGTTCATTAGAGACCGGCCCCTCATGGACCAGGCTGTTCTGCCCATGGGAGAGCGCCCCTTGCTGGTCAGGAGAGGCACTGCCTTCACACGCATCATAGTACACAGAACACAGGCCCTGGACGGGAAGAAATACCATGTCATGTTCATAGGCACAGAGGTTGGCAGCGTGTTGAAAGCGCTTAACTACGATAAGGAGATGTTCATCATCGAGGAAGTGCAGCTCTTCCAGCCCCGTGAGCCAATCAAAGTCCTCCGTTTCTCCAACACAACGggtcagCTGTACGCAGGCTCTGAGTACGGTGCTGTTCAGATGCCGTTTAGTAGCTGTGGTCGTTCTCGCACCTGTGTGGACTGTGTCCTGGCCAGAGACCCTTACTGTGTCTGGGACAGAACTACAGCCCAGTGTATCTCCCTGTCTACAGCTAACACAGACAGTGAACTGATCCAAAGTTTATGGGTTGGagacttttctctctgccccacctcagACCCTGTGAAGACTGTTAATCAGACCATGTGGCTGGGTGGCAATGTGAAGCTCCAGTGCCCCCCCACTTCCAACCTGGCAGAGACCCACTGGGTGAAAGACTCCCTGCCCCTGCCCTCCTCGCATCGCAACCAGATCCTCCGAGACAGCCTCCTTATCCTCAACGCCTCTGCCTCTGACACTGGCCGCTACCGCTGTCTGTCCTTGGAGCGTTCCCACAGCGGGAAGTACACCACCACCGTGGCTGAGTACCAGCTTAGAGTAGGTCTAGAAGGGCTCTCACTCAGACCTGAAGCCAGGACCGAGGGCCCTTCCCTGGCAGTGCTGCAGGTGTCAGTGGCCTTCCTAGCGATTCTGCTGGCTGTCCTGCTGGGGTGGAACCTGTACAAGGGACACCTGCCCCTGCCTGGGCCCTGTGGGAGAGTGATAGGAGCAGGGAGAGGGCAGAACCAAGGTGCCCCAGAGGAGGGGGCTGCTCACATTGCCGTGGCCCACCTAGAGGTCTCAGAGCCTGGGGAGGCGGAGAGCAAGGCCCTGGTGTCTGGAGAAGGAAACTGCACCAGTAATAACAACCACTCTACTGGGGAGGTGGCATTaggaggggatgaggagggggagggggaagccAGAGTTACTTTCCCCTCATTGCAGTTCATTGATGATGAATCAGAGATATGACTGAACAGTATGCAGCAGATAAACTGTGACTAGATCGGACCAACACAcctgtaatgttttgtacaaagCGGTTGGAAGAGAACTGTATTGTTTGTGAAACTATGGTTGCGTTCTGCTGACGTGACATCATTGactgtgtcatcgactgacagattgctataacatatatGGTTAGCTGATATGTTAAATACCTATCCGagcgttgtaagatctggcaggcGTCAGCAACGCCTGAGCAGAGGAACACACCCTATGATTCTGTTACCAGCCAATCAGACCCAGCTTTTCCTGCTCTAGTGCTGGATTGGTCAAGTTGAACTGTGGTGGTGGGGACTGGTTATCAAACTTGTTTTAGATTTACGAGCACCTAAAGCGTTAGAAACTTGTGTGACCCACTCAAatgaacaaccatctctgccggGTATCCAGGACCCACCTCTAACAAGCACTGAGAGAGAACTACAAGGATAGGTAGGAATTCTCCTAATTAAATGAATAGGATTGATATGACAATGTTTTACTCTTATTTTTCTCTTCCACTTTACTCCAGAATGTTTTGTTATGTGGTCCCTCTCTCTCGTGCCATTTCTAACCTGTCGAAGTACGTGCCTTCTCAGGATCCTGTTAACTGTATCGTGTCAGTGTTGTCTTTATTAAAACTCTTTCTACTTT
>XM_036986343.1
TGTGACTAATCTGCTACACAACCAGCACTCTGACTAATGACACTCCTGGACACACCCACCATAGTGGGGAAATCCGATCCTCAAAAGGATTGACTTGCAACATTGCAACATTTACAGAACAAGATTGTACAACTGCCAATGTTCTTGTGATGGTAGACCTGGgtccgTGCCATCCATCTTACCATGGACTCCCTGCTGACAGAGGCCTGTAGAGAGATCAGAAGCCTGTGCTGGAGACTGGCTCAATCACACAGCCATCTATCCTCTGAACACAAAGTAGGCCTAACACGTAGCCTGGGTCTATGAGTGCCTCCTGCCTTCTCTCTACCGGACTGGATTTAACACAAACTGGACTGGATTTAACACAGACTGGACTGGATTTCCTTTTAAGAGCCATTTAAGGAACTAAATTAAATTTTGACAAGGAATAAGCCATGTATCCTCTAGTGGTCGTAAGTTTCTTTTggctcctccctctcgctctgacGCTGGACGCCCATTCGCCACTGGACTGCGTTCCACGTAAAACTGTACCCTATCATAGAGAGAATGGTCGTATGTTCGGTGAAGAGGGTGTGTGGAACTACTCCACCATGCTGCTGAGAGAGGACCTGGGTCTGTTGCTGCTGGGAGCCAGGGAGAACATCTACGCCCTGGACATCAACAACATCTCCAACAAGAAGTCCTCCGTAAGTTGGAAAGTGACAGAGAAGCAGCAGAAGGAGTGCAGCTCCAAGGGGAAAAATCAGATAGAGTGTCAGAATTACATCAGGGTCCTGCATACAATGGAGGATGGTAGGATGTATGTGTGTGGGACCAAGGCCTTCAACCCAGAGTGTGACTACATGTCGTACAAAGACGGAGAGTTGACTCTGGAAAACAAGGCAGAGGATGGCAAAGGGAAGTGTCCCTTCGATCCATTCCAGAGATTCTCTTCCATCATGATCGACAAAACCCTCTATTCAGCCACATCAATGAACTTCCTGGGTTCTGAGCCTGTGGTGATGCGcagctctccctcctccatacGCACTGAGTTCAAGAGCTCCTGGCTACACGAGCCCAACTTCATCTCCATGGCCCAGATGCCAGAGAGTAGGAACAGCTTAACGGGTGACGATGACAAGGTCTACCTGTTCTTCACTGAGACCGCTGTGGAGTACGACTTCTACAGCAAACTGGTGGTGTCCCGCGTAGCACGTGTCTGCAAGgGGGACCTTGGGGGCCAGAGGACCCTGCAGAAGAAGTGGACGTCGTTTCTAAAGGCCCGTGTGGACTGTCCTGTTCTGGAATCCCAGCTACCCTACATCATACAGGACACCTACCGCTGGTGTGAGGAGGGAGACTGGAGAAGCTGTGTGTTCTATGCTGTATTCACATCACAGTCGGACAGGGTGGAcctctctgcagtgtgtgcaTACAGGGTGTTGGACATCGGCAGGGTGTTCTCCGAGGGGAAGTACAAGACCCCGGTAACCGTGGAAACGTCCTTTGTGAAGTGGGTGATGTACAGTGGTGCCGTGCCCTCCCCCAGACCTGGAGCTTGTATAGATGACGAGGCTCGTAACCAGGGAATCAGTCAAACTCTGGACCTGCCAGACCGGACCCTGCAGTTCATTAGAGACCGGCCCCTCATGGACCAGGCTGTTCTGCCCATGGGAGAGCGCCCCTTGCTGGTCAGGAGAGGCACTGCCTTCACACGCATCATAGTACACAGAACACAGGCCCTGGACGGGAAGAAATACCATGTCATGTTCATAGGCACAGAGGTTGGCAGCGTGTTGAAAGCGCTTAACTACGATAAGGAGATGTTCATCATCGAGGAAGTGCAGCTCTTCCAGCCCCGTGAGCCAATCAAAGTCCTCCGTTTCTCCAACACAACGggtcagCTGTACGCAGGCTCTGAGTACGGTGCTGTTCAGATGCCGTTTAGTAGCTGTGGTCGTTCTCGCACCTGTGTGGACTGTGTCCTGGCCAGAGACCCTTACTGTGTCTGGGACAGAACTACAGCCCAGTGTATCTCCCTGTCTACAGCTAACACAGACAGTGAACTGATCCAAAGTTTATGGGTTGGagacttttctctctgccccacctcagACCCTGTGAAGACTGTTAATCAGACCATGTGGCTGGGTGGCAATGTGAAGCTCCAGTGCCCCCCCACTTCCAACCTGGCAGAGACCCACTGGGTGAAAGACTCCCTGCCCCTGCCCTCCTCGCATCGCAACCAGATCCTCCGAGACAGCCTCCTTATCCTCAACGCCTCTGCCTCTGACACTGGCCGCTACCGCTGTCTGTCCTTGGAGCGTTCCCACAGCGGGAAGTACACCACCACCGTGGCTGAGTACCAGCTTAGAGTAGGTCTAGAAGGGCTCTCACTCAGACCTGAAGCCAGGACCGAGGGCCCTTCCCTGGCAGTGCTGCAGGTGTCAGTGGCCTTCCTAGCGATTCTGCTGGCTGTCCTGCTGGGGTGGAACCTGTACAAGGGACACCTGCCCCTGCCTGGGCCCTGTGGGAGAGTGATAGGAGCAGGGAGAGGGCAGAACCAAGGTGCCCCAGAGGAGGGGGCTGCTCACATTGCCGTGGCCCACCTAGAGGTCTCAGAGCCTGGGGAGGCGGAGAGCAAGGCCCTGGTGTCTGGAGAAGGAAACTGCACCAGTAATAACAACCACTCTACTGGGGAGGTGGCATTaggaggggatgaggagggggagggggaagccAGAGTTACTTTCCCCTCATTGCAGTTCATTGATGATGAATCAGAGATATGATCTTACCGCCAATGGTATttcagtttgctttattttttgaCTGTATGCAGTCAGTATTCAACGGGACTGAACAGTATGCAGCAGATAAACTGTGACTAGATCGGACCAACACAcctgtaatgttttgtacaaagCGGTTGGAAGAGAACTGTATTGTTTGTGAAACTATGGTTGCGTTCTGCTGACGTGACATCATTGactgtgtcatcgactgacagattgctataacatatatGGTTAGCTGATATGTTAAATACCTATCCGagcgttgtaagatctggcaggcGTCAGCAACGCCTGAGCAGAGGAACACACCCTATGATTCTGTTACCAGCCAATCAGACCCAGCTTTTCCTGCTCTAGTGCTGGATTGGTCAAGTTGAACTGTGGTGGTGGGGACTGGTTATCAAACTTGTTTTAGATTTACGAGCACCTAAAGCGTTAGAAACTTGTGTGACCCACTCAAatgaacaaccatctctgccggGTATCCAGGACCCACCTCTAACAAGCACTGAGAGAGAACTACAAGGATAGGTAGGAATTCTCCTAATTAAATGAATAGGATTGATATGACAATGTTTTACTCTTATTTTTCTCTTCCACTTTACTCCAGAATGTTTTGTTATGTGGTCCCTCTCTCTCGTGCCATTTCTAACCTGTCGAAGTACGTGCCTTCTCAGGATCCTGTTAACTGTATCGTGTCAGTGTTGTCTTTATTAAAACTCTTTCTACTTT

Function

NR:

description
semaphorin-4E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986342.1 False 3714 mRNA 0.51 16 77954717 77963861
XM_036986343.1 True 3515 mRNA 0.51 15 77955858 77963861

Neighbor

gene id symbol gene type direction distance location
LOC110530683 LOC106569519 coding upstream 35230 77894988 ~ 77919487 (+)
LOC110530993 LOC106569518 coding upstream 70326 77863590 ~ 77887401 (+)
LOC118965560 NA coding upstream 138797 77811815 ~ 77815920 (+)
LOC110530992 LOC106569517 coding upstream 143341 77742349 ~ 77811376 (+)
LOC110530682 LOC106569515 coding upstream 226394 77710139 ~ 77728323 (+)
LOC110530687 LOC106569523 coding downstream 9813 77973674 ~ 77977792 (+)
LOC110530688 LOC106569524 coding downstream 74233 78038094 ~ 78046774 (+)
LOC110530995 LOC106569526 coding downstream 108698 78072559 ~ 78188049 (+)
onecut3b onecut3 coding downstream 372040 78335901 ~ 78361471 (+)
LOC110530701 LOC106569539 coding downstream 628437 78592298 ~ 78597767 (+)
G749536 NA non-coding upstream 736 77953768 ~ 77953981 (+)
G749535 NA non-coding upstream 2109 77952395 ~ 77952608 (+)
G749531 NA non-coding upstream 6097 77948322 ~ 77948620 (+)
G749529 NA non-coding upstream 9228 77945063 ~ 77945489 (+)
G749528 NA non-coding upstream 9963 77944504 ~ 77944754 (+)
G749547 NA non-coding downstream 34872 77998733 ~ 77998953 (+)
G749557 NA non-coding downstream 57482 78021343 ~ 78021813 (+)
G749585 NA non-coding downstream 225987 78189848 ~ 78191947 (+)
G749588 NA non-coding downstream 229808 78193669 ~ 78200686 (+)
G749654 NA non-coding downstream 260693 78224554 ~ 78224777 (+)
G749137 NA other upstream 572106 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 682057 77266652 ~ 77272660 (+)
G748917 NA other upstream 774589 77179344 ~ 77180128 (+)
G748905 NA other upstream 777368 77150663 ~ 77177349 (+)
G749663 tcf3 other downstream 280349 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 833281 78797142 ~ 78797548 (+)
G750854 NA other downstream 1015369 78979230 ~ 78979981 (+)
G750935 NA other downstream 1231409 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 1381576 79210727 ~ 79347454 (+)

Expression


Co-expression Network