XLOC_025896 (fam20ca)


Basic Information

Item Value
gene id XLOC_025896
gene name fam20ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 61896514 ~ 61961833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050763
ATGATACTCTTTCGTAAATTCCGCGTGCTGATTTTAACGGTGTTCCTCATCGCCTGCACCATGCACATCATGATAGACCTGTTACCCAAGCTGGAGAAGCGGGGCAGCGGCTGCTCCTGCGCTCACACGCCGGGCGAGGAGCCTCGATCCTGGGGTAAACAGCGAGCCAGAGCCCACTCTCTGAGATTACTGCAGGATTTCAGCAATGAGCCCAACTCTAATTTGACGTCGCAGTCGCGGGAAAAGGTGACAGAGAGAGCCGGCTCTGAGAAGCAGGGCTCCGGGAAGAGGGGGCTGATGCGGGAGGCGGACAGCCGGCAGAGGCGCACTGATGTGCGGGTCTCCTCCGTGCTGCAGTCGCTGTTTGAACATCCGCTCTACCGGACCGTCCTGCCGGATCTAACCGAAGAGGACACCCTTTTCAACCTCAATGCGGAGATCAGACTGTACCCCAAAGCTGCCGGACAACAAGAATGGCATAATGAGGGTAACGTGGAGGAGGAGGAGTTCAGTCCTCCAGGAGAAGCCAACAGCGAGTCCTACCCAAACTGGCTGCGCTTCCACATCGGGATTAATCGATACGAACTATACTCCAGACACAATCCTGTGATCACCGCGCTGCTCAGAGACCTGCTgtcccagaagatcagcagtgTGGGTATGAAGTCTGGAGGCACTCAGCTCAAGCTCATCATGTCATTCCAGAACTACGGCCAGGCCCTCTTCAAGCCCATGAAACAAACCAGAGAACAGGAGACGCCACCAGACTTCTTCTACTTCTCTGACTTTGAGCGACACAATGCTGAGATCGCTGCATTTCATCTGGACAGAATCCTGGATTTCCGGAGAGTTCCCCCGGTGGCCGGCCGCTTGGTGAACATGACACGCGAGATTCGAGACGTGACCCGGGACAAAAAGCTCTGGCGGACATTCTTCGTTTCCCCAGCCAACAACATCTGCTTCTACGGCGAGTGTTCGTATTACTGCTCCACAGAGCACGCCCTGTGCGGAAAACCCGACCAGATCGAGGGCTCGCTGGCCGCGTTTCTTCCTGATCTGGCACTAGCGAAACGCAAGACCTGGAGGAACCCCTGGCGCCGCTCCTACCACAAGCGCAAGAAAGCTGAGTGGGAAGTGGATCCAGATTACTGTGATGAGGTCAAACAGACTCCTCCGTATGACAGAGGCACACGACTGCTGGACATCATGGACATGACTATATTTGACTTTCTCATGGGCAACATGGACCGCCATCATTACGAAACTTTTGAGAAGTTTGGAAACGACACTTTCATCATTCATTTGGACAATGGCAGAGGAAGATCACATATTTGTCTGTGTTTGCATTTCTGTTTTAGAGTGAAGAGGTCGACGTACCTGCGTCTGCAGCTGTTGGCTAAAGAGGAGTACAAGCTGAGTTCTCTAATGGAGGAATCGCTCCTGCAGGACCGCCTGGTGCCCGTCCTCATAAAACCCCACCTGGAGGCGCTGGACCGCCGGCTGCGGCTGGTGCTGAAGGTGCTCTCCGACTGTGTAGAGAAAGATGGATTTTCAGCAGTGGTGGAAAATGACCTGGATGGACAGCCCTCAGTGCACGGAGGCAGGTAG
>TCONS_00050762
ATGATACTCTTTCGTAAATTCCGCGTGCTGATTTTAACGGTGTTCCTCATCGCCTGCACCATGCACATCATGATAGACCTGTTACCCAAGCTGGAGAAGCGCGCGGCGGGCTCGAGCTCCAGCGCTGGAGGGGGCAGCGGCTGCTCCTGCGCTCACACGCCGGGCGAGGAGCCTCGATCCTGGGGTAAACAGCGAGCCAGAGCCGCCGATCCCGGCTGGCCTAACAAGCACTCTCTGAGATTACTGCAGGATTTCAGCAATGAGCCCAACTCTAATTTGACGTCGCAGTCGCGGGAAAAGGTGACAGAGAGAGCCGGCTCTGAGAAGCAGGGCTCCGGGAAGAGGGGGCTGATGCGGGAGGCGGACAGCCGGCAGAGGCGCACTGATTCGCTGTTTGAACATCCGCTCTACCGGACCGTCCTGCCGGATCTAACCGAAGAGGACACCCTTTTCAACCTCAATGCGGAGATCAGACTGTACCCCAAAGCTGCCGGACAACAAGAATGGCATAATGAGGGTAACGTGGAGGAGGAGGAGTTCAGTCCTCCAGGAGAAGCCAACAGCGAGTCCTACCCAAACTGGCTGCGCTTCCACATCGGGATTAATCGATACGAACTATACTCCAGACACAATCCTGTGATCACCGCGCTGCTCAGAGACCTGCTgtcccagaagatcagcagtgTGGGTATGAAGTCTGGAGGCACTCAGCTCAAGCTCATCATGTCATTCCAGAACTACGGCCAGGCCCTCTTCAAGCCCATGAAACAAACCAGAGAACAGGAGACGCCACCAGACTTCTTCTACTTCTCTGACTTTGAGCGACACAATGCTGAGATCGCTGCATTTCATCTGGACAGAATCCTGGATTTCCGGAGAGTTCCCCCGGTGGCCGGCCGCTTGGTGAACATGACACGCGAGATTCGAGACGTGACCCGGGACAAAAAGCTCTGGCGGACATTCTTCGTTTCCCCAGCCAACAACATCTGCTTCTACGGCGAGTGTTCGTATTACTGCTCCACAGAGCACGCCCTGTGCGGAAAACCCGACCAGATCGAGGGCTCGCTGGCCGCGTTTCTTCCTGATCTGGCACTAGCGAAACGCAAGACCTGGAGGAACCCCTGGCGCCGCTCCTACCACAAGCGCAAGAAAGCTGAGTGGGAAGTGGATCCAGATTACTGTGATGAGGTCAAACAGACTCCTCCGTATGACAGAGGCACACGACTGCTGGACATCATGGACATGACTATATTTGACTTTCTCATGGGCAACATGGACCGCCATCATTACGAAACTTTTGAGAAGTTTGGAAACGACACTTTCATCATTCATTTGGACAATGGCAGAGGAAGATCACATATTTGTCTGTGTTTGCATTTCTGTTTTAGAGTGAAGAGGTCGACGTACCTGCGTCTGCAGCTGTTGGCTAAAGAGGAGTACAAGCTGAGTTCTCTAATGGAGGAATCGCTCCTGCAGGACCGCCTGGTGCCCGTCCTCATAAAACCCCACCTGGAGGCGCTGGACCGCCGGCTGCGGCTGGTGCTGAAGGTGCTCTCCGACTGTGTAGAGAAAGATGGATTTTCAGCAGTGGTGGAAAATGACCTGGATGGACAGCCCTCAGTGCACGGAGGCAGGTAG

Function

symbol description
fam20ca Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in amelogenesis imperfecta. Orthologous to human FAM20C (FAM20C golgi associated secretory pathway kinase).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-750 Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in amelogenesis imperfecta. Orthologous to human FAM20C (FAM20C golgi associated secretory pathway kinase).

Ensembl:

ensembl_id ENSDARG00000074317

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050763 False 1608 mRNA 0.54 11 61896514 61961833
TCONS_00050762 True 1638 mRNA 0.55 10 61896514 61961833

Neighbor

gene id symbol gene type direction distance location
XLOC_025895 zgc:113295 coding upstream 352764 61540527 ~ 61543750 (+)
XLOC_025894 znf1004 coding upstream 362668 61522759 ~ 61533846 (+)
XLOC_025893 FP340292.1 coding upstream 475429 61420079 ~ 61421085 (+)
XLOC_025892 bri3 coding upstream 497576 61391636 ~ 61398938 (+)
XLOC_025890 NA coding upstream 512322 61357205 ~ 61384192 (+)
XLOC_025897 rai1 coding downstream 38989 62000822 ~ 62053314 (+)
XLOC_025898 NA coding downstream 92861 62054694 ~ 62061838 (+)
XLOC_025899 drc3 coding downstream 165148 62126981 ~ 62138955 (+)
XLOC_025900 GID4 coding downstream 178244 62140077 ~ 62149828 (+)
XLOC_025901 noxo1a coding downstream 199416 62161249 ~ 62169060 (+)
XLOC_025429 BX649540.1 misc upstream 31647478 30248739 ~ 30249036 (+)
XLOC_025891 NA non-coding upstream 519459 61368489 ~ 61377055 (+)
XLOC_025888 NA non-coding upstream 544508 61338539 ~ 61352006 (+)
XLOC_025889 NA non-coding upstream 552806 61340693 ~ 61343708 (+)
XLOC_025885 NA non-coding upstream 855399 61039073 ~ 61041115 (+)
XLOC_025904 NA non-coding downstream 246001 62207834 ~ 62250574 (+)
XLOC_025908 NA non-coding downstream 342209 62304042 ~ 62306549 (+)
XLOC_025913 NA non-coding downstream 406891 62368724 ~ 62384693 (+)
XLOC_025914 NA non-coding downstream 462502 62424335 ~ 62542931 (+)

Expression


Co-expression Network