XLOC_025897 (rai1)


Basic Information

Item Value
gene id XLOC_025897
gene name rai1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62000822 ~ 62053314 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050764
atgccCGTCTTAAACAACTGTGGGTGGATAGTGCTTAACTTCGTGGAAAACAACGATTTAATTAATAATCTGATAatggagcaaaataatctgataatggagAAAAATTATCTGATAAtagagcaaaataatctgattatggagcaaaataatctcataatgtatcaaaataatctgataatggagCAAAAGAAACTGATAATGGAGaaaaataatctgataatggagcaaaataaactgataatagagcaaaataatctgataatggagCAAAAGAAACTGATAATGGAGaaaaataatctgataatggagcaaaataaactgataatagagcaaaataatctgataatggagCAAAATTATCTGATAatggagcaaaataatctgataatggagaaaaataatctgataatggagcaaaataaactgataatagagcaaaataatctgataatggagcaaaataatctgattaTGGAGCAAAATAAACTGATAAtagagcaaaataatctgataatggagAAAAATGATCTGATAAtagagcaaaataatctgattatggagcaaaataatctcataatgtatcaaaataatctgataatggagaaaaataatctgataatggagcaaaataatctgataatggagaaaaataatttgataatggagcaaaataatctgataatggagaaaaataatctgataatggagaaaaataatctgataatggagcaaaataatctgataatggagaaaaataatctgataatggagaaaaataatctgataatggagaaaaataaactgATAATGGATCAAAATCTGATAATGGATCAAAATCTGATAAAGgagcaatatatttatatatatatatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagacgtatCTGCCTGCCTGCCATTGACCGAGAATATCTGCCATTTTCCGCGTTGCAGGAGGCTCCAGAGCACCGGGATCCAGGCACAGGCACCGCCACAGAGCCCCTATCTGGAGTCATGCAGTCCTTCAGAGAGCGGAGTGGTTTCCATAGCAACCAGCACTGCTACCAGCAGGAACCCCAAGAATTACCGCGCCTCGAGAGCTACAGACATCATTACAGCCAGTCCAGACAGGGCTACGAGCCACACGCTTTAGCTTCTGCCGGGATGTCAACAGCGGGATCTAAAGACTGTTACGGACAGCAGAACTATCCTGTCTACACCAGCGCCACACAGACTAAGAAACCATACAGAGGAGGCAAAACTCCAAACCAGCATCTGCAGGCGGGCTACAGTAACCACATGGGCACCGGATACACGGCCCAGTACATGAGCGAAGGTCACCTGCAGCAGAAATGGGATGAGTCGGCTCAGATGACCCAGTTCGAGCAGGACATGGTGGGTCGTCTGGAGTCTGGGTCATCGCAGTACCTAGAGCAGAACATGCTAGCTATCTCTCAAAGTCAGTGCCATCTCCCCGCCCAGTCCTCCGCCCCAGTCTACACCAGTCCCCATCAGCAGGGAATCCCACCCAACCCGGCGCCATCTCCTTTAATGTACCCACAAGGCCACATGCATTTCCCTCAGCACTCGCAAACCTCTTCTTCACCTTCATCGGCCTATATGGACAAATGTAATACAGTGTCACATGGCTACAAAGGCTATGGGATACCACCTAACGCCCAGTATGGAAGGCAGCTGAGCAATCACAGCAGTCTAAAACAGAGTGGATACAGACCTCAGAATAATTACGGTTACCAGCAAACTCCCTCGAGGTCTGGGTTTGAGCAGGGCTCCCTGCAGGGCATGTCTGGTACACAGGAGAGCCTTCAGAAATTCCAGCACTACAATCAGACCCAGCAAAACTACTGCATAACTGATATTTCAGTAAGGTCGCCGGAACAATACTATCAGACCTGCAGTCCTAGTTCCAGTCATTCACCGGCGAGGTCTGTGGGAAGATCTCCCTCGTACAACTCCACACCATCACCCTTGATGGCGAATGCTGATTCCTTCCAGTATGGCCAGCCTCCCATCAACCCTGGGGCTTCATCATCCACAGGTTTGCAGAATGAACAAAATATGCTGATGCCCCCTCACACCCACTCATCGTCCAGTGTGAACCAGACCCAGAGCTTCTCTGGATCAATGAAAGAACGATTCTCAGAGAAGCTCCTGACCAACCCTAGTTTGTGGAGCCTCAATGCCCTAACTTCTCAGGTTGAAAACATCTCCAACAATGTCCAGCAGCTGCTGCTGTCTGAAGCTCTCATGGCGAGCAAAAAGACCAGTAAACGAAACCATCCTAAAAAGGGAGAAGATTACAGAGGTCAACTGAAAGGTATGGATGAGTCTTGTCCTGAAAATCAACATGGTCCTTCTCCGTCTGATGCTTACAGCATTCCCAGGTCCATGACAGCAGAACTGCAGGAGGGAGGATACTCCAGCAGCACCGAGGACCAGATGGAAaggaactattattattttggtcAGGAAAAGGGTCAAGGACATACCCAGACACACTCCCGTCTCAGCCTTGACACAGTGTCCACATGCTCCTTAAACTCGGCTGACGATGTCTCCGTTAGGTCAGGAGACTCAGTTCGAAGTCTCCAGAGTGTAGCCTCGGAGGATAATCTTAACTGTGACCCCAGAGTACAAAGGGCACTGTCTGAAGAGGAGCCCAATAGCTCTCTCTGCTGCATTAGAGATGAGAGGTCTCCCATCGGCGTAACAGCTCCAAGTCCTATGAAACAAGAGAGTGATTCACCACCAGACATAAAACGTTCAGAGAGCACTCAAAAGGAGAACTTTGAGGAGTCAGCATGGACCGAGAGGATGGCTGATGAGGACAAAACCGAACAAAGCAAGCCGTCTGCTGAGCATGATTGCAAAGGAGAGGTCACTGAAAAACAAGAGAAGTGGCTGGAGGATGAGAAAGGTCCTGCtctttttcagaaaataaataaaaccgtGCTGGAGGAAGGTTACTCCTATGAAACGGAAGAGAATATCTACCAAGGGCTACAAAACAAATATGATTCGGAGAAAGAAAACACGACGGAGATAGACTGCTTTGCTGAACTCAATCACAAATGTGACGAAGACACAGAGATAAAGACAGAGCATTTTAAATCAGAGCCACAAACCAGTGTTGAAATGCCAACGGAAGACTCTCCCAGCAATTCAGCCACTGAACTGTGTTTGCCAGAGAAAGAAGAACACTCAAGCAGTGAGAATTCAGTAGAGACCCCAACATGCACCCTTGAGGGACCTGCGGACACCCTTGAGGAGCAGACTTCTGTCCTCTCTCATACGTCCACTGAGGTAGGAGATGAAAAGGATTCAATTCTGACAAGCTCAGAGGAGGTCATCAATAATAAAACAGAGTCACAGGAGTCTTTTCCAGACGTCTGTGGCACATATGAGGAGGCGGAAAACATGCAACAAGTAAACACAGAAACTGCAGAAAGCATTGCCCAGGACACACCACACAGAGACAGCGAAAGGAGGTCAGTCATATGTGACATTGCACCTCAGACTCACACTGCCAAGAGTGACTTCTCAGCTCTCAATGAGAAAACAACACCTTTGGCTCAGGCAAGGGATCATCACATCGATTGTAGTGATGCAAAGGTGCTGGAGCCTGACTCTCCTCAGTTGCCAGGCAAGTCGATACTGCACTCTGCACCATCTTGGGCTGACACTCCACCCTCTCCCAAGAAAGCGGACGAGGATATGGAGCCAGGAATAAGCTGTCCCAGTGCAGTGACTCCCTCAGCCAAACCAGAGGCTTTTACGCCATCTTCACATACAAGAATGTTCGGTAAGAAACATGTACGAGGCAGGAGGAGACCAATGAGCTCAACTGCAGGAATAAGAAGGCAGCTAAGTATAGAAGGAGACACTCAAACTCCCAATATACCTTCAAGCAAAACCACCGATATTGTCGATCAGATGGAAACTGCCCATCAGAATGTTAGTAGTCAAACACCAAAACTTGTTACAGAGAGTTTACCATCACGGATGTGCACTCGCTCCTACGGTTCACAAGGTAGCCCAAAGGTCTCCCCTCAAGACAGAAGGAAACCAGGTGCAAAACCTGCTCCAAAACCAAGCTCAAAAATAGCTGTCAAGCCAGGTCCAAAATCAAATCCAAAACCTGCACCAAAGCATAGTCCAAAATCAATTACAAAACCTGGTTCAAAATCAGTTCCTAAATCCGAGGTCATGCCTAGTGTAAAACCTGGCCCCAAGCCAGGTTTAAAATCCACAGGGTCCAAAGAAAGTCCAAAGCCTTGTCCTAAATCTGGCCCAAAATCTGCCACTAAATCTGGTCCAAAAACTGCTTCTAAACCCGCCTCAAAGCCTGGGTCAGTACCAGGAGAGATACTTGCTCCAAAGTCAAATCAAAACACAGCAGAGTCAAAGCCAACTGTGGCATCAGTAGCTAAAGGCCCCGGTCGACCGAAAGGAATCAGTAAGAACAAACAGATGAAGATGAAACAAGATGAAAATGTTCAAACAACTACAGAACATACCAAGGACACACACTGTACTCAAGAACTTAATTTGCAAGATGTGACCACAGAATTAGCTTTGGACACAATTGTTGGTGTTGTGGATACCACTAAAGGTGAAACCGTGGCTCCCACTTTGGAGTGTACGCTAGACAGCAGCTGCTTAAAATCGTTAGGGAGAGAGCAAAAGTCTATGGTGCTAAGATCACGGAAGCAAACAAAAGAGAAACTGACTGAAGAAAAAGAACAAAACGATGATAAATCTACTAAGACACCTTTAGCAATGGTCATGCAGGATGTTACTGTGGATCAGTCGTGTAAGACTGAACCTTCAAATCTCGAATTGCCCAAGCAGAAGGATGTCTCCACAGATTCACTTCAACAGCCAGATGAAGAGGTGGTTTCCACCAAGAGAAAATGCAGTTTACCAACCTCAGAAACCAAAAAGAGGAAGAAAGGAAGGCAAGATGAAGTGAAGGCACAGGATTCTCCATTAGACATAGTCCACATTCCAAagggaaagagaaagagaggacAACGTTTGCTTGTGGAATCAGTAAGCACTACTTTAACTACTGATACCCTTCCCACTGATGACATCAGTGACGTGCCATCTGTACCTCCTCAGTGTCCCACTAAAACCAAATATTTGCCTCCTCGGAAAGGCAGGGGACTTAAATATGAGGCAATGGTTCAGAAAATAACATCCCCAGGGTCCAAAAAGCAACCTGTAAGTAACCAAGCAGACATTGCACTAGAAGAATCCACGTTAAAACCAGTGCCGCAGGTACCAGATCAAAAGGAGACAACGAACGCCCCTGAGATGCCTCAGAAGGAGGGCGAAAGCACAATCAGTACACAAGAACCCGAAAACACAGAAATTCAAACTCCAAGGAAGAAAAGGAGAAAGTGGGCCACTGTGGAGAGCAGCGATGCTCCAGATGTAAGCCTGGATGGTGGAAGTCTGATTATCAACACACCGAGACTAGCTAAACAGAGAGCCATTAAAAACAACCACGAGATGCATCTGAAGCAGcgaaagaagagaagaaaaggcaCTGAACCTCAAGAAAACATCCCCATAGTGGAGCAACCAGAGTCTACACAGACCGAAGTCTTGCCTACATCTCCACCTCCGCCAGAAGCTCTTGAACAGACAGAGTGCAAGGAGCCACCAAATGAAGTATGCGTACCACTAATGAAACCCAAACGCGGCAGGCGGCCATCACTTAAAAAGAAACAAGAGGAACTCTCGAAGAGTCAAAAAGAAGACGAAAACGCAatcgagaagaaaaaaaagactgggcccaaaaaaaagtgtgtggatgcCGTTAAAGTTGTAGTGAAGAGACCTAAGATCAAGACAAATGAACTGTCTCCAACAGTACAAGGGACATTATCAGACTTGCGCCCAGATCTAAGTGACGGAAAATCCTCTTTCAGACCATACGTACACATCGACAGCTCTATGGACGTCGCATCTTCATGCACTATCGTCAACAGGCCCGAAGAAGAGCAGATGCTCGCTCAGGCTAGGACAAAGAGTGTACCTAATATCAAAAATCAAGCTGCAAAGACAGGGTCCAACTCTTCAGTAATGCTCCAGGGCCCCTTAGTTAACAAAAGCCTATCTGACAGATGTCTAACGTGCTGTTTATGTGGAAAGCCAGCTAATTACAGAGAGCTCGGGGACTTGTGTGGCCCCTATTATCCTGAGGACTGCATACCACGAAAAACACTGTCATTAACACACAGGAGTGAATTCAGGCAAAACAGCAACTGTGCCAACGAGACGGAGAGTAGTAGCATTGTGAAAAACACACAGAGTGTGTGTGAGGAGGCCATCCATCAGGAAAAGGCAAACGAAGGGCACTCCAGGAGGAGCAAAAGAGCAATTCGGGAACTGTCGAGAACCAGGCCCAGTTCGCGAATGAGGTTTAAAAGGCTGCTGATTTTGCAGAGCAGACTTAGTGGAGCGTCTCCCCCTGCTGGTGTGGAGGGCATTGAAACAAGTCTGCAGAGATTACAGATGGAGGCCGAGGAAAAAGAGCACTGGGCTCATGAAGCGTGTGCTGTCTGGACCACTGGCATAGTCCTGGTGGCGGATAAACTCTTTGGACTGACCGAGGCTGTTCAGAAAGCTGCACATGCAAAATGCTCCGGATGCCAAGGTGAAGGAGCCTCGGTCTGCTGCGGCTGGAAGAGCTGTACTCAAAGCTACCATTATATCTGCGCCAAAGAGTCGGGCTGCACGTTTGAAGAAGAAACCTTCTCTATTCGGTGTCCGAAACACAAGGAGATGTAATATATAAACACGGGCAGGACATGAAGAGTGCTGGAGGTCAGCAGAGGAGTGAAGGAGGACCAGCTTCTGCATGTGTGCTGCCCGAACAACTGGAGCTTCAGCggaagcacaaacacacactgtagcaatacacacacacacacacacacacacacacacacacatacgcacacacaaacatatgctcaaaaaaaaaagggaaagatGCTTCTGTTCTGATCCGATGTGCCATTCCTCCATCAAACACACTGAAGATGTCATGCAACTCACTGGATGTATTTCAATGGACACTTACATGTtacaaagaagaagaaaaataacgataacaataaaataaaggaaactgTATGGTGTGCTTTACAGGTCTAAATATTCTGATATCATTAAAAAAGAAGatataaatgcattattttaatatGCCGCTGTACGCCGACATGTAGGCTTATTTTCATGTGCATCTGAAGATAAAGCAGATCAGCCACCGCGCATCTGGAGGAGGGAAATGCCCTGCGTTCATGTTGTGTGTGAAAGCATTTCGGGatgggatgggggggggggggggggggttctgtGGAAATCACCATTTCTGGCTTGATTTACTCCGGCGTGTGCTTCATAACACTGTGGAGAATACAGAAAACCTGACCCTGGACCTAACAAActgtcttaaaggcacagtacaccccaaaataattcaaatgtcaTTATGTTATTTGCTCACAAAGGATTTACCCCCGTTAATTTCCTTTAATTTGCATGCTACATTTATAGAAATGATCAATTTAATTCCAAAAATCATTCGAATATTGCATAAATATGGTATTCTGTGAAGACATCTTGTATAATTCCTACCgtaaacaatgtttgattaaCAATATGCCCCACAAAGAATGTGTTGCGGAACATGAAAAAATTACTATTGAAATACAATACGATAAAAATCGTGCTGCGGAACATTAAAAAattactattaaaatacaatacgATAAAAATCGTGTTACGGAGAATTAAAAAATTACTAttgaaatacaatatattaaaaaaatgtgttgcgGAACATGAAACAATTACTATTGAAATACAATATGATAAAAATCGTGCTGCGGAGAATTAAAAAATTACTAttgaaatacaatatattaaaaaatgtattgcgGAACATGAAAAAattactattaaaatacaatacgATAAAATCGTGCTGCGGAAGATGAAAAAATTACTATTGAAATACAATACGATAAAAATCGTGTTGGGGAGAATTAAAAAATTACTAttgaaatacaatatattaaaaaatgtattgcgGAACATGAAAAAATTACTATTGAAATGCAATACGATAAAAATCGTGCtgtggaacaaaaaaaaattactattgaaaTACAATACGATAAAATCGTGCTGCGGAAGATGAAAAAATACTATTGAAATACCATACGATAACAATTGAGTTGcggaacataaaaaaaattactattgaaaTAGAATACGATAACAAATGTGTTGCGGaacatgaaaaattacttttaaaatacaatacGATAAAAATCGTTTTGCGAAACGTGAAAAAATTACTATTGAAATACAATACGATAAAAATCGTGTTGCGTAACATGAAAAAATTACTACTAAGTACAATACGTTAAATATAGGTTAAAAATAATGTGGAGGAACAATAAAAATAGGAAATTTGTGTCTGTGAACACAAATCTATAAATTAAATTTCATGACTATATAAAAACTTACTATCAAACTTACTGCACGCAAAAGATGTGACATGTGAACGACCCTTTACTCTTCCCTCACGTTCCTTACATGGACATGTGCAGCTCAAGCATATTTCTAAATATCTCAAATGAAGAAGTGAAGGTTTTGGAACGACACGCAAGTATATCAAGTCACAAATGGTGATTTTTGCTTGAAGTCTGAGCCTCAGCGGCGTGAAGAGATCCACACGGTGGACAGactcttgtttgtttttgtgaaatgaTGCTGAAGAGACGTGAAGGATTAAAAGCGAGAGCTCATTTATTCAGAAACGTGTACGTGACCAACATATTAGAGGCTTCACTCCAGCGCAGTATTACAGGTAAGAGCGCAGCATATAGAGCCCACCGACTCATCACCGTATTATTTGACTCCTGAACTCTTAAGTACTGGTGTATATAAAGTCTTTGATGCTGTTTAAATGTAAGATGTGATGTACTATTATAATTGTGTATAGTATTTCTTAGAGatgtttattttctataaaaacaaatatgttatTGCTTACAAAAGTTATTAAAACAACCAACTGAAAGGAC

Function

symbol description
rai1 Predicted to enable metal ion binding activity.

GO: NA

KEGG:

id description
ko03000 Transcription factors
ko03021 Transcription machinery
ko03009 Ribosome biogenesis

Ensembl:

ensembl_id ENSDARG00000076679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050764 True 9170 mRNA 0.42 5 62000822 62053314

Neighbor

gene id symbol gene type direction distance location
XLOC_025896 fam20ca coding upstream 38989 61896514 ~ 61961833 (+)
XLOC_025895 zgc:113295 coding upstream 457072 61540527 ~ 61543750 (+)
XLOC_025894 znf1004 coding upstream 466976 61522759 ~ 61533846 (+)
XLOC_025893 FP340292.1 coding upstream 579737 61420079 ~ 61421085 (+)
XLOC_025892 bri3 coding upstream 601884 61391636 ~ 61398938 (+)
XLOC_025898 NA coding downstream 1380 62054694 ~ 62061838 (+)
XLOC_025899 drc3 coding downstream 73667 62126981 ~ 62138955 (+)
XLOC_025900 GID4 coding downstream 86763 62140077 ~ 62149828 (+)
XLOC_025901 noxo1a coding downstream 107935 62161249 ~ 62169060 (+)
XLOC_025902 sco1 coding downstream 143358 62196672 ~ 62203711 (+)
XLOC_025429 BX649540.1 misc upstream 31751786 30248739 ~ 30249036 (+)
XLOC_025890 NA non-coding upstream 616630 61357205 ~ 61384192 (+)
XLOC_025891 NA non-coding upstream 623767 61368489 ~ 61377055 (+)
XLOC_025888 NA non-coding upstream 648816 61338539 ~ 61352006 (+)
XLOC_025889 NA non-coding upstream 657114 61340693 ~ 61343708 (+)
XLOC_025885 NA non-coding upstream 959707 61039073 ~ 61041115 (+)
XLOC_025904 NA non-coding downstream 154520 62207834 ~ 62250574 (+)
XLOC_025908 NA non-coding downstream 250728 62304042 ~ 62306549 (+)
XLOC_025913 NA non-coding downstream 315410 62368724 ~ 62384693 (+)
XLOC_025914 NA non-coding downstream 371021 62424335 ~ 62542931 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_02719034_02729100 RAI1 coding CI01000113 null 2718742 ~ 2729100 (-)
bowfin (Amia calva) AMCG00018433 NA coding CM030135.1 CM030135.1 11047982 ~ 11053345 (+)