LOC110530688 (LOC106569524)


Basic Information

Item Value
gene id LOC110530688
gene name LOC106569524
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78038094 ~ 78046774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613929.2
acaGCCAATGTTTGCTTTAGCCACCTAGCATTAGCGACGACAAATTAGAGTTCATAACATATCAAACGTTTCGGGAAATTCCAAACATATTGTACAAATcttaattcgtaacatatcatgcgAAATCGATTAATACATATCATACGAAACATAACATATTCACAATAATGGTAAGATTTTTCCAGATTttaatttactatgttacgtcttcCCCTGAGTCCACATTGCAGCCGAACGTGAAGTGATATAAAGCAGCGTAAGGTGTCATAAGCGTTCTCTTTCCTGCCTATCCTTGGACGAGGAAGGCGGTGTATTCGCAGTGTTAATTTTACCAAAAGTTTATCTACGAACATCAGGCAAAATGGTGAACTTTACAGTGGACCAGATCCGTGCCATCATGGACAAGAAATCCAACATCCGTAACATGTCTGTGATCGCTCACGTGGACCACGGCAAGTCCACGCTGACCGACTCCCTGGTGTCTAAAGCCGGGATCATCGCGGGGTCCCGAGCCGGAGAGACACGCTTCACAGACACTCGCAAAGACGAGCAGGAGCGCTGTATTACCATCAAGTCCACGGCCATCTCGATGTACTACGAGCTGGGGGAAAACGACATGGCTTTCATCAAGCAGTCCAAGGATGGGCTTGGCTTCCTCATCAACCTGATTGACTCACCGGGCCATGTGGACTTCTCCTCTGAGGTCACAGCTGCCCTTAGGGTCACCGACGGCGCACTGGTGGTGGTCGACTGCGTCTCAGgtgtgtgtgtgcagacagaGACTGTGTTGAGGCAGGCCATTGCTGAGCGCATCAAGCCAGTGCTGATGATGAACAAGATGGACCGGGCCCTGCTGGAGCTGCAGCTGGAGCCTGAGGACCTGTTCCAGACCTTCCAGCGCATCGTGGAGAACGTCAACGTAATCATCGCCACCTACGGAGAGGATGAAGCGGGACCAATGGGTGCCATCATGATTGACCCTGTGATTGGTACCGTGGGGTTTGGGTCCGGCCTCCACGGCTGGGCCTTCACTCTAAAGCAGTTTGCTGAGATGTACGTAACAAAGTTTTCTGCTGGCAAAGACACCCAGCTGGGATCAGCGGAGAGGTGTAAGAAGGTGGAGGACATGATGAAGAAGCTGTGGGGAGAGAGGTTTTTTGACCCAGCCACTGGGAAGTTCAGTAAGTCTAACCTTGGTCCTGATGGTAAGAAGCTGCCCCGTACCTTCTCTCAGCTGGTCCTGGACCCCATCTTCAAGgtaTTTGATGCCATCATGAACTTCAAGAAGGATGAGACAGCCAAGCTGATAGAGAAGCTGGACATCAAGCTGGACTCTGAGGACAAGGAGAAGGAGGGCAAGCCCCTGTTGAAGGCGGTGATGCGTCGCTGGCTCCCGGCCGGAGAAGCCCTGCTCCAGATGATCACCATCCACCTGCCCTCCCCTGTCACCGCCCAGAAGTACCGCTGTGAGCTGCTCTACGAGGGACCAGGAGACGACGAGGCCGCCATGGGTATCAAGAACTGCGACCCCAAGGCTCCCCTGATGATGTACATATCTAAGATGGTGCCCACCACAGATAAGGGTCGCTTCTATGCCTTTGGCCGTGTGTTCTCTGGCTGTGTGTCCACCGGCTTGAAGGTGCGCATCATGGGACCAAACTTCACCCCGGGGAAGAAAGAAGATCTCTACGTCAAGCCCATCCAGAGGACCATTCTGATGATGGGGCGTTACGTGGAGCCCATTGAGGATGTACCATGTGGGAACATTGTTGGTCTGGTTGGAGTTGACCAGTATCTGATTAAGACTGGGACCATCACCACATTTGAACAGGCCCACAACATGCGTGTGATGAAGTTCAGTGTCAGCCCTGTGGTGAGGGTGGCTGTGGAGGCCAAGAACCCTGCTGACCTGCCCAAGCTGGTGGAGGGACTGAAGCGTCTGGCCAAGTCTGACCCCATGGTGCAGTGTATCATCGAGGAGTCTGGCGAGCACATCATCGCCGGGGCCGGAGAGCTTCATCTGGAGATCTGTCTCAAGGATCTGGAGGAGGACCACGCCGGCATTCCCCTGAagAAATCTGATCCAGTGGTGTCCTACAGGGAGACTGTGTCTGAGGAGTCTGAAGTGATGTGTCTGTCCAAGTCCCCTAACAAGCACAACCGTCTGTACATGCGGGCTAAACCCTTCCCCGACGGCCTGGCCGAGGACATCGAGAAGGGGGACGTCAGCCCTCGACAGGAGCTGAAAATCCGCGCCCGTTTCCTGGCTGACAAGTACGAGTGGGACGTGTCAGAGGCCCGTAAGATCTGGTGCTTCGGCCCCGACGGTACTGGACCCAACCTGCTGATGGACGTGACCAAGGGAGTCCAGTACCTGAACGAGATCAAGGACAGCGTTGTGGCTGGCTTCCAGTGGGCTGTCAAGGAGGGTGTGTTGTGCGAGGAAAACATGCGTGCAGTCCGCTTCGACATCCACGATGTGACCCTGCACACAGACGCAATTCACCGCGGTGGTGGACAGATCATCCCCACGGCCCGCAGAGTGCTGTATGCCTGCCAGCTCACCGCCCAGCCACGACTGATGGAGCCGGTCTACCTAGTGGAGATCCAGTGCCCAGAGCAGGTAGTGGGTGGGATCTACGGTGTGCTGAACAGGAAGCGAGGACATGTGTTCGAGGAGTCCCAGGTGATGGGCACACCCATGTTCATCGTCAAGGCCTACCTGCCTGTCAACGAGTCATTTGGGTTCACCGCTGACCTGCGCTCCAACACGGGCGGCCAGGCCTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTCCAGGGAGATCCCCAGGACCCCACCACCAAGACTGCCGTTGTGGTGGCCGAGACCAGGAAACGCAAGGGGCTGAAAGAGGGCATCCCGGCCTTAGACAACTACCTGGACAAATTGTAAATGTTGTCCTGGTTCCCCCTAGCCACTACAACCCCCACCCCACTTGTGTAGATTGATAATGATTGGGTAGGCATACGCAATATGTGGAAGATTTCACCTAGCCTATCGGAGGGTAACGTGACGCTATTGGCATATTGCTTATGGTATACCTATCCGACCCTTTCAGATGTACACAGTGCCCAGGGGAAGGGACTAGGGCTTGGTTTGGAAGTTAGTGGTTCTCTGACCTTTTCCCCCCCCCCTTCTATTCCTCCATTGTACGAGTGAGGGATGGGACTGTACAGTGCACTGCGCAGTAGCGCTTGCCTAAATGGAAACCTGGTGACATGAATCCAAGGATGGGAAATGTCAATAATAAAGATGAATAGAAATTGTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0042221 response to chemical biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0009790 embryo development biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03234 EEF2; elongation factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613929.2 True 3314 mRNA 0.54 14 78038094 78046774

Neighbor

gene id symbol gene type direction distance location
LOC110530687 LOC106569523 coding upstream 60302 77973674 ~ 77977792 (+)
LOC110530684 LOC106569521 coding upstream 74233 77954717 ~ 77963861 (+)
LOC110530683 LOC106569519 coding upstream 118607 77894988 ~ 77919487 (+)
LOC110530993 LOC106569518 coding upstream 153703 77863590 ~ 77887401 (+)
LOC118965560 NA coding upstream 222174 77811815 ~ 77815920 (+)
LOC110530995 LOC106569526 coding downstream 25785 78072559 ~ 78188049 (+)
onecut3b onecut3 coding downstream 289127 78335901 ~ 78361471 (+)
LOC110530701 LOC106569539 coding downstream 545524 78592298 ~ 78597767 (+)
plekhj1 plekhj1 coding downstream 560639 78607413 ~ 78610245 (+)
LOC110530703 LOC106569538 coding downstream 579747 78626521 ~ 78636077 (+)
G749557 NA non-coding upstream 16281 78021343 ~ 78021813 (+)
G749547 NA non-coding upstream 39141 77998733 ~ 77998953 (+)
G749536 NA non-coding upstream 84113 77953768 ~ 77953981 (+)
G749535 NA non-coding upstream 85486 77952395 ~ 77952608 (+)
G749531 NA non-coding upstream 89474 77948322 ~ 77948620 (+)
G749585 NA non-coding downstream 143074 78189848 ~ 78191947 (+)
G749588 NA non-coding downstream 146895 78193669 ~ 78200686 (+)
G749654 NA non-coding downstream 177780 78224554 ~ 78224777 (+)
G749655 NA non-coding downstream 179680 78226454 ~ 78226721 (+)
G749657 LOC106569530 non-coding downstream 182661 78229435 ~ 78233263 (+)
G749137 NA other upstream 655483 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 765434 77266652 ~ 77272660 (+)
G748917 NA other upstream 857966 77179344 ~ 77180128 (+)
G748905 NA other upstream 860745 77150663 ~ 77177349 (+)
G749663 tcf3 other downstream 197436 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 750368 78797142 ~ 78797548 (+)
G750854 NA other downstream 932456 78979230 ~ 78979981 (+)
G750935 NA other downstream 1148496 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 1298663 79210727 ~ 79347454 (+)

Expression


Co-expression Network