LOC110530704 (LOC106569544)


Basic Information

Item Value
gene id LOC110530704
gene name LOC106569544
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78816120 ~ 78824322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613951.2
CTGAACATCGGTGACAGAAAAACCGGCAGGGCCGTGGGGGAGCTTCAGCCATCTTCGGATTCTCTACCAGCAACCGAGAGGGAACGTGTACGGGTAGCGACAAACAACAAAATTAATCGATTTGCGAGACGAACAGGAAGCGGAAACTAGCGAAGCGCTACCTAGCTTAGCAACAGATAGCTCGTATCAGGGAATACAGATCTGGTTAGCTGCAACTATGGAGTCCGGAAATACAGGGAGAGGAGGCTGGAACAACAAGTTCCGGCCAGCCCAgaagaacaggatgagtgtgaaCATTCTCCGTCAGGAGGAGCTGATCGCCCAGAAGAAGCGGGAGATCGAGGCTAAGATGGCAGAGCAGGCCAAGAAAAAGAGCCTTCAGACTCCCAACAAGCCACTGCCACCAAGTTTACACAGTTTACAGGGACACTCTTCGAACAACAACAAGTATGTGAACGATGGAAGCTTCTTGCAGCAGTTTATGAAGCTTCAGAAGGACAAACCCAGCTCTGACTCTGGCTCCAGTAGTGACACCAAAGCCCCGTCCTCATCCACCCCCAGTCCGTCGTCAGGAGTGTCTCAGCCCCAGATGAAGAGCATTCTCATCGGCAAGCGCCCCGGTCTAGGGATCAGCAGCATGCTGAACCAGTTTAAGAACTACTCCCAGTCCAAGAAGAACCCACTTCGTCCCCAAAGACCTAGCATATTCAGCTCCccagatgaagatgatgatgatgatgatgatgatgaggaagtTGATGACTCAAGCTTCCTAGAAATCAAAGTCTTTCCCCCAGAAGACCGAGACACACGACTTATTCTGGACAAGATGGCGGCCTTTGTGGCTGAGGGAGGGCCTGAGCTAGAGAGGAAGGCCAAAGAGGACTACAAGGACAACCCTGTTTTCTCATTCTTGTATGATAATAACAGCCGGGATTATCTTTATTACCGAAAGAGAGTTGCTGAACTCCGAAAGGATCACTCAAAACATGAGACACCATCACGTTCTCATGTCTCCCCCCCAGTGGACGAGGAGACACAGAGGGTGGCTGAGAAGCTGGCCATGTTTGTGGCCGATGGTGGCCCCGAGGTGGAAGCCATCGCCGCCCAGCACAACCAGGAAAACCCCACCTTCAGTTTTCTATATGACCTCCAAAGCCCCGCCCACCGTTTCTAcaaggagaaggtggaggagtaCCGCCAGGCCAAAAATGCCCAGAGCCCCCCTCCAATGATTAAGCAGGAGCCTGGGGTGGAGCTCAAGAGACCGGCCGCCCCTCCCCTGAcctatcctccccctcctccGCCCCCTCACTACCCCTACCTGGTGGGTCAAGTAAAGCTGGAGCCGGGTCTGGGGATAAAACAGGAAGTGTCAGGTCCGCCCGtggtgaagaggaagaggaagagccgCTGGGGGTCGGAGGACGACAAGGTGGATCTGTCACTGCAACCCATCATCATCCCCAAGGAGGAGGAGCCAGAGCCCAGCCCGTGTCTCTCTGttaaTGAACTGAGGGATCTGGGCTACAAGAAGGGAAAGCCTATGGGCCTGGTGGGAGTGACTGAGCTCTCAGATGACCAGAAGAAACAGCTCAAAGAGCAACAGGAGATGCAGGAGATGTTTGACATGATCATGAAGCATAAGCGTGCGATGGCGGAGATGCAGGTGATGTGGGAGAAGGCGGTGCAGGACCACTCCCACGAGTACGACAGTGACGAGGAGGTGGACCAGCAGGCTGGCACCTGGGAGCACCGCCTCCGGCAcatggagatggagaaaacacgtGAGTGGGCGGAGTCGCTGACTGACATGGGAAAGGGGAAGCACTTCATTGGTGACTTCCTACCTCCGGAGGAGCTGGAGAAGTTTATGGAGACCTTCAAGGCACTCAAGGAGGGCCGTAACCCAGACTACTCGGAGTATAAGGAGTTTAAGCTGACGGTGGAGAACCTTGGTTTCCAGATGCTCATGAAGATGGGCTGGAAGGAGGGCGATGGGCTTGGCTCTGGCGGACAGGGCATCAAGACTCCGGTCCACAGGGGAACCACGGCTGTTGACGGGGCAGGGTTTGGCGTGGACCGGCCCTCTGTGCTCTCAGGACAGGACGATGAGTATGATGCTTTCAGAAAGAGGATGATGCTGGCCTACCGCTTCAGGCCTAACCCACTGaaCAACCCGAGGAGGCCATACTACTGAAGAAGAGGTCCGAAGCTTGGCTGACTTCGTCgacttttcattttttaaacaacCAACAGTGGCGTATTGATATCTCTTTGTTGTGGAAACAAACTGTAGGACACTCAGTTCAAGTAATCTCCTCTAGATTGTGTGGAATTGTATGGTTGGTGATAAACTGTTTAGGCTGGAGATTAAGGATGGATTTGTCTGATCTAAAGTTTTCTAAGAGTCAGTTGATGTTCTTACTGAACTGCAGAATGAAAGTTTCCTATTTGATCAATCGGACAGCTAGGGTAGCGTTGTGATGGCTCGCTATCATGATCTGATTTCACAGTCACGACTCATAACACAGaacaacctacacacacacacatacataaatagTGGTGGAATAAGTACccgattgtcatacttgagtaaaagtaaagataccttcatagaaaaggACTGAAGTGaaattcacccagtaaaatactacaagtgtaaaagtctaaaaatatttggttttaaatatacttaagtacatGTAATTGCTAAAGTAATGTAATTGTtttggtttttttttttacaagtagccaggggcacactccaacactcaagacataatttacaaacgatgcatgtctgtttagtgagtccatcagatcagaggcagaagggaagaccagggatgttctcttggtaAGTGTGAATTTCacaatgttcctgtcctgcttgctaagcattcaaaatgtaatgagtacttttgggtgtcatggagactgtatggagtaaaaagtacattattttatttaagaaTGTAGTAGAAGTTgtcagaaatatatatatatatacatatatatagtaCAGATACTTATGTAGTACTTTAAAtaatttttactcaagtattttaCACAACTACACAAACAATTCTAATgaagatttttttaaatcagtttGAAGGTAATGAATGGCTTTGAAATGAGTTATTTCAGTACATGGTTTTGCTATGGTTGTTGTACATCGTAAATGCAACAAATGGTGTAAAATGCTTCACTGCaaacaataaaaatatatacactgaacaaaa

Function

NR:

description
SURP and G-patch domain-containing protein 1-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613951.2 True 3251 mRNA 0.48 14 78816120 78824322

Neighbor

gene id symbol gene type direction distance location
LOC110530703 LOC106569538 coding upstream 182042 78626521 ~ 78636077 (+)
plekhj1 plekhj1 coding upstream 205875 78607413 ~ 78610245 (+)
LOC110530701 LOC106569539 coding upstream 218353 78592298 ~ 78597767 (+)
onecut3b onecut3 coding upstream 454649 78335901 ~ 78361471 (+)
LOC110530995 LOC106569526 coding upstream 628071 78072559 ~ 78188049 (+)
LOC110530706 LOC106569546 coding downstream 6363 78830685 ~ 78861909 (+)
LOC110530707 LOC106569548 coding downstream 70269 78894591 ~ 78902977 (+)
LOC110530709 LOC106569551 coding downstream 114858 78939180 ~ 78952258 (+)
LOC110531004 LOC106569564 coding downstream 131913 78956235 ~ 78959026 (+)
LOC110530711 LOC106569552 coding downstream 162893 78987215 ~ 78992144 (+)
G750525 NA non-coding upstream 30202 78785677 ~ 78785918 (+)
G750523 NA non-coding upstream 35104 78780765 ~ 78781016 (+)
G750521 NA non-coding upstream 37087 78778787 ~ 78779033 (+)
G750516 NA non-coding upstream 47175 78768644 ~ 78768945 (+)
G750510 NA non-coding upstream 67944 78747971 ~ 78748176 (+)
G750731 NA non-coding downstream 48644 78872966 ~ 78873344 (+)
G750741 NA non-coding downstream 68531 78892853 ~ 78893122 (+)
G750759 NA non-coding downstream 98972 78923294 ~ 78923524 (+)
G750770 NA non-coding downstream 107940 78932262 ~ 78932476 (+)
G750840 NA non-coding downstream 139024 78963346 ~ 78963575 (+)
G750533 LOC106569543 other upstream 18572 78797142 ~ 78797548 (+)
G749663 tcf3 other upstream 570505 78244210 ~ 78245615 (+)
LOC110530993 LOC106569518 other upstream 928764 77863590 ~ 77887401 (+)
G749137 NA other upstream 1433509 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 1543460 77266652 ~ 77272660 (+)
G750854 NA other downstream 154908 78979230 ~ 78979981 (+)
G750935 NA other downstream 370948 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 521115 79210727 ~ 79347454 (+)
LOC110530726 LOC106600567 other downstream 724175 79548127 ~ 79579010 (+)
G752357 NA other downstream 1806988 80631310 ~ 80634052 (+)

Expression


Co-expression Network